RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 SCML1Q9UN30 329 aa29.71■■■□□ 2.35
USP42-202ENST00000404008 TUBB4AP04350 444 aa29.7■■■□□ 2.35
USP42-202ENST00000404008 ACADMP11310 421 aa29.7■■■□□ 2.35
USP42-202ENST00000404008 C5AR1P21730 350 aa29.7■■■□□ 2.35
USP42-202ENST00000404008 METAP1P53582 386 aa29.7■■■□□ 2.35
USP42-202ENST00000404008 SNX1Q13596 522 aa29.7■■■□□ 2.35
USP42-202ENST00000404008 GRM3Q14832 879 aa29.7■■■□□ 2.35
USP42-202ENST00000404008 DRICH1Q6PGQ1 229 aaPredicted RBP29.7■■■□□ 2.35
USP42-202ENST00000404008 NCEH1Q6PIU2 408 aa29.7■■■□□ 2.35
USP42-202ENST00000404008 WDR5BQ86VZ2 330 aa29.7■■■□□ 2.35
USP42-202ENST00000404008 ZNF567Q8N184 647 aa29.7■■■□□ 2.35
USP42-202ENST00000404008 CAPZA3Q96KX2 299 aa29.7■■■□□ 2.35
USP42-202ENST00000404008 TUBGCP5Q96RT8 1024 aa29.7■■■□□ 2.35
USP42-202ENST00000404008 SEMA3CQ99985 751 aa29.7■■■□□ 2.35
USP42-202ENST00000404008 TMEM121Q9BTD3 319 aa29.7■■■□□ 2.35
USP42-202ENST00000404008 NOD2Q9HC29 1040 aa29.7■■■□□ 2.35
USP42-202ENST00000404008 USP36Q9P275 1121 aaKnown RBP29.7■■■□□ 2.35
USP42-202ENST00000404008 KIF2AO00139 706 aaPredicted RBP29.69■■■□□ 2.34
USP42-202ENST00000404008 TTC31Q49AM3 519 aaPredicted RBP29.69■■■□□ 2.34
USP42-202ENST00000404008 LONP2Q86WA8 852 aa29.69■■■□□ 2.34
USP42-202ENST00000404008 AADATQ8N5Z0 425 aa29.69■■■□□ 2.34
USP42-202ENST00000404008 ARRDC2Q8TBH0 407 aa29.69■■■□□ 2.34
USP42-202ENST00000404008 AP1M1Q9BXS5 423 aa29.69■■■□□ 2.34
USP42-202ENST00000404008 CD93Q9NPY3 652 aa29.69■■■□□ 2.34
USP42-202ENST00000404008 ITM2CQ9NQX7 267 aa29.69■■■□□ 2.34
USP42-202ENST00000404008 TRHDEQ9UKU6 1024 aa29.69■■■□□ 2.34
USP42-202ENST00000404008 CFAP69A5D8W1 941 aa29.68■■■□□ 2.34
USP42-202ENST00000404008 KPNA3O00505 521 aaPredicted RBP29.68■■■□□ 2.34
USP42-202ENST00000404008 PIGNO95427 931 aa29.68■■■□□ 2.34
USP42-202ENST00000404008 UGT2B4P06133 528 aa29.68■■■□□ 2.34
USP42-202ENST00000404008 CES1P23141 567 aa29.68■■■□□ 2.34
USP42-202ENST00000404008 TPMTP51580 245 aa29.68■■■□□ 2.34
USP42-202ENST00000404008 DSC2Q02487 901 aa29.68■■■□□ 2.34
USP42-202ENST00000404008 POM121L1PQ3SYA9 428 aa29.68■■■□□ 2.34
USP42-202ENST00000404008 GDPD4Q6W3E5 623 aa29.68■■■□□ 2.34
USP42-202ENST00000404008 PRRX2Q99811 253 aa29.68■■■□□ 2.34
USP42-202ENST00000404008 ATP13A3Q9H7F0 1226 aa29.68■■■□□ 2.34
USP42-202ENST00000404008 KLHL8Q9P2G9 620 aaPredicted RBP29.68■■■□□ 2.34
USP42-202ENST00000404008 STK10O94804 968 aaKnown RBP29.67■■■□□ 2.34
USP42-202ENST00000404008 ITGAVP06756 1048 aa29.67■■■□□ 2.34
USP42-202ENST00000404008 DRD3P35462 400 aa29.67■■■□□ 2.34
USP42-202ENST00000404008 DEKP35659 375 aaKnown RBP29.67■■■□□ 2.34
USP42-202ENST00000404008 NIPAL4Q0D2K0 466 aa29.67■■■□□ 2.34
USP42-202ENST00000404008 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP29.67■■■□□ 2.34
USP42-202ENST00000404008 FAM71DQ8N9W8 422 aa29.67■■■□□ 2.34
USP42-202ENST00000404008 ARRDC3Q96B67 414 aa29.67■■■□□ 2.34
USP42-202ENST00000404008 PPP1R16AQ96I34 528 aa29.67■■■□□ 2.34
USP42-202ENST00000404008 GLOD4Q9HC38 313 aa29.67■■■□□ 2.34
USP42-202ENST00000404008 ZNF148Q9UQR1 794 aa29.67■■■□□ 2.34
USP42-202ENST00000404008 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP29.66■■■□□ 2.34
USP42-202ENST00000404008 ZNF217O75362 1048 aa29.66■■■□□ 2.34
USP42-202ENST00000404008 IGLV3-19P01714 112 aa29.66■■■□□ 2.34
USP42-202ENST00000404008 ITGB7P26010 798 aa29.66■■■□□ 2.34
USP42-202ENST00000404008 SERPINA4P29622 427 aa29.66■■■□□ 2.34
USP42-202ENST00000404008 CD68P34810 354 aaPredicted RBP29.66■■■□□ 2.34
USP42-202ENST00000404008 GDF10P55107 478 aa29.66■■■□□ 2.34
USP42-202ENST00000404008 IHHQ14623 411 aa29.66■■■□□ 2.34
USP42-202ENST00000404008 CYP1B1Q16678 543 aa29.66■■■□□ 2.34
USP42-202ENST00000404008 ZNF805Q5CZA5 627 aa29.66■■■□□ 2.34
USP42-202ENST00000404008 USP30Q70CQ3 517 aa29.66■■■□□ 2.34
USP42-202ENST00000404008 CAMK1DQ8IU85 385 aa29.66■■■□□ 2.34
USP42-202ENST00000404008 C12orf50Q8NA57 414 aaPredicted RBP29.66■■■□□ 2.34
USP42-202ENST00000404008 RTP4Q96DX8 246 aa29.66■■■□□ 2.34
USP42-202ENST00000404008 ZNF641Q96N77 438 aaPredicted RBP29.66■■■□□ 2.34
USP42-202ENST00000404008 KLHL32Q96NJ5 620 aa29.66■■■□□ 2.34
USP42-202ENST00000404008 SLC25A51Q9H1U9 297 aa29.66■■■□□ 2.34
USP42-202ENST00000404008 ZSCAN32Q9NX65 697 aa29.66■■■□□ 2.34
USP42-202ENST00000404008 FBXL12Q9NXK8 326 aa29.66■■■□□ 2.34
USP42-202ENST00000404008 RNF14Q9UBS8 474 aa29.66■■■□□ 2.34
USP42-202ENST00000404008 SERGEFQ9UGK8 458 aa29.66■■■□□ 2.34
USP42-202ENST00000404008 DRG1Q9Y295 367 aaKnown RBP29.66■■■□□ 2.34
USP42-202ENST00000404008 FANCMQ8IYD8 2048 aa29.66■■■□□ 2.34
USP42-202ENST00000404008 C5orf60A6NFR6 353 aa29.65■■■□□ 2.34
USP42-202ENST00000404008 MMP2P08253 660 aa29.65■■■□□ 2.34
USP42-202ENST00000404008 BCL2L1Q07817 233 aa29.65■■■□□ 2.34
USP42-202ENST00000404008 MAP7D1Q3KQU3 841 aa29.65■■■□□ 2.34
USP42-202ENST00000404008 ANKRD20A2Q5SQ80 823 aa29.65■■■□□ 2.34
USP42-202ENST00000404008 ANKRD20A1Q5TYW2 823 aa29.65■■■□□ 2.34
USP42-202ENST00000404008 ANKRD20A3Q5VUR7 823 aa29.65■■■□□ 2.34
USP42-202ENST00000404008 PID1Q7Z2X4 250 aa29.65■■■□□ 2.34
USP42-202ENST00000404008 HDDC3Q8N4P3 179 aa29.65■■■□□ 2.34
USP42-202ENST00000404008 PRSS33Q8NF86 280 aa29.65■■■□□ 2.34
USP42-202ENST00000404008 IMP4Q96G21 291 aaKnown RBP29.65■■■□□ 2.34
USP42-202ENST00000404008 SPATA13Q96N96 652 aa29.65■■■□□ 2.34
USP42-202ENST00000404008 SUV39H2Q9H5I1 410 aa29.65■■■□□ 2.34
USP42-202ENST00000404008 CYP8B1Q9UNU6 501 aa29.65■■■□□ 2.34
USP42-202ENST00000404008 GOLGA6L10A0A0M3HER8 536 aa29.64■■■□□ 2.34
USP42-202ENST00000404008 A0A1W2PP55 124 aa29.64■■■□□ 2.34
USP42-202ENST00000404008 RNASEH2AO75792 299 aaKnown RBP29.64■■■□□ 2.34
USP42-202ENST00000404008 NFKB1P19838 968 aa29.64■■■□□ 2.34
USP42-202ENST00000404008 STIP1P31948 543 aaKnown RBP29.64■■■□□ 2.34
USP42-202ENST00000404008 P2RY2P41231 377 aa29.64■■■□□ 2.34
USP42-202ENST00000404008 CNTN1Q12860 1018 aa29.64■■■□□ 2.34
USP42-202ENST00000404008 SFSWAPQ12872 951 aaKnown RBP29.64■■■□□ 2.34
USP42-202ENST00000404008 USP39Q53GS9 565 aaKnown RBP29.64■■■□□ 2.34
USP42-202ENST00000404008 KBTBD6Q86V97 674 aa29.64■■■□□ 2.34
USP42-202ENST00000404008 ZBTB44Q8NCP5 570 aa29.64■■■□□ 2.34
USP42-202ENST00000404008 CCDC110Q8TBZ0 833 aa29.64■■■□□ 2.34
USP42-202ENST00000404008 RLN3Q8WXF3 142 aa29.64■■■□□ 2.34
USP42-202ENST00000404008 FAM131CQ96AQ9 280 aa29.64■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms