RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 SEL1L3Q68CR1 1132 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 CCSAPQ6IQ19 270 aaPredicted RBP9.04□□□□□ -0.96
SYNE1-217ENST00000466159 CNSTQ6PJW8 725 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 TTC9BQ8N6N2 239 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 C2CD4AQ8NCU7 369 aaPredicted RBP9.04□□□□□ -0.96
SYNE1-217ENST00000466159 KLHDC9Q8NEP7 349 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 HMCESQ96FZ2 354 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 NDNQ99608 321 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 NT5MQ9NPB1 228 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 DNAJB4Q9UDY4 337 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 FBXO5Q9UKT4 447 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 LRCH1Q9Y2L9 728 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 PRG3Q9Y2Y8 225 aaPredicted RBP9.04□□□□□ -0.96
SYNE1-217ENST00000466159 DOCK4Q8N1I0 1966 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 A6NHS1 94 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 KIF1CO43896 1103 aaKnown RBP9.04□□□□□ -0.96
SYNE1-217ENST00000466159 SLC10A3P09131 477 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 COL6A2P12110 1019 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 SKIP12755 728 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 PAX7P23759 505 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 OR1G1P47890 313 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 CD151P48509 253 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 FCGRTP55899 365 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 INHBEP58166 350 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 NKX3-2P78367 333 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 BTKQ06187 659 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 KLC1Q07866 573 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 SLC10A7Q0GE19 358 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 TBL3Q12788 808 aaKnown RBP9.04□□□□□ -0.96
SYNE1-217ENST00000466159 CCNIQ14094 377 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 PPM1LQ5SGD2 360 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 RBM20Q5T481 1227 aaKnown RBP9.04□□□□□ -0.96
SYNE1-217ENST00000466159 TMCO4Q5TGY1 634 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 TMEM198Q66K66 360 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 NEPROQ6NW34 567 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 KDELC1Q6UW63 502 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 RNF111Q6ZNA4 994 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 MON1AQ86VX9 555 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 CCDC117Q8IWD4 279 aaPredicted RBP9.04□□□□□ -0.96
SYNE1-217ENST00000466159 NUP93Q8N1F7 819 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 CCNYL1Q8N7R7 359 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 HIPK4Q8NE63 616 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 SLC26A7Q8TE54 656 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 PTCD2Q8WV60 388 aaKnown RBP9.04□□□□□ -0.96
SYNE1-217ENST00000466159 HEXDCQ8WVB3 486 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 SLC39A13Q96H72 371 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 ZNF184Q99676 751 aaPredicted RBP9.04□□□□□ -0.96
SYNE1-217ENST00000466159 UBE2OQ9C0C9 1292 aaKnown RBP9.04□□□□□ -0.96
SYNE1-217ENST00000466159 ZCWPW1Q9H0M4 648 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 GPAMQ9HCL2 828 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 S100A14Q9HCY8 104 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 NDE1Q9NXR1 346 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 GMIPQ9P107 970 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 PACSIN3Q9UKS6 424 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 ARHGAP26Q9UNA1 814 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 SCML2Q9UQR0 700 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 TLR6Q9Y2C9 796 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 ARHGEF37A1IGU5 675 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 DPPA5A6NC42 116 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 NEMP2A6NFY4 417 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 TMEM233B4DJY2 109 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 AIM2O14862 343 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 SOAT2O75908 522 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 ELNP15502 786 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 PAMP19021 973 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 CD86P42081 329 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 TBX4P57082 545 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 DSC2Q02487 901 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 EFEMP1Q12805 493 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 PRKAA1Q13131 559 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 PSMD5Q16401 504 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 MS4A13Q5J8X5 152 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 KIAA0930Q6ICG6 404 aaPredicted RBP9.03□□□□□ -0.96
SYNE1-217ENST00000466159 GLB1LQ6UWU2 654 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 ZNF683Q8IZ20 524 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 TXNDC5Q8NBS9 432 aaKnown RBP9.03□□□□□ -0.96
SYNE1-217ENST00000466159 ATAD1Q8NBU5 361 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 PABPC5Q96DU9 382 aaKnown RBP9.03□□□□□ -0.96
SYNE1-217ENST00000466159 SPDL1Q96EA4 605 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 C1orf74Q96LT6 269 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 SLC25A51Q9H1U9 297 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 MRM3Q9HC36 420 aaKnown RBP9.03□□□□□ -0.96
SYNE1-217ENST00000466159 TBC1D13Q9NVG8 400 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 CORO1CQ9ULV4 474 aaPredicted RBP9.03□□□□□ -0.96
SYNE1-217ENST00000466159 SUFUQ9UMX1 484 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 POMPQ9Y244 141 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 WASH4PA8MWX3 477 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 FAM155AB1AL88 458 aaPredicted RBP9.03□□□□□ -0.96
SYNE1-217ENST00000466159 CCL22O00626 93 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 CLGNO14967 610 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 FKBP6O75344 327 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 OAZ2O95190 189 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 PRKAR2AP13861 404 aaKnown RBP9.03□□□□□ -0.96
SYNE1-217ENST00000466159 CPB1P15086 417 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 PAX3P23760 479 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 PIK3R1P27986 724 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 CRABP2P29373 138 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 PRDX6P30041 224 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 NRG1Q02297 640 aaPredicted RBP9.03□□□□□ -0.96
SYNE1-217ENST00000466159 DSC1Q08554 894 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms