RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 HNRNPRO43390 633 aaKnown RBP11.13□□□□□ -0.63
HDAC6-228ENST00000486227 SERPINB1P30740 379 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 POLR2LP62875 67 aaKnown RBP11.13□□□□□ -0.63
HDAC6-228ENST00000486227 POU5F1Q01860 360 aaKnown RBP11.13□□□□□ -0.63
HDAC6-228ENST00000486227 FUT11Q495W5 492 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 TIGD5Q53EQ6 642 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 FAM228AQ86W67 206 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 TNIP2Q8NFZ5 429 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 ZFAND2BQ8WV99 257 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 C11orf49Q9H6J7 331 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 CHKBQ9Y259 395 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 MYRFQ9Y2G1 1151 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 SNX10Q9Y5X0 201 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 BCLAF3A2AJT9 711 aaKnown RBP11.12□□□□□ -0.63
HDAC6-228ENST00000486227 PEX11AO75192 247 aa11.12□□□□□ -0.63
HDAC6-228ENST00000486227 LRIG2O94898 1065 aa11.12□□□□□ -0.63
HDAC6-228ENST00000486227 ZNF7P17097 686 aaPredicted RBP11.12□□□□□ -0.63
HDAC6-228ENST00000486227 IL1R2P27930 398 aa11.12□□□□□ -0.63
HDAC6-228ENST00000486227 DAOAP59103 153 aa11.12□□□□□ -0.63
HDAC6-228ENST00000486227 KHDC1Q4VXA5 237 aaKnown RBP11.12□□□□□ -0.63
HDAC6-228ENST00000486227 ANO7Q6IWH7 933 aa11.12□□□□□ -0.63
HDAC6-228ENST00000486227 ZDHHC24Q6UX98 284 aa11.12□□□□□ -0.63
HDAC6-228ENST00000486227 ADCK1Q86TW2 530 aa11.12□□□□□ -0.63
HDAC6-228ENST00000486227 CACUL1Q86Y37 369 aa11.12□□□□□ -0.63
HDAC6-228ENST00000486227 DBF4BQ8NFT6 615 aa11.12□□□□□ -0.63
HDAC6-228ENST00000486227 C1QTNF7Q9BXJ2 289 aa11.12□□□□□ -0.63
HDAC6-228ENST00000486227 MRPS26Q9BYN8 205 aaKnown RBP11.12□□□□□ -0.63
HDAC6-228ENST00000486227 SIX4Q9UIU6 781 aa11.12□□□□□ -0.63
HDAC6-228ENST00000486227 ANKRD6Q9Y2G4 727 aa11.12□□□□□ -0.63
HDAC6-228ENST00000486227 MYH14Q7Z406 1995 aaKnown RBP11.12□□□□□ -0.63
HDAC6-228ENST00000486227 KRT75O95678 551 aa11.12□□□□□ -0.63
HDAC6-228ENST00000486227 KRT8P05787 483 aa11.12□□□□□ -0.63
HDAC6-228ENST00000486227 UQCRBP14927 111 aa11.12□□□□□ -0.63
HDAC6-228ENST00000486227 WARSP23381 471 aaKnown RBP11.12□□□□□ -0.63
HDAC6-228ENST00000486227 GDF10P55107 478 aa11.12□□□□□ -0.63
HDAC6-228ENST00000486227 KRT72Q14CN4 511 aa11.12□□□□□ -0.63
HDAC6-228ENST00000486227 CYP1B1Q16678 543 aa11.12□□□□□ -0.63
HDAC6-228ENST00000486227 ATAT1Q5SQI0 421 aa11.12□□□□□ -0.63
HDAC6-228ENST00000486227 RBM44Q6ZP01 1051 aaKnown RBP11.12□□□□□ -0.63
HDAC6-228ENST00000486227 CMC1Q7Z7K0 106 aa11.12□□□□□ -0.63
HDAC6-228ENST00000486227 TMEM79Q9BSE2 394 aa11.12□□□□□ -0.63
HDAC6-228ENST00000486227 C17orf80Q9BSJ5 609 aa11.12□□□□□ -0.63
HDAC6-228ENST00000486227 THUMPD3Q9BV44 507 aaKnown RBP11.12□□□□□ -0.63
HDAC6-228ENST00000486227 SLC17A7Q9P2U7 560 aa11.12□□□□□ -0.63
HDAC6-228ENST00000486227 LNPEPQ9UIQ6 1025 aa11.12□□□□□ -0.63
HDAC6-228ENST00000486227 FBXO5Q9UKT4 447 aa11.12□□□□□ -0.63
HDAC6-228ENST00000486227 NR5A2O00482 541 aa11.12□□□□□ -0.63
HDAC6-228ENST00000486227 FAM155BO75949 473 aa11.12□□□□□ -0.63
HDAC6-228ENST00000486227 CCDC166P0CW27 439 aa11.12□□□□□ -0.63
HDAC6-228ENST00000486227 SPDYE7PQ495Y7 208 aa11.12□□□□□ -0.63
HDAC6-228ENST00000486227 ANKS6Q68DC2 871 aa11.12□□□□□ -0.63
HDAC6-228ENST00000486227 PACS1Q6VY07 963 aa11.12□□□□□ -0.63
HDAC6-228ENST00000486227 ZBTB49Q6ZSB9 765 aa11.12□□□□□ -0.63
HDAC6-228ENST00000486227 OTOP3Q7RTS5 596 aa11.12□□□□□ -0.63
HDAC6-228ENST00000486227 TNS4Q8IZW8 715 aa11.12□□□□□ -0.63
HDAC6-228ENST00000486227 PIWIL2Q8TC59 973 aaKnown RBP11.12□□□□□ -0.63
HDAC6-228ENST00000486227 ZCCHC2Q9C0B9 1178 aaKnown RBP11.12□□□□□ -0.63
HDAC6-228ENST00000486227 PHACTR1Q9C0D0 580 aa11.12□□□□□ -0.63
HDAC6-228ENST00000486227 POMKQ9H5K3 350 aa11.12□□□□□ -0.63
HDAC6-228ENST00000486227 GLOD4Q9HC38 313 aa11.12□□□□□ -0.63
HDAC6-228ENST00000486227 MID1IP1Q9NPA3 183 aa11.12□□□□□ -0.63
HDAC6-228ENST00000486227 CATSPERZQ9NTU4 200 aa11.12□□□□□ -0.63
HDAC6-228ENST00000486227 DDX28Q9NUL7 540 aaKnown RBP11.12□□□□□ -0.63
HDAC6-228ENST00000486227 ADAM28Q9UKQ2 775 aa11.12□□□□□ -0.63
HDAC6-228ENST00000486227 SATB2Q9UPW6 733 aa11.12□□□□□ -0.63
HDAC6-228ENST00000486227 ITGB4P16144 1822 aa11.12□□□□□ -0.63
HDAC6-228ENST00000486227 BTN3A1O00481 513 aa11.11□□□□□ -0.63
HDAC6-228ENST00000486227 MAGEC1O60732 1142 aa11.11□□□□□ -0.63
HDAC6-228ENST00000486227 SPATA31D3P0C874 917 aa11.11□□□□□ -0.63
HDAC6-228ENST00000486227 MRPS15P82914 257 aaKnown RBP11.11□□□□□ -0.63
HDAC6-228ENST00000486227 FAM182AQ5T1J6 154 aa11.11□□□□□ -0.63
HDAC6-228ENST00000486227 SPATA31D4Q6ZUB0 917 aa11.11□□□□□ -0.63
HDAC6-228ENST00000486227 TAC4Q86UU9 113 aa11.11□□□□□ -0.63
HDAC6-228ENST00000486227 NPAS4Q8IUM7 802 aa11.11□□□□□ -0.63
HDAC6-228ENST00000486227 RIN3Q8TB24 985 aa11.11□□□□□ -0.63
HDAC6-228ENST00000486227 DLG3Q92796 817 aa11.11□□□□□ -0.63
HDAC6-228ENST00000486227 ZBED3Q96IU2 234 aaPredicted RBP11.11□□□□□ -0.63
HDAC6-228ENST00000486227 ACOX2Q99424 681 aa11.11□□□□□ -0.63
HDAC6-228ENST00000486227 ACTR8Q9H981 624 aa11.11□□□□□ -0.63
HDAC6-228ENST00000486227 PTPRHQ9HD43 1115 aa11.11□□□□□ -0.63
HDAC6-228ENST00000486227 CYLDQ9NQC7 956 aa11.11□□□□□ -0.63
HDAC6-228ENST00000486227 KIF17Q9P2E2 1029 aa11.11□□□□□ -0.63
HDAC6-228ENST00000486227 EIF3LQ9Y262 564 aaKnown RBP11.11□□□□□ -0.63
HDAC6-228ENST00000486227 LRRC42Q9Y546 428 aa11.11□□□□□ -0.63
HDAC6-228ENST00000486227 M0R3G1 203 aa11.11□□□□□ -0.63
HDAC6-228ENST00000486227 TBL1XO60907 577 aa11.11□□□□□ -0.63
HDAC6-228ENST00000486227 ABL2P42684 1182 aa11.11□□□□□ -0.63
HDAC6-228ENST00000486227 MAP3K10Q02779 954 aa11.11□□□□□ -0.63
HDAC6-228ENST00000486227 PKN3Q6P5Z2 889 aa11.11□□□□□ -0.63
HDAC6-228ENST00000486227 FBXL19Q6PCT2 694 aa11.11□□□□□ -0.63
HDAC6-228ENST00000486227 PSRC1Q6PGN9 363 aaPredicted RBP11.11□□□□□ -0.63
HDAC6-228ENST00000486227 RASAL3Q86YV0 1011 aa11.11□□□□□ -0.63
HDAC6-228ENST00000486227 RGL4Q8IZJ4 473 aa11.11□□□□□ -0.63
HDAC6-228ENST00000486227 ZNF513Q8N8E2 541 aaPredicted RBP11.11□□□□□ -0.63
HDAC6-228ENST00000486227 SMG7Q92540 1137 aaKnown RBP11.11□□□□□ -0.63
HDAC6-228ENST00000486227 MECRQ9BV79 373 aa11.11□□□□□ -0.63
HDAC6-228ENST00000486227 ALG9Q9H6U8 611 aa11.11□□□□□ -0.63
HDAC6-228ENST00000486227 GTF2IRD1Q9UHL9 959 aa11.11□□□□□ -0.63
HDAC6-228ENST00000486227 FBXO10Q9UK96 956 aa11.11□□□□□ -0.63
HDAC6-228ENST00000486227 HCRTO43612 131 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms