RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 DRG1Q9Y295 367 aaKnown RBP17.21■□□□□ 0.35
COL7A1-202ENST00000422991 PIEZO1Q92508 2521 aa17.21■□□□□ 0.35
COL7A1-202ENST00000422991 TTC24A2A3L6 582 aaPredicted RBP17.2■□□□□ 0.34
COL7A1-202ENST00000422991 C5orf60A6NFR6 353 aa17.2■□□□□ 0.34
COL7A1-202ENST00000422991 ESPNB1AK53 854 aa17.2■□□□□ 0.34
COL7A1-202ENST00000422991 C1QTNF3-AMACRE9PGA6 284 aa17.2■□□□□ 0.34
COL7A1-202ENST00000422991 H0Y858 1186 aa17.2■□□□□ 0.34
COL7A1-202ENST00000422991 ZBTB24O43167 697 aaPredicted RBP17.2■□□□□ 0.34
COL7A1-202ENST00000422991 ZNF500O60304 480 aaPredicted RBP17.2■□□□□ 0.34
COL7A1-202ENST00000422991 PHF2O75151 1096 aa17.2■□□□□ 0.34
COL7A1-202ENST00000422991 LEFTY1O75610 366 aa17.2■□□□□ 0.34
COL7A1-202ENST00000422991 ADH1BP00325 375 aa17.2■□□□□ 0.34
COL7A1-202ENST00000422991 HOXD11P31277 338 aaPredicted RBP17.2■□□□□ 0.34
COL7A1-202ENST00000422991 CD68P34810 354 aaPredicted RBP17.2■□□□□ 0.34
COL7A1-202ENST00000422991 PAFAH1B1P43034 410 aa17.2■□□□□ 0.34
COL7A1-202ENST00000422991 GDF10P55107 478 aa17.2■□□□□ 0.34
COL7A1-202ENST00000422991 DSC2Q02487 901 aa17.2■□□□□ 0.34
COL7A1-202ENST00000422991 RAD51Q06609 339 aa17.2■□□□□ 0.34
COL7A1-202ENST00000422991 ITKQ08881 620 aa17.2■□□□□ 0.34
COL7A1-202ENST00000422991 NIPAL4Q0D2K0 466 aa17.2■□□□□ 0.34
COL7A1-202ENST00000422991 GRM3Q14832 879 aa17.2■□□□□ 0.34
COL7A1-202ENST00000422991 CST6Q15828 149 aa17.2■□□□□ 0.34
COL7A1-202ENST00000422991 ARSIQ5FYB1 569 aa17.2■□□□□ 0.34
COL7A1-202ENST00000422991 TTC27Q6P3X3 843 aa17.2■□□□□ 0.34
COL7A1-202ENST00000422991 NCEH1Q6PIU2 408 aa17.2■□□□□ 0.34
COL7A1-202ENST00000422991 KIAA1324Q6UXG2 1013 aaKnown RBP17.2■□□□□ 0.34
COL7A1-202ENST00000422991 KIF18AQ8NI77 898 aa17.2■□□□□ 0.34
COL7A1-202ENST00000422991 ARRDC2Q8TBH0 407 aa17.2■□□□□ 0.34
COL7A1-202ENST00000422991 PIP4K2CQ8TBX8 421 aa17.2■□□□□ 0.34
COL7A1-202ENST00000422991 PRCCQ92733 491 aaPredicted RBP17.2■□□□□ 0.34
COL7A1-202ENST00000422991 ATOH1Q92858 354 aaPredicted RBP17.2■□□□□ 0.34
COL7A1-202ENST00000422991 SIPA1Q96FS4 1042 aa17.2■□□□□ 0.34
COL7A1-202ENST00000422991 LRIG1Q96JA1 1093 aa17.2■□□□□ 0.34
COL7A1-202ENST00000422991 TUBGCP5Q96RT8 1024 aa17.2■□□□□ 0.34
COL7A1-202ENST00000422991 NOD2Q9HC29 1040 aa17.2■□□□□ 0.34
COL7A1-202ENST00000422991 GLOD4Q9HC38 313 aa17.2■□□□□ 0.34
COL7A1-202ENST00000422991 SCUBE2Q9NQ36 999 aa17.2■□□□□ 0.34
COL7A1-202ENST00000422991 BCCIPQ9P287 314 aaKnown RBP eCLIP17.2■□□□□ 0.34
COL7A1-202ENST00000422991 FBXO4Q9UKT5 387 aa17.2■□□□□ 0.34
COL7A1-202ENST00000422991 OPHN1O60890 802 aa17.19■□□□□ 0.34
COL7A1-202ENST00000422991 URI1O94763 535 aaPredicted RBP17.19■□□□□ 0.34
COL7A1-202ENST00000422991 PIGNO95427 931 aa17.19■□□□□ 0.34
COL7A1-202ENST00000422991 IL1BP01584 269 aa17.19■□□□□ 0.34
COL7A1-202ENST00000422991 NFKB1P19838 968 aa17.19■□□□□ 0.34
COL7A1-202ENST00000422991 CES1P23141 567 aa17.19■□□□□ 0.34
COL7A1-202ENST00000422991 STIP1P31948 543 aaKnown RBP17.19■□□□□ 0.34
COL7A1-202ENST00000422991 PXNP49023 591 aaPredicted RBP17.19■□□□□ 0.34
COL7A1-202ENST00000422991 METAP1P53582 386 aa17.19■□□□□ 0.34
COL7A1-202ENST00000422991 ZBTB16Q05516 673 aa17.19■□□□□ 0.34
COL7A1-202ENST00000422991 IHHQ14623 411 aa17.19■□□□□ 0.34
COL7A1-202ENST00000422991 ANKRD20A2Q5SQ80 823 aa17.19■□□□□ 0.34
COL7A1-202ENST00000422991 ANKRD20A1Q5TYW2 823 aa17.19■□□□□ 0.34
COL7A1-202ENST00000422991 ANKRD20A3Q5VUR7 823 aa17.19■□□□□ 0.34
COL7A1-202ENST00000422991 TSSK4Q6SA08 328 aa17.19■□□□□ 0.34
COL7A1-202ENST00000422991 CCDC110Q8TBZ0 833 aa17.19■□□□□ 0.34
COL7A1-202ENST00000422991 MAGOHBQ96A72 148 aaKnown RBP17.19■□□□□ 0.34
COL7A1-202ENST00000422991 IMP4Q96G21 291 aaKnown RBP17.19■□□□□ 0.34
COL7A1-202ENST00000422991 OSBPL1AQ9BXW6 950 aa17.19■□□□□ 0.34
COL7A1-202ENST00000422991 SLC25A51Q9H1U9 297 aa17.19■□□□□ 0.34
COL7A1-202ENST00000422991 GBA3Q9H227 469 aa17.19■□□□□ 0.34
COL7A1-202ENST00000422991 PABPC3Q9H361 631 aaKnown RBP17.19■□□□□ 0.34
COL7A1-202ENST00000422991 ATP13A3Q9H7F0 1226 aa17.19■□□□□ 0.34
COL7A1-202ENST00000422991 CDC23Q9UJX2 597 aa17.19■□□□□ 0.34
COL7A1-202ENST00000422991 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP17.18■□□□□ 0.34
COL7A1-202ENST00000422991 KPNA3O00505 521 aaPredicted RBP17.18■□□□□ 0.34
COL7A1-202ENST00000422991 MID1O15344 667 aa17.18■□□□□ 0.34
COL7A1-202ENST00000422991 GCATO75600 419 aa17.18■□□□□ 0.34
COL7A1-202ENST00000422991 DNTTP04053 509 aa17.18■□□□□ 0.34
COL7A1-202ENST00000422991 UGT2B4P06133 528 aa17.18■□□□□ 0.34
COL7A1-202ENST00000422991 MMP2P08253 660 aa17.18■□□□□ 0.34
COL7A1-202ENST00000422991 C5AR1P21730 350 aa17.18■□□□□ 0.34
COL7A1-202ENST00000422991 SERPINA4P29622 427 aa17.18■□□□□ 0.34
COL7A1-202ENST00000422991 SLC8A1P32418 973 aa17.18■□□□□ 0.34
COL7A1-202ENST00000422991 COILP38432 576 aaPredicted RBP17.18■□□□□ 0.34
COL7A1-202ENST00000422991 KCNJ1P48048 391 aa17.18■□□□□ 0.34
COL7A1-202ENST00000422991 FNTAP49354 379 aa17.18■□□□□ 0.34
COL7A1-202ENST00000422991 CSTF1Q05048 431 aaKnown RBP17.18■□□□□ 0.34
COL7A1-202ENST00000422991 DMWDQ09019 674 aa17.18■□□□□ 0.34
COL7A1-202ENST00000422991 SLC14A2Q15849 920 aa17.18■□□□□ 0.34
COL7A1-202ENST00000422991 POM121L1PQ3SYA9 428 aa17.18■□□□□ 0.34
COL7A1-202ENST00000422991 FAM46CQ5VWP2 391 aa17.18■□□□□ 0.34
COL7A1-202ENST00000422991 ITPRIPL1Q6GPH6 555 aa17.18■□□□□ 0.34
COL7A1-202ENST00000422991 GDPD4Q6W3E5 623 aa17.18■□□□□ 0.34
COL7A1-202ENST00000422991 PID1Q7Z2X4 250 aa17.18■□□□□ 0.34
COL7A1-202ENST00000422991 PGBD3Q8N328 593 aa17.18■□□□□ 0.34
COL7A1-202ENST00000422991 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP17.18■□□□□ 0.34
COL7A1-202ENST00000422991 AADATQ8N5Z0 425 aa17.18■□□□□ 0.34
COL7A1-202ENST00000422991 ARRDC3Q96B67 414 aa17.18■□□□□ 0.34
COL7A1-202ENST00000422991 TADA1Q96BN2 335 aa17.18■□□□□ 0.34
COL7A1-202ENST00000422991 USP36Q9P275 1121 aaKnown RBP17.18■□□□□ 0.34
COL7A1-202ENST00000422991 SCML1Q9UN30 329 aa17.18■□□□□ 0.34
COL7A1-202ENST00000422991 AXIN1O15169 862 aa17.17■□□□□ 0.34
COL7A1-202ENST00000422991 SOCS5O75159 536 aa17.17■□□□□ 0.34
COL7A1-202ENST00000422991 SERPINF2P08697 491 aa17.17■□□□□ 0.34
COL7A1-202ENST00000422991 ITGB7P26010 798 aa17.17■□□□□ 0.34
COL7A1-202ENST00000422991 DRD3P35462 400 aa17.17■□□□□ 0.34
COL7A1-202ENST00000422991 CD86P42081 329 aa17.17■□□□□ 0.34
COL7A1-202ENST00000422991 SKOR1P84550 965 aa17.17■□□□□ 0.34
COL7A1-202ENST00000422991 BCL2L1Q07817 233 aa17.17■□□□□ 0.34
COL7A1-202ENST00000422991 ANGPT1Q15389 498 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms