RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 LRRC8EQ6NSJ5 796 aa13.53□□□□□ -0.24
VPS54-203ENST00000409558 PKN3Q6P5Z2 889 aa13.53□□□□□ -0.24
VPS54-203ENST00000409558 IFNEQ86WN2 208 aa13.53□□□□□ -0.24
VPS54-203ENST00000409558 TMEM86AQ8N2M4 240 aa13.53□□□□□ -0.24
VPS54-203ENST00000409558 HDAC11Q96DB2 347 aa13.53□□□□□ -0.24
VPS54-203ENST00000409558 COPS7BQ9H9Q2 264 aaPredicted RBP13.53□□□□□ -0.24
VPS54-203ENST00000409558 CAPN8A6NHC0 703 aa13.53□□□□□ -0.24
VPS54-203ENST00000409558 LMNAP02545 664 aaKnown RBP13.53□□□□□ -0.24
VPS54-203ENST00000409558 PIK3R1P27986 724 aa13.53□□□□□ -0.24
VPS54-203ENST00000409558 OR1E1P30953 314 aa13.53□□□□□ -0.24
VPS54-203ENST00000409558 TBX4P57082 545 aa13.53□□□□□ -0.24
VPS54-203ENST00000409558 PHC3Q8NDX5 983 aa13.53□□□□□ -0.24
VPS54-203ENST00000409558 CMTM5Q96DZ9 223 aa13.53□□□□□ -0.24
VPS54-203ENST00000409558 SENP6Q9GZR1 1112 aaPredicted RBP13.53□□□□□ -0.24
VPS54-203ENST00000409558 GEMIN8Q9NWZ8 242 aaKnown RBP13.53□□□□□ -0.24
VPS54-203ENST00000409558 RCOR3Q9P2K3 495 aaPredicted RBP13.53□□□□□ -0.24
VPS54-203ENST00000409558 SCOCQ9UIL1 159 aa13.53□□□□□ -0.24
VPS54-203ENST00000409558 MAFKO60675 156 aa13.53□□□□□ -0.24
VPS54-203ENST00000409558 PMLP29590 882 aa13.53□□□□□ -0.24
VPS54-203ENST00000409558 KCNQ1P51787 676 aa13.53□□□□□ -0.24
VPS54-203ENST00000409558 ATN1P54259 1190 aaPredicted RBP13.53□□□□□ -0.24
VPS54-203ENST00000409558 DUSP4Q13115 394 aa13.53□□□□□ -0.24
VPS54-203ENST00000409558 MARC1Q5VT66 337 aa13.53□□□□□ -0.24
VPS54-203ENST00000409558 DCLRE1AQ6PJP8 1040 aa13.53□□□□□ -0.24
VPS54-203ENST00000409558 ACAD11Q709F0 780 aa13.53□□□□□ -0.24
VPS54-203ENST00000409558 BHLHA9Q7RTU4 235 aa13.53□□□□□ -0.24
VPS54-203ENST00000409558 ARHGAP12Q8IWW6 846 aa13.53□□□□□ -0.24
VPS54-203ENST00000409558 OR13C4Q8NGS5 318 aa13.53□□□□□ -0.24
VPS54-203ENST00000409558 MYEOVQ96EZ4 313 aa13.53□□□□□ -0.24
VPS54-203ENST00000409558 ZNF184Q99676 751 aaPredicted RBP13.53□□□□□ -0.24
VPS54-203ENST00000409558 PCDHAC1Q9H158 963 aa13.53□□□□□ -0.24
VPS54-203ENST00000409558 CCSER2Q9H7U1 834 aa13.53□□□□□ -0.24
VPS54-203ENST00000409558 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.53□□□□□ -0.24
VPS54-203ENST00000409558 MARCH4Q9P2E8 410 aaPredicted RBP13.53□□□□□ -0.24
VPS54-203ENST00000409558 POMPQ9Y244 141 aa13.53□□□□□ -0.24
VPS54-203ENST00000409558 LUC7L3O95232 432 aaKnown RBP13.53□□□□□ -0.24
VPS54-203ENST00000409558 HOXD8P13378 290 aaPredicted RBP13.53□□□□□ -0.24
VPS54-203ENST00000409558 YWHAQP27348 245 aa13.53□□□□□ -0.24
VPS54-203ENST00000409558 RPL14P50914 215 aaKnown RBP13.53□□□□□ -0.24
VPS54-203ENST00000409558 SCNN1BP51168 640 aa13.53□□□□□ -0.24
VPS54-203ENST00000409558 CSE1LP55060 971 aaKnown RBP13.53□□□□□ -0.24
VPS54-203ENST00000409558 TAF10Q12962 218 aa13.53□□□□□ -0.24
VPS54-203ENST00000409558 TUSC3Q13454 348 aa13.53□□□□□ -0.24
VPS54-203ENST00000409558 TUBB3Q13509 450 aa13.53□□□□□ -0.24
VPS54-203ENST00000409558 PIK3R6Q5UE93 754 aa13.53□□□□□ -0.24
VPS54-203ENST00000409558 CENPLQ8N0S6 344 aaPredicted RBP13.53□□□□□ -0.24
VPS54-203ENST00000409558 OR6K2Q8NGY2 324 aa13.53□□□□□ -0.24
VPS54-203ENST00000409558 GDPD5Q8WTR4 605 aa13.53□□□□□ -0.24
VPS54-203ENST00000409558 OLFM1Q99784 485 aa13.53□□□□□ -0.24
VPS54-203ENST00000409558 SEMA3CQ99985 751 aa13.53□□□□□ -0.24
VPS54-203ENST00000409558 CATSPERBQ9H7T0 1116 aa13.53□□□□□ -0.24
VPS54-203ENST00000409558 STX18Q9P2W9 335 aaKnown RBP13.53□□□□□ -0.24
VPS54-203ENST00000409558 ARHGAP26Q9UNA1 814 aa13.53□□□□□ -0.24
VPS54-203ENST00000409558 KCNU1A8MYU2 1149 aa13.52□□□□□ -0.24
VPS54-203ENST00000409558 DNAJA2O60884 412 aa13.52□□□□□ -0.24
VPS54-203ENST00000409558 DUSP11O75319 330 aaKnown RBP13.52□□□□□ -0.24
VPS54-203ENST00000409558 ATP6V1B1P15313 513 aa13.52□□□□□ -0.24
VPS54-203ENST00000409558 CD151P48509 253 aa13.52□□□□□ -0.24
VPS54-203ENST00000409558 AQP4P55087 323 aa13.52□□□□□ -0.24
VPS54-203ENST00000409558 BTKQ06187 659 aa13.52□□□□□ -0.24
VPS54-203ENST00000409558 CCDC153Q494R4 210 aa13.52□□□□□ -0.24
VPS54-203ENST00000409558 PCID2Q5JVF3 399 aa13.52□□□□□ -0.24
VPS54-203ENST00000409558 RASIP1Q5U651 963 aa13.52□□□□□ -0.24
VPS54-203ENST00000409558 TRIM67Q6ZTA4 783 aa13.52□□□□□ -0.24
VPS54-203ENST00000409558 TMCO2Q7Z6W1 182 aaPredicted RBP13.52□□□□□ -0.24
VPS54-203ENST00000409558 IFNL1Q8IU54 200 aa13.52□□□□□ -0.24
VPS54-203ENST00000409558 DDIASQ8IXT1 998 aa13.52□□□□□ -0.24
VPS54-203ENST00000409558 TXNDC5Q8NBS9 432 aaKnown RBP13.52□□□□□ -0.24
VPS54-203ENST00000409558 IGSF8Q969P0 613 aa13.52□□□□□ -0.24
VPS54-203ENST00000409558 RPL10LQ96L21 214 aaKnown RBP13.52□□□□□ -0.24
VPS54-203ENST00000409558 TNFRSF12AQ9NP84 129 aa13.52□□□□□ -0.24
VPS54-203ENST00000409558 ADAMTS6Q9UKP5 1117 aa13.52□□□□□ -0.24
VPS54-203ENST00000409558 AAR2Q9Y312 384 aaKnown RBP13.52□□□□□ -0.24
VPS54-203ENST00000409558 SIP14410 1827 aa13.52□□□□□ -0.24
VPS54-203ENST00000409558 CES1P23141 567 aa13.52□□□□□ -0.25
VPS54-203ENST00000409558 CAP1Q01518 475 aa13.52□□□□□ -0.25
VPS54-203ENST00000409558 KIF19Q2TAC6 998 aa13.52□□□□□ -0.25
VPS54-203ENST00000409558 PRSS55Q6UWB4 352 aaPredicted RBP13.52□□□□□ -0.25
VPS54-203ENST00000409558 LINGO4Q6UY18 593 aa13.52□□□□□ -0.25
VPS54-203ENST00000409558 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.52□□□□□ -0.25
VPS54-203ENST00000409558 IFT43Q96FT9 208 aa13.52□□□□□ -0.25
VPS54-203ENST00000409558 TRPC7Q9HCX4 862 aa13.52□□□□□ -0.25
VPS54-203ENST00000409558 TRHDEQ9UKU6 1024 aa13.52□□□□□ -0.25
VPS54-203ENST00000409558 CDYLQ9Y232 598 aa13.52□□□□□ -0.25
VPS54-203ENST00000409558 PCDHB12Q9Y5F1 795 aa13.52□□□□□ -0.25
VPS54-203ENST00000409558 A0A0D9SEW6 157 aa13.52□□□□□ -0.25
VPS54-203ENST00000409558 HNRNPCL1O60812 293 aaKnown RBP13.52□□□□□ -0.25
VPS54-203ENST00000409558 WFS1O76024 890 aa13.52□□□□□ -0.25
VPS54-203ENST00000409558 PGM3O95394 542 aa13.52□□□□□ -0.25
VPS54-203ENST00000409558 ITGB6P18564 788 aa13.52□□□□□ -0.25
VPS54-203ENST00000409558 XRCC1P18887 633 aaPredicted RBP13.52□□□□□ -0.25
VPS54-203ENST00000409558 RAB10P61026 200 aa13.52□□□□□ -0.25
VPS54-203ENST00000409558 COG7P83436 770 aa13.52□□□□□ -0.25
VPS54-203ENST00000409558 FLOT2Q14254 428 aa13.52□□□□□ -0.25
VPS54-203ENST00000409558 AGKQ53H12 422 aa13.52□□□□□ -0.25
VPS54-203ENST00000409558 TIFABQ6ZNK6 161 aa13.52□□□□□ -0.25
VPS54-203ENST00000409558 OR7D4Q8NG98 312 aa13.52□□□□□ -0.25
VPS54-203ENST00000409558 ACMSDQ8TDX5 336 aa13.52□□□□□ -0.25
VPS54-203ENST00000409558 ANKRD49Q8WVL7 239 aa13.52□□□□□ -0.25
VPS54-203ENST00000409558 RHOJQ9H4E5 214 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms