RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 LRRC73Q5JTD7 316 aa13.54□□□□□ -0.24
VPS28-202ENST00000377348 PEAR1Q5VY43 1037 aaPredicted RBP13.54□□□□□ -0.24
VPS28-202ENST00000377348 GDPD4Q6W3E5 623 aa13.54□□□□□ -0.24
VPS28-202ENST00000377348 B4GALNT4Q76KP1 1039 aa13.54□□□□□ -0.24
VPS28-202ENST00000377348 SRLQ86TD4 932 aa13.54□□□□□ -0.24
VPS28-202ENST00000377348 NT5DC3Q86UY8 548 aa13.54□□□□□ -0.24
VPS28-202ENST00000377348 CCDC50Q8IVM0 306 aa13.54□□□□□ -0.24
VPS28-202ENST00000377348 PGBD5Q8N414 524 aa13.54□□□□□ -0.24
VPS28-202ENST00000377348 ZCCHC9Q8N567 271 aaKnown RBP13.54□□□□□ -0.24
VPS28-202ENST00000377348 DNASE2BQ8WZ79 361 aa13.54□□□□□ -0.24
VPS28-202ENST00000377348 ORAI3Q9BRQ5 295 aa13.54□□□□□ -0.24
VPS28-202ENST00000377348 HDAC8Q9BY41 377 aa13.54□□□□□ -0.24
VPS28-202ENST00000377348 EBF2Q9HAK2 575 aa13.54□□□□□ -0.24
VPS28-202ENST00000377348 SAE1Q9UBE0 346 aaPredicted RBP13.54□□□□□ -0.24
VPS28-202ENST00000377348 SEPT3Q9UH03 358 aa13.54□□□□□ -0.24
VPS28-202ENST00000377348 GUCA1BQ9UMX6 200 aa13.54□□□□□ -0.24
VPS28-202ENST00000377348 PACSIN2Q9UNF0 486 aaPredicted RBP13.54□□□□□ -0.24
VPS28-202ENST00000377348 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.54□□□□□ -0.24
VPS28-202ENST00000377348 PCDHA3Q9Y5H8 950 aa13.54□□□□□ -0.24
VPS28-202ENST00000377348 DNAH14Q0VDD8 3507 aa13.54□□□□□ -0.24
VPS28-202ENST00000377348 CEP250Q9BV73 2442 aa13.53□□□□□ -0.24
VPS28-202ENST00000377348 RALGAPA1Q6GYQ0 2036 aa13.53□□□□□ -0.24
VPS28-202ENST00000377348 hCG_1818297A0A087WSY0 165 aa13.53□□□□□ -0.24
VPS28-202ENST00000377348 C10orf142B7Z368 130 aa13.53□□□□□ -0.24
VPS28-202ENST00000377348 SLC7A4O43246 635 aa13.53□□□□□ -0.24
VPS28-202ENST00000377348 GDF9O60383 454 aa13.53□□□□□ -0.24
VPS28-202ENST00000377348 CFIP05156 583 aa13.53□□□□□ -0.24
VPS28-202ENST00000377348 ADRB3P13945 408 aa13.53□□□□□ -0.24
VPS28-202ENST00000377348 CTNNA2P26232 953 aa13.53□□□□□ -0.24
VPS28-202ENST00000377348 MAT2AP31153 395 aaKnown RBP13.53□□□□□ -0.24
VPS28-202ENST00000377348 ABL2P42684 1182 aa13.53□□□□□ -0.24
VPS28-202ENST00000377348 PEX5P50542 639 aa13.53□□□□□ -0.24
VPS28-202ENST00000377348 SCNN1BP51168 640 aa13.53□□□□□ -0.24
VPS28-202ENST00000377348 IRX4P78413 519 aa13.53□□□□□ -0.24
VPS28-202ENST00000377348 RAD51Q06609 339 aa13.53□□□□□ -0.24
VPS28-202ENST00000377348 IFI16Q16666 785 aaKnown RBP13.53□□□□□ -0.24
VPS28-202ENST00000377348 TRIM61Q5EBN2 209 aa13.53□□□□□ -0.24
VPS28-202ENST00000377348 AADACL2Q6P093 401 aa13.53□□□□□ -0.24
VPS28-202ENST00000377348 PEX26Q7Z412 305 aa13.53□□□□□ -0.24
VPS28-202ENST00000377348 CAMK1DQ8IU85 385 aa13.53□□□□□ -0.24
VPS28-202ENST00000377348 RCOR2Q8IZ40 523 aa13.53□□□□□ -0.24
VPS28-202ENST00000377348 CCNYQ8ND76 341 aa13.53□□□□□ -0.24
VPS28-202ENST00000377348 EXD1Q8NHP7 514 aa13.53□□□□□ -0.24
VPS28-202ENST00000377348 NSMCE1Q8WV22 266 aa13.53□□□□□ -0.24
VPS28-202ENST00000377348 ALG3Q92685 438 aa13.53□□□□□ -0.24
VPS28-202ENST00000377348 HAUS1Q96CS2 278 aa13.53□□□□□ -0.24
VPS28-202ENST00000377348 LRIG1Q96JA1 1093 aa13.53□□□□□ -0.24
VPS28-202ENST00000377348 PSKH2Q96QS6 385 aa13.53□□□□□ -0.24
VPS28-202ENST00000377348 LGMNQ99538 433 aa13.53□□□□□ -0.24
VPS28-202ENST00000377348 HERPUD2Q9BSE4 406 aa13.53□□□□□ -0.24
VPS28-202ENST00000377348 HEMGNQ9BXL5 484 aa13.53□□□□□ -0.24
VPS28-202ENST00000377348 OSBPL1AQ9BXW6 950 aa13.53□□□□□ -0.24
VPS28-202ENST00000377348 TSGA10Q9BZW7 698 aa13.53□□□□□ -0.24
VPS28-202ENST00000377348 PCED1AQ9H1Q7 454 aa13.53□□□□□ -0.24
VPS28-202ENST00000377348 GGT7Q9UJ14 662 aa13.53□□□□□ -0.24
VPS28-202ENST00000377348 AMFRQ9UKV5 643 aa13.53□□□□□ -0.24
VPS28-202ENST00000377348 CCDC66A2RUB6 948 aa13.52□□□□□ -0.25
VPS28-202ENST00000377348 KHNYNO15037 678 aaKnown RBP13.52□□□□□ -0.25
VPS28-202ENST00000377348 MATN3O15232 486 aa13.52□□□□□ -0.25
VPS28-202ENST00000377348 SPINT1O43278 529 aa13.52□□□□□ -0.25
VPS28-202ENST00000377348 CST8O60676 142 aa13.52□□□□□ -0.25
VPS28-202ENST00000377348 CCDC175P0C221 793 aa13.52□□□□□ -0.25
VPS28-202ENST00000377348 PECAM1P16284 738 aaPredicted RBP13.52□□□□□ -0.25
VPS28-202ENST00000377348 ZFXP17010 805 aaPredicted RBP13.52□□□□□ -0.25
VPS28-202ENST00000377348 ITIH2P19823 946 aa13.52□□□□□ -0.25
VPS28-202ENST00000377348 MX2P20592 715 aa13.52□□□□□ -0.25
VPS28-202ENST00000377348 MMP13P45452 471 aa13.52□□□□□ -0.25
VPS28-202ENST00000377348 RENBPP51606 427 aa13.52□□□□□ -0.25
VPS28-202ENST00000377348 NSUN2Q08J23 767 aaKnown RBP eCLIP13.52□□□□□ -0.25
VPS28-202ENST00000377348 DUOXA1Q1HG43 343 aa13.52□□□□□ -0.25
VPS28-202ENST00000377348 AASDHQ4L235 1098 aaPredicted RBP13.52□□□□□ -0.25
VPS28-202ENST00000377348 TFDP3Q5H9I0 405 aa13.52□□□□□ -0.25
VPS28-202ENST00000377348 MARC1Q5VT66 337 aa13.52□□□□□ -0.25
VPS28-202ENST00000377348 FBXL19Q6PCT2 694 aa13.52□□□□□ -0.25
VPS28-202ENST00000377348 LAYNQ6UX15 382 aa13.52□□□□□ -0.25
VPS28-202ENST00000377348 ZSWIM9Q86XI8 627 aa13.52□□□□□ -0.25
VPS28-202ENST00000377348 LRRC49Q8IUZ0 686 aa13.52□□□□□ -0.25
VPS28-202ENST00000377348 CCDC13Q8IYE1 715 aa13.52□□□□□ -0.25
VPS28-202ENST00000377348 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.52□□□□□ -0.25
VPS28-202ENST00000377348 GPR161Q8N6U8 529 aaKnown RBP13.52□□□□□ -0.25
VPS28-202ENST00000377348 C12orf50Q8NA57 414 aaPredicted RBP13.52□□□□□ -0.25
VPS28-202ENST00000377348 C1orf216Q8TAB5 229 aa13.52□□□□□ -0.25
VPS28-202ENST00000377348 MAML1Q92585 1016 aa13.52□□□□□ -0.25
VPS28-202ENST00000377348 KLK6Q92876 244 aa13.52□□□□□ -0.25
VPS28-202ENST00000377348 HDAC11Q96DB2 347 aa13.52□□□□□ -0.25
VPS28-202ENST00000377348 RBM41Q96IZ5 413 aaKnown RBP13.52□□□□□ -0.25
VPS28-202ENST00000377348 ZNF830Q96NB3 372 aaPredicted RBP13.52□□□□□ -0.25
VPS28-202ENST00000377348 OLFM3Q96PB7 478 aa13.52□□□□□ -0.25
VPS28-202ENST00000377348 TSGA13Q96PP4 275 aa13.52□□□□□ -0.25
VPS28-202ENST00000377348 CPEB1Q9BZB8 566 aaKnown RBP13.52□□□□□ -0.25
VPS28-202ENST00000377348 NT5MQ9NPB1 228 aa13.52□□□□□ -0.25
VPS28-202ENST00000377348 LZTFL1Q9NQ48 299 aa13.52□□□□□ -0.25
VPS28-202ENST00000377348 ITM2BQ9Y287 266 aa13.52□□□□□ -0.25
VPS28-202ENST00000377348 FADS3Q9Y5Q0 445 aa13.52□□□□□ -0.25
VPS28-202ENST00000377348 SHROOM3Q8TF72 1996 aa13.52□□□□□ -0.25
VPS28-202ENST00000377348 A0A1W2PPC4 97 aa13.51□□□□□ -0.25
VPS28-202ENST00000377348 A0A1W2PQU0 124 aa13.51□□□□□ -0.25
VPS28-202ENST00000377348 LNP1A1A4G5 178 aa13.51□□□□□ -0.25
VPS28-202ENST00000377348 KCNK1O00180 336 aa13.51□□□□□ -0.25
VPS28-202ENST00000377348 DDX3YO15523 660 aaKnown RBP13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 108 ms