RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 CUL1Q13616 776 aa10.22□□□□□ -0.77
CD44-207ENST00000425428 LAMB3Q13751 1172 aa10.22□□□□□ -0.77
CD44-207ENST00000425428 MORF4L2Q15014 288 aa10.22□□□□□ -0.77
CD44-207ENST00000425428 PTPRNQ16849 979 aa10.22□□□□□ -0.77
CD44-207ENST00000425428 ARMC12Q5T9G4 340 aa10.22□□□□□ -0.77
CD44-207ENST00000425428 IZUMO3Q5VZ72 239 aa10.22□□□□□ -0.77
CD44-207ENST00000425428 DNAAF3Q8N9W5 541 aa10.22□□□□□ -0.77
CD44-207ENST00000425428 TXNDC5Q8NBS9 432 aaKnown RBP10.22□□□□□ -0.77
CD44-207ENST00000425428 RMDN1Q96DB5 314 aa10.22□□□□□ -0.77
CD44-207ENST00000425428 MRGPRX3Q96LB0 322 aa10.22□□□□□ -0.77
CD44-207ENST00000425428 CPEB1Q9BZB8 566 aaKnown RBP10.22□□□□□ -0.77
CD44-207ENST00000425428 EPB41L5Q9HCM4 733 aa10.22□□□□□ -0.77
CD44-207ENST00000425428 FBRSL1Q9HCM7 1045 aaKnown RBP10.22□□□□□ -0.77
CD44-207ENST00000425428 RRAGDQ9NQL2 400 aaPredicted RBP10.22□□□□□ -0.77
CD44-207ENST00000425428 WHRNQ9P202 907 aa10.22□□□□□ -0.77
CD44-207ENST00000425428 SCML1Q9UN30 329 aa10.22□□□□□ -0.77
CD44-207ENST00000425428 NCKAP1Q9Y2A7 1128 aa10.22□□□□□ -0.77
CD44-207ENST00000425428 PMPCBO75439 489 aa10.21□□□□□ -0.77
CD44-207ENST00000425428 PEX11BO96011 259 aa10.21□□□□□ -0.77
CD44-207ENST00000425428 ADH1BP00325 375 aa10.21□□□□□ -0.77
CD44-207ENST00000425428 IL1BP01584 269 aa10.21□□□□□ -0.77
CD44-207ENST00000425428 DNTTP04053 509 aa10.21□□□□□ -0.77
CD44-207ENST00000425428 ZSCAN5DPP0CG00 497 aa10.21□□□□□ -0.77
CD44-207ENST00000425428 ETS1P14921 441 aa10.21□□□□□ -0.77
CD44-207ENST00000425428 IL12RB1P42701 662 aa10.21□□□□□ -0.77
CD44-207ENST00000425428 WASP42768 502 aa10.21□□□□□ -0.77
CD44-207ENST00000425428 KIR2DL1P43626 348 aaPredicted RBP10.21□□□□□ -0.77
CD44-207ENST00000425428 DGKEP52429 567 aa10.21□□□□□ -0.77
CD44-207ENST00000425428 TERF1P54274 439 aa10.21□□□□□ -0.77
CD44-207ENST00000425428 DSC2Q02487 901 aa10.21□□□□□ -0.77
CD44-207ENST00000425428 CCINQ13939 588 aa10.21□□□□□ -0.77
CD44-207ENST00000425428 PCSK7Q16549 785 aa10.21□□□□□ -0.77
CD44-207ENST00000425428 TTC31Q49AM3 519 aaPredicted RBP10.21□□□□□ -0.77
CD44-207ENST00000425428 ATXN7L2Q5T6C5 722 aaPredicted RBP10.21□□□□□ -0.77
CD44-207ENST00000425428 ZNF776Q68DI1 518 aaPredicted RBP10.21□□□□□ -0.77
CD44-207ENST00000425428 NAIF1Q69YI7 327 aaPredicted RBP10.21□□□□□ -0.77
CD44-207ENST00000425428 GDPD4Q6W3E5 623 aa10.21□□□□□ -0.77
CD44-207ENST00000425428 HOOK3Q86VS8 718 aa10.21□□□□□ -0.77
CD44-207ENST00000425428 PGBD3Q8N328 593 aa10.21□□□□□ -0.77
CD44-207ENST00000425428 TAB3Q8N5C8 712 aaPredicted RBP10.21□□□□□ -0.77
CD44-207ENST00000425428 GPR161Q8N6U8 529 aaKnown RBP10.21□□□□□ -0.77
CD44-207ENST00000425428 NOA1Q8NC60 698 aaKnown RBP10.21□□□□□ -0.77
CD44-207ENST00000425428 IPMKQ8NFU5 416 aa10.21□□□□□ -0.77
CD44-207ENST00000425428 GANCQ8TET4 914 aa10.21□□□□□ -0.77
CD44-207ENST00000425428 IFT81Q8WYA0 676 aa10.21□□□□□ -0.77
CD44-207ENST00000425428 IMP4Q96G21 291 aaKnown RBP10.21□□□□□ -0.77
CD44-207ENST00000425428 RBM15Q96T37 977 aaKnown RBP eCLIP10.21□□□□□ -0.77
CD44-207ENST00000425428 TRIM51Q9BSJ1 452 aa10.21□□□□□ -0.77
CD44-207ENST00000425428 DPH5Q9H2P9 285 aa10.21□□□□□ -0.77
CD44-207ENST00000425428 TMEM245Q9H330 911 aa10.21□□□□□ -0.77
CD44-207ENST00000425428 ETNK1Q9HBU6 452 aa10.21□□□□□ -0.77
CD44-207ENST00000425428 EIF2B3Q9NR50 452 aaKnown RBP10.21□□□□□ -0.77
CD44-207ENST00000425428 BCCIPQ9P287 314 aaKnown RBP eCLIP10.21□□□□□ -0.77
CD44-207ENST00000425428 LHX3Q9UBR4 397 aa10.21□□□□□ -0.77
CD44-207ENST00000425428 EVLQ9UI08 416 aaPredicted RBP10.21□□□□□ -0.77
CD44-207ENST00000425428 COL4A3Q01955 1670 aa10.21□□□□□ -0.77
CD44-207ENST00000425428 KRBA1A5PL33 1030 aa10.21□□□□□ -0.78
CD44-207ENST00000425428 F5H423 210 aaPredicted RBP10.21□□□□□ -0.78
CD44-207ENST00000425428 KPNA3O00505 521 aaPredicted RBP10.21□□□□□ -0.78
CD44-207ENST00000425428 DNALI1O14645 258 aaPredicted RBP10.21□□□□□ -0.78
CD44-207ENST00000425428 SIN3BO75182 1162 aa10.21□□□□□ -0.78
CD44-207ENST00000425428 HLA-EP13747 358 aa10.21□□□□□ -0.78
CD44-207ENST00000425428 TPSB2P20231 275 aa10.21□□□□□ -0.78
CD44-207ENST00000425428 DRG2P55039 364 aaKnown RBP10.21□□□□□ -0.78
CD44-207ENST00000425428 RPL26P61254 145 aaKnown RBP10.21□□□□□ -0.78
CD44-207ENST00000425428 SLC7A5Q01650 507 aa10.21□□□□□ -0.78
CD44-207ENST00000425428 CDK18Q07002 472 aa10.21□□□□□ -0.78
CD44-207ENST00000425428 SEMA5AQ13591 1074 aa10.21□□□□□ -0.78
CD44-207ENST00000425428 TPSAB1Q15661 275 aa10.21□□□□□ -0.78
CD44-207ENST00000425428 DNAJC21Q5F1R6 531 aaKnown RBP10.21□□□□□ -0.78
CD44-207ENST00000425428 EMC10Q5UCC4 262 aa10.21□□□□□ -0.78
CD44-207ENST00000425428 ALG1LQ6GMV1 187 aa10.21□□□□□ -0.78
CD44-207ENST00000425428 ERAP2Q6P179 960 aa10.21□□□□□ -0.78
CD44-207ENST00000425428 NCEH1Q6PIU2 408 aa10.21□□□□□ -0.78
CD44-207ENST00000425428 BRAT1Q6PJG6 821 aa10.21□□□□□ -0.78
CD44-207ENST00000425428 DPY19L3Q6ZPD9 716 aa10.21□□□□□ -0.78
CD44-207ENST00000425428 PDIK1LQ8N165 341 aa10.21□□□□□ -0.78
CD44-207ENST00000425428 CNTD1Q8N815 330 aa10.21□□□□□ -0.78
CD44-207ENST00000425428 PDCD7Q8N8D1 485 aaKnown RBP10.21□□□□□ -0.78
CD44-207ENST00000425428 IL17RCQ8NAC3 791 aa10.21□□□□□ -0.78
CD44-207ENST00000425428 TMIEQ8NEW7 156 aa10.21□□□□□ -0.78
CD44-207ENST00000425428 PJA1Q8NG27 643 aa10.21□□□□□ -0.78
CD44-207ENST00000425428 OR2A12Q8NGT7 310 aa10.21□□□□□ -0.78
CD44-207ENST00000425428 GRIN3AQ8TCU5 1115 aa10.21□□□□□ -0.78
CD44-207ENST00000425428 HCAR2Q8TDS4 363 aa10.21□□□□□ -0.78
CD44-207ENST00000425428 PRCCQ92733 491 aaPredicted RBP10.21□□□□□ -0.78
CD44-207ENST00000425428 PTPRN2Q92932 1015 aa10.21□□□□□ -0.78
CD44-207ENST00000425428 TBL1YQ9BQ87 522 aa10.21□□□□□ -0.78
CD44-207ENST00000425428 FOXP3Q9BZS1 431 aa10.21□□□□□ -0.78
CD44-207ENST00000425428 SUV39H2Q9H5I1 410 aa10.21□□□□□ -0.78
CD44-207ENST00000425428 NOD2Q9HC29 1040 aa10.21□□□□□ -0.78
CD44-207ENST00000425428 XAB2Q9HCS7 855 aaKnown RBP10.21□□□□□ -0.78
CD44-207ENST00000425428 UBP1Q9NZI7 540 aa10.21□□□□□ -0.78
CD44-207ENST00000425428 MMP17Q9ULZ9 603 aa10.21□□□□□ -0.78
CD44-207ENST00000425428 RPL26L1Q9UNX3 145 aaKnown RBP10.21□□□□□ -0.78
CD44-207ENST00000425428 SNX24Q9Y343 169 aa10.21□□□□□ -0.78
CD44-207ENST00000425428 RAI2Q9Y5P3 530 aa10.21□□□□□ -0.78
CD44-207ENST00000425428 ACTL7AQ9Y615 435 aa10.21□□□□□ -0.78
CD44-207ENST00000425428 WASH3PC4AMC7 463 aa10.2□□□□□ -0.78
CD44-207ENST00000425428 AP2A1O95782 977 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms