RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 PCLAFQ15004 111 aa11.27□□□□□ -0.6
CUX1-204ENST00000393824 SOWAHAQ2M3V2 549 aa11.27□□□□□ -0.6
CUX1-204ENST00000393824 NANOGP8Q6NSW7 305 aa11.27□□□□□ -0.6
CUX1-204ENST00000393824 CAND1Q86VP6 1230 aaKnown RBP11.27□□□□□ -0.6
CUX1-204ENST00000393824 DSELQ8IZU8 1212 aa11.27□□□□□ -0.6
CUX1-204ENST00000393824 SLC4A11Q8NBS3 891 aa11.27□□□□□ -0.6
CUX1-204ENST00000393824 MCUQ8NE86 351 aa11.27□□□□□ -0.6
CUX1-204ENST00000393824 BHLHE22Q8NFJ8 381 aaPredicted RBP11.27□□□□□ -0.6
CUX1-204ENST00000393824 TFAP2BQ92481 460 aa11.27□□□□□ -0.6
CUX1-204ENST00000393824 CNDP1Q96KN2 507 aa11.27□□□□□ -0.6
CUX1-204ENST00000393824 DOK1Q99704 481 aa11.27□□□□□ -0.6
CUX1-204ENST00000393824 BCO2Q9BYV7 579 aa11.27□□□□□ -0.6
CUX1-204ENST00000393824 CAAP1Q9H8G2 361 aa11.27□□□□□ -0.6
CUX1-204ENST00000393824 HESX1Q9UBX0 185 aa11.27□□□□□ -0.6
CUX1-204ENST00000393824 PTBP2Q9UKA9 531 aaKnown RBP11.27□□□□□ -0.6
CUX1-204ENST00000393824 GIT1Q9Y2X7 761 aa11.27□□□□□ -0.6
CUX1-204ENST00000393824 DERAQ9Y315 318 aa11.27□□□□□ -0.6
CUX1-204ENST00000393824 TRIM64BA6NI03 449 aa11.27□□□□□ -0.61
CUX1-204ENST00000393824 PSMD12O00232 456 aaPredicted RBP11.27□□□□□ -0.61
CUX1-204ENST00000393824 ACOT8O14734 319 aa11.27□□□□□ -0.61
CUX1-204ENST00000393824 AIM2O14862 343 aa11.27□□□□□ -0.61
CUX1-204ENST00000393824 MED7O43513 233 aa11.27□□□□□ -0.61
CUX1-204ENST00000393824 NDUFB5O43674 189 aa11.27□□□□□ -0.61
CUX1-204ENST00000393824 RNASEH2AO75792 299 aaKnown RBP11.27□□□□□ -0.61
CUX1-204ENST00000393824 TIMP1P01033 207 aa11.27□□□□□ -0.61
CUX1-204ENST00000393824 SYN1P17600 705 aa11.27□□□□□ -0.61
CUX1-204ENST00000393824 KCNA4P22459 653 aa11.27□□□□□ -0.61
CUX1-204ENST00000393824 ME2P23368 584 aa11.27□□□□□ -0.61
CUX1-204ENST00000393824 IL1R2P27930 398 aa11.27□□□□□ -0.61
CUX1-204ENST00000393824 NUDT2P50583 147 aa11.27□□□□□ -0.61
CUX1-204ENST00000393824 NRLP54845 237 aa11.27□□□□□ -0.61
CUX1-204ENST00000393824 ABCE1P61221 599 aaKnown RBP11.27□□□□□ -0.61
CUX1-204ENST00000393824 DEFB103AP81534 67 aa11.27□□□□□ -0.61
CUX1-204ENST00000393824 CTBSQ01459 385 aa11.27□□□□□ -0.61
CUX1-204ENST00000393824 IKBKEQ14164 716 aa11.27□□□□□ -0.61
CUX1-204ENST00000393824 PPP2R5DQ14738 602 aa11.27□□□□□ -0.61
CUX1-204ENST00000393824 KCTD21Q4G0X4 260 aa11.27□□□□□ -0.61
CUX1-204ENST00000393824 ZNF667Q5HYK9 610 aa11.27□□□□□ -0.61
CUX1-204ENST00000393824 N4BP2L1Q5TBK1 243 aaPredicted RBP11.27□□□□□ -0.61
CUX1-204ENST00000393824 UNC5AQ6ZN44 842 aa11.27□□□□□ -0.61
CUX1-204ENST00000393824 CLVS1Q8IUQ0 354 aaPredicted RBP11.27□□□□□ -0.61
CUX1-204ENST00000393824 BEST2Q8NFU1 509 aa11.27□□□□□ -0.61
CUX1-204ENST00000393824 RP9Q8TA86 221 aaKnown RBP11.27□□□□□ -0.61
CUX1-204ENST00000393824 ZNF420Q8TAQ5 688 aaPredicted RBP11.27□□□□□ -0.61
CUX1-204ENST00000393824 TBC1D15Q8TC07 691 aa11.27□□□□□ -0.61
CUX1-204ENST00000393824 SPATA18Q8TC71 538 aa11.27□□□□□ -0.61
CUX1-204ENST00000393824 SEPT8Q92599 483 aa11.27□□□□□ -0.61
CUX1-204ENST00000393824 EME1Q96AY2 570 aa11.27□□□□□ -0.61
CUX1-204ENST00000393824 THAP11Q96EK4 314 aa11.27□□□□□ -0.61
CUX1-204ENST00000393824 VRTNQ9H8Y1 702 aa11.27□□□□□ -0.61
CUX1-204ENST00000393824 DCDC2Q9UHG0 476 aa11.27□□□□□ -0.61
CUX1-204ENST00000393824 PACSIN3Q9UKS6 424 aa11.27□□□□□ -0.61
CUX1-204ENST00000393824 TIMM13Q9Y5L4 95 aaPredicted RBP11.27□□□□□ -0.61
CUX1-204ENST00000393824 GPC6Q9Y625 555 aaPredicted RBP11.27□□□□□ -0.61
CUX1-204ENST00000393824 K7EPI3 171 aa11.26□□□□□ -0.61
CUX1-204ENST00000393824 CDH3P22223 829 aa11.26□□□□□ -0.61
CUX1-204ENST00000393824 CEACAM7Q14002 265 aa11.26□□□□□ -0.61
CUX1-204ENST00000393824 UPP1Q16831 310 aa11.26□□□□□ -0.61
CUX1-204ENST00000393824 INSCQ1MX18 579 aa11.26□□□□□ -0.61
CUX1-204ENST00000393824 KRT80Q6KB66 452 aa11.26□□□□□ -0.61
CUX1-204ENST00000393824 ZNF280DQ6N043 979 aa11.26□□□□□ -0.61
CUX1-204ENST00000393824 DARS2Q6PI48 645 aaKnown RBP11.26□□□□□ -0.61
CUX1-204ENST00000393824 SLC2A7Q6PXP3 512 aa11.26□□□□□ -0.61
CUX1-204ENST00000393824 NT5DC4Q86YG4 428 aa11.26□□□□□ -0.61
CUX1-204ENST00000393824 PGAM4Q8N0Y7 254 aa11.26□□□□□ -0.61
CUX1-204ENST00000393824 GSDMBQ8TAX9 411 aa11.26□□□□□ -0.61
CUX1-204ENST00000393824 KLHL32Q96NJ5 620 aa11.26□□□□□ -0.61
CUX1-204ENST00000393824 FERMT1Q9BQL6 677 aa11.26□□□□□ -0.61
CUX1-204ENST00000393824 ANKRD60Q9BZ19 345 aa11.26□□□□□ -0.61
CUX1-204ENST00000393824 ELOVL4Q9GZR5 314 aa11.26□□□□□ -0.61
CUX1-204ENST00000393824 DPEP3Q9H4B8 488 aa11.26□□□□□ -0.61
CUX1-204ENST00000393824 COQ10BQ9H8M1 238 aa11.26□□□□□ -0.61
CUX1-204ENST00000393824 COG4Q9H9E3 785 aa11.26□□□□□ -0.61
CUX1-204ENST00000393824 TBC1D13Q9NVG8 400 aa11.26□□□□□ -0.61
CUX1-204ENST00000393824 GNPTGQ9UJJ9 305 aa11.26□□□□□ -0.61
CUX1-204ENST00000393824 SPO11Q9Y5K1 396 aa11.26□□□□□ -0.61
CUX1-204ENST00000393824 CDY1Q9Y6F8 540 aa11.26□□□□□ -0.61
CUX1-204ENST00000393824 C5orf42Q9H799 3197 aa11.26□□□□□ -0.61
CUX1-204ENST00000393824 A0A087WXM4 84 aa11.26□□□□□ -0.61
CUX1-204ENST00000393824 TRIM64A6NGJ6 449 aa11.26□□□□□ -0.61
CUX1-204ENST00000393824 KIAA0355O15063 1070 aa11.26□□□□□ -0.61
CUX1-204ENST00000393824 SLC22A2O15244 555 aa11.26□□□□□ -0.61
CUX1-204ENST00000393824 SULT1C4O75897 302 aa11.26□□□□□ -0.61
CUX1-204ENST00000393824 ZBTB11O95625 1053 aaPredicted RBP11.26□□□□□ -0.61
CUX1-204ENST00000393824 ESRRBO95718 433 aa11.26□□□□□ -0.61
CUX1-204ENST00000393824 TRUB2O95900 331 aaKnown RBP11.26□□□□□ -0.61
CUX1-204ENST00000393824 LMO2P25791 158 aa11.26□□□□□ -0.61
CUX1-204ENST00000393824 MOGQ16653 247 aa11.26□□□□□ -0.61
CUX1-204ENST00000393824 NRF1Q16656 503 aa11.26□□□□□ -0.61
CUX1-204ENST00000393824 SMTNL2Q2TAL5 461 aa11.26□□□□□ -0.61
CUX1-204ENST00000393824 CCDC153Q494R4 210 aa11.26□□□□□ -0.61
CUX1-204ENST00000393824 DCAF6Q58WW2 860 aa11.26□□□□□ -0.61
CUX1-204ENST00000393824 KCNT1Q5JUK3 1230 aa11.26□□□□□ -0.61
CUX1-204ENST00000393824 FAM117BQ6P1L5 589 aa11.26□□□□□ -0.61
CUX1-204ENST00000393824 TMEM173Q86WV6 379 aaPredicted RBP11.26□□□□□ -0.61
CUX1-204ENST00000393824 C10orf107Q8IVU9 208 aa11.26□□□□□ -0.61
CUX1-204ENST00000393824 FIBCD1Q8N539 461 aa11.26□□□□□ -0.61
CUX1-204ENST00000393824 C12orf29Q8N999 325 aa11.26□□□□□ -0.61
CUX1-204ENST00000393824 ATP2A3Q93084 1043 aa11.26□□□□□ -0.61
CUX1-204ENST00000393824 HEPHQ9BQS7 1158 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms