RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 MPP5Q8N3R9 675 aa9.33□□□□□ -0.92
USP4-202ENST00000351842 UBLCP1Q8WVY7 318 aaPredicted RBP9.33□□□□□ -0.92
USP4-202ENST00000351842 CPT1BQ92523 772 aa9.33□□□□□ -0.92
USP4-202ENST00000351842 FAM136AQ96C01 138 aa9.33□□□□□ -0.92
USP4-202ENST00000351842 OTUB2Q96DC9 234 aa9.33□□□□□ -0.92
USP4-202ENST00000351842 ATXN7L3BQ96GX2 97 aa9.33□□□□□ -0.92
USP4-202ENST00000351842 SNF8Q96H20 258 aa9.33□□□□□ -0.92
USP4-202ENST00000351842 TEKT5Q96M29 485 aa9.33□□□□□ -0.92
USP4-202ENST00000351842 TPSD1Q9BZJ3 242 aa9.33□□□□□ -0.92
USP4-202ENST00000351842 GLOD4Q9HC38 313 aa9.33□□□□□ -0.92
USP4-202ENST00000351842 CD93Q9NPY3 652 aa9.33□□□□□ -0.92
USP4-202ENST00000351842 ZMYM5Q9UJ78 669 aa9.33□□□□□ -0.92
USP4-202ENST00000351842 SLC8A2Q9UPR5 921 aa9.33□□□□□ -0.92
USP4-202ENST00000351842 ITM2BQ9Y287 266 aa9.33□□□□□ -0.92
USP4-202ENST00000351842 NYNRINQ9P2P1 1898 aaKnown RBP9.32□□□□□ -0.92
USP4-202ENST00000351842 MAP2K7O14733 419 aa9.32□□□□□ -0.92
USP4-202ENST00000351842 NCAM2O15394 837 aa9.32□□□□□ -0.92
USP4-202ENST00000351842 CD160O95971 181 aa9.32□□□□□ -0.92
USP4-202ENST00000351842 CCNCP24863 283 aa9.32□□□□□ -0.92
USP4-202ENST00000351842 ABCG1P45844 678 aa9.32□□□□□ -0.92
USP4-202ENST00000351842 GAB4Q2WGN9 574 aa9.32□□□□□ -0.92
USP4-202ENST00000351842 KIAA1211LQ6NV74 962 aa9.32□□□□□ -0.92
USP4-202ENST00000351842 C22orf39Q6P5X5 142 aa9.32□□□□□ -0.92
USP4-202ENST00000351842 TTC7BQ86TV6 843 aa9.32□□□□□ -0.92
USP4-202ENST00000351842 SPNS2Q8IVW8 549 aa9.32□□□□□ -0.92
USP4-202ENST00000351842 RLN3Q8WXF3 142 aa9.32□□□□□ -0.92
USP4-202ENST00000351842 AZIN2Q96A70 460 aa9.32□□□□□ -0.92
USP4-202ENST00000351842 LRRC45Q96CN5 670 aa9.32□□□□□ -0.92
USP4-202ENST00000351842 NSMCE3Q96MG7 304 aa9.32□□□□□ -0.92
USP4-202ENST00000351842 KLHL32Q96NJ5 620 aa9.32□□□□□ -0.92
USP4-202ENST00000351842 PCDH9Q9HC56 1237 aa9.32□□□□□ -0.92
USP4-202ENST00000351842 ARHGEF3Q9NR81 526 aa9.32□□□□□ -0.92
USP4-202ENST00000351842 PAK5Q9P286 719 aa9.32□□□□□ -0.92
USP4-202ENST00000351842 FAM8A1Q9UBU6 413 aa9.32□□□□□ -0.92
USP4-202ENST00000351842 STOML2Q9UJZ1 356 aa9.32□□□□□ -0.92
USP4-202ENST00000351842 CACNA1EQ15878 2313 aa9.32□□□□□ -0.92
USP4-202ENST00000351842 BCLAF3A2AJT9 711 aaKnown RBP9.32□□□□□ -0.92
USP4-202ENST00000351842 FAM170BA6NMN3 283 aa9.32□□□□□ -0.92
USP4-202ENST00000351842 SERPINF2P08697 491 aa9.32□□□□□ -0.92
USP4-202ENST00000351842 MGAT1P26572 445 aa9.32□□□□□ -0.92
USP4-202ENST00000351842 PTPN7P35236 360 aa9.32□□□□□ -0.92
USP4-202ENST00000351842 DHX34Q14147 1143 aaKnown RBP9.32□□□□□ -0.92
USP4-202ENST00000351842 PRPSAP1Q14558 356 aa9.32□□□□□ -0.92
USP4-202ENST00000351842 SMYD5Q6GMV2 418 aa9.32□□□□□ -0.92
USP4-202ENST00000351842 ETFBKMTQ8IXQ9 262 aa9.32□□□□□ -0.92
USP4-202ENST00000351842 UNC5BQ8IZJ1 945 aa9.32□□□□□ -0.92
USP4-202ENST00000351842 MMGT1Q8N4V1 131 aa9.32□□□□□ -0.92
USP4-202ENST00000351842 EZH1Q92800 747 aaPredicted RBP9.32□□□□□ -0.92
USP4-202ENST00000351842 ALG14Q96F25 216 aa9.32□□□□□ -0.92
USP4-202ENST00000351842 FMO2Q99518 471 aa9.32□□□□□ -0.92
USP4-202ENST00000351842 WRAP53Q9BUR4 548 aaKnown RBP9.32□□□□□ -0.92
USP4-202ENST00000351842 VPS37BQ9H9H4 285 aa9.32□□□□□ -0.92
USP4-202ENST00000351842 ARFGAP3Q9NP61 516 aa9.32□□□□□ -0.92
USP4-202ENST00000351842 PCYOX1Q9UHG3 505 aa9.32□□□□□ -0.92
USP4-202ENST00000351842 TPX2Q9ULW0 747 aaKnown RBP9.32□□□□□ -0.92
USP4-202ENST00000351842 NEU2Q9Y3R4 380 aa9.32□□□□□ -0.92
USP4-202ENST00000351842 TLDC2A0PJX2 215 aa9.31□□□□□ -0.92
USP4-202ENST00000351842 CCDC151A5D8V7 595 aa9.31□□□□□ -0.92
USP4-202ENST00000351842 SCAMP1O15126 338 aa9.31□□□□□ -0.92
USP4-202ENST00000351842 GPR39O43194 453 aa9.31□□□□□ -0.92
USP4-202ENST00000351842 LEFTY1O75610 366 aa9.31□□□□□ -0.92
USP4-202ENST00000351842 MAT2AP31153 395 aaKnown RBP9.31□□□□□ -0.92
USP4-202ENST00000351842 SLCO1A2P46721 670 aa9.31□□□□□ -0.92
USP4-202ENST00000351842 HNRNPDQ14103 355 aaKnown RBP9.31□□□□□ -0.92
USP4-202ENST00000351842 BRD3Q15059 726 aa9.31□□□□□ -0.92
USP4-202ENST00000351842 FNBP1LQ5T0N5 605 aa9.31□□□□□ -0.92
USP4-202ENST00000351842 ALS2CLQ60I27 953 aa9.31□□□□□ -0.92
USP4-202ENST00000351842 ADHFE1Q8IWW8 467 aa9.31□□□□□ -0.92
USP4-202ENST00000351842 UCMAQ8WVF2 138 aa9.31□□□□□ -0.92
USP4-202ENST00000351842 HHIPQ96QV1 700 aa9.31□□□□□ -0.92
USP4-202ENST00000351842 MLPHQ9BV36 600 aaPredicted RBP9.31□□□□□ -0.92
USP4-202ENST00000351842 CD84Q9UIB8 345 aa9.31□□□□□ -0.92
USP4-202ENST00000351842 KCTD3Q9Y597 815 aa9.31□□□□□ -0.92
USP4-202ENST00000351842 OR51B4Q9Y5P0 310 aa9.31□□□□□ -0.92
USP4-202ENST00000351842 RAI2Q9Y5P3 530 aa9.31□□□□□ -0.92
USP4-202ENST00000351842 KRBA1A5PL33 1030 aa9.31□□□□□ -0.92
USP4-202ENST00000351842 ANHXE9PGG2 379 aa9.31□□□□□ -0.92
USP4-202ENST00000351842 ZMPSTE24O75844 475 aa9.31□□□□□ -0.92
USP4-202ENST00000351842 LATS1O95835 1130 aa9.31□□□□□ -0.92
USP4-202ENST00000351842 PEX11BO96011 259 aa9.31□□□□□ -0.92
USP4-202ENST00000351842 CISD3P0C7P0 127 aa9.31□□□□□ -0.92
USP4-202ENST00000351842 HOXB2P14652 356 aa9.31□□□□□ -0.92
USP4-202ENST00000351842 PFKLP17858 780 aa9.31□□□□□ -0.92
USP4-202ENST00000351842 BCL2L1Q07817 233 aa9.31□□□□□ -0.92
USP4-202ENST00000351842 CYP1B1Q16678 543 aa9.31□□□□□ -0.92
USP4-202ENST00000351842 KYNUQ16719 465 aa9.31□□□□□ -0.92
USP4-202ENST00000351842 MSS51Q4VC12 460 aa9.31□□□□□ -0.92
USP4-202ENST00000351842 ITPRIPL1Q6GPH6 555 aa9.31□□□□□ -0.92
USP4-202ENST00000351842 TSSK4Q6SA08 328 aa9.31□□□□□ -0.92
USP4-202ENST00000351842 SH2D3CQ8N5H7 860 aa9.31□□□□□ -0.92
USP4-202ENST00000351842 OR2W6PQ8NHA6 318 aa9.31□□□□□ -0.92
USP4-202ENST00000351842 E2F7Q96AV8 911 aa9.31□□□□□ -0.92
USP4-202ENST00000351842 ZNF778Q96MU6 729 aa9.31□□□□□ -0.92
USP4-202ENST00000351842 LMAN1LQ9HAT1 526 aa9.31□□□□□ -0.92
USP4-202ENST00000351842 IGSF9Q9P2J2 1179 aa9.31□□□□□ -0.92
USP4-202ENST00000351842 SLC17A6Q9P2U8 582 aa9.31□□□□□ -0.92
USP4-202ENST00000351842 TSR3Q9UJK0 312 aaKnown RBP9.31□□□□□ -0.92
USP4-202ENST00000351842 SARDHQ9UL12 918 aa9.31□□□□□ -0.92
USP4-202ENST00000351842 STON1Q9Y6Q2 735 aa9.31□□□□□ -0.92
USP4-202ENST00000351842 CELSR3Q9NYQ7 3312 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms