RNA–Protein interactions for RNA: ENST00000305481.10

USP47-201, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 3,577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-201ENST00000305481 CBX6O95503 412 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 MPOP05164 745 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 SBK3P0C264 359 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 SLC35E2BP0CK96 405 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 ACRP10323 421 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 TARSP26639 723 aaKnown RBP6.62□□□□□ -1.35
USP47-201ENST00000305481 SERPINB3P29508 390 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 HNRNPH1P31943 449 aaKnown RBP6.62□□□□□ -1.35
USP47-201ENST00000305481 RFC2P35250 354 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 ALDH1A3P47895 512 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 SLC11A2P49281 568 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 ELF3P78545 371 aaPredicted RBP6.62□□□□□ -1.35
USP47-201ENST00000305481 GNA12Q03113 381 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 TWF1Q12792 350 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 MTA1Q13330 715 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 SEPT6Q14141 434 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 BTG3Q14201 252 aaPredicted RBP6.62□□□□□ -1.35
USP47-201ENST00000305481 DBN1Q16643 649 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 TMCO4Q5TGY1 634 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 KIAA0930Q6ICG6 404 aaPredicted RBP6.62□□□□□ -1.35
USP47-201ENST00000305481 CYB5D1Q6P9G0 228 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 DNAJB7Q7Z6W7 309 aaPredicted RBP6.62□□□□□ -1.35
USP47-201ENST00000305481 DDX53Q86TM3 631 aaKnown RBP6.62□□□□□ -1.35
USP47-201ENST00000305481 ARID3BQ8IVW6 561 aaPredicted RBP6.62□□□□□ -1.35
USP47-201ENST00000305481 PAWRQ96IZ0 340 aaKnown RBP6.62□□□□□ -1.35
USP47-201ENST00000305481 RANBP9Q96S59 729 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 CYP2S1Q96SQ9 504 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 ZNF334Q9HCZ1 680 aaPredicted RBP6.62□□□□□ -1.35
USP47-201ENST00000305481 TRPM5Q9NZQ8 1165 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 HAO1Q9UJM8 370 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 KCTD3Q9Y597 815 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 PALM2-AKAP2B1ALY0 433 aaPredicted RBP6.61□□□□□ -1.35
USP47-201ENST00000305481 CCL22O00626 93 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 SCAMP3O14828 347 aaKnown RBP6.61□□□□□ -1.35
USP47-201ENST00000305481 PHGDHO43175 533 aaKnown RBP6.61□□□□□ -1.35
USP47-201ENST00000305481 LILRB3O75022 631 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 HAUS5O94927 633 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 TIMP1P01033 207 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 KRT16P08779 473 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 SPATA31D3P0C874 917 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 KITP10721 976 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 IRF1P10914 325 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 SKIV2L2P42285 1042 aaKnown RBP6.61□□□□□ -1.35
USP47-201ENST00000305481 RGRP47804 291 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 CDH4P55283 916 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 ZNF460Q14592 562 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 ZNF789Q5FWF6 425 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 TSTD2Q5T7W7 516 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 NAPRTQ6XQN6 538 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 SPATA31D4Q6ZUB0 917 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 SLC41A1Q8IVJ1 513 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 C2CD4AQ8NCU7 369 aaPredicted RBP6.61□□□□□ -1.35
USP47-201ENST00000305481 RNF217Q8TC41 542 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 ADAMTS19Q8TE59 1207 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 PLD4Q96BZ4 506 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 KLHL29Q96CT2 875 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 SLC7A6OSQ96CW6 309 aaPredicted RBP6.61□□□□□ -1.35
USP47-201ENST00000305481 TMEM237Q96Q45 408 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 SORT1Q99523 831 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 BEGAINQ9BUH8 593 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 MAGEH1Q9H213 219 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 KLC4Q9NSK0 619 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 THAP1Q9NVV9 213 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 SPG21Q9NZD8 308 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 MARCOQ9UEW3 520 aaPredicted RBP6.61□□□□□ -1.35
USP47-201ENST00000305481 HEATR9A2RTY3 570 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 TEX28O15482 410 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 LDB2O43679 373 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 MGRN1O60291 552 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 GREM1O60565 184 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 TSPAN3O60637 253 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 DNAJC6O75061 913 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 LINC00271P0C7V0 271 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 CPA3P15088 417 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 NQO1P15559 274 aaKnown RBP6.61□□□□□ -1.35
USP47-201ENST00000305481 SLC1A6P48664 564 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 ARSDP51689 593 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 SPDYAQ5MJ70 313 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 ADGRF1Q5T601 910 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 ZNF470Q6ECI4 717 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 ALG1LQ6GMV1 187 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 NEPROQ6NW34 567 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 TTC7BQ86TV6 843 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 ALYREFQ86V81 257 aaKnown RBP6.61□□□□□ -1.35
USP47-201ENST00000305481 TCEAL8Q8IYN2 117 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 CMTR2Q8IYT2 770 aaKnown RBP6.61□□□□□ -1.35
USP47-201ENST00000305481 CENPLQ8N0S6 344 aaPredicted RBP6.61□□□□□ -1.35
USP47-201ENST00000305481 UTP4Q969X6 686 aaKnown RBP6.61□□□□□ -1.35
USP47-201ENST00000305481 POLR1EQ9GZS1 481 aaKnown RBP6.61□□□□□ -1.35
USP47-201ENST00000305481 IL21Q9HBE4 155 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 WBP1LQ9NX94 342 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 NSMCE4AQ9NXX6 385 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 KCNK4Q9NYG8 393 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 ZFP69BQ9UJL9 534 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 NRG2O14511 850 aaPredicted RBP6.61□□□□□ -1.35
USP47-201ENST00000305481 PRRG1O14668 218 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 KDELR3O43731 214 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 F11P03951 625 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 SAT1P21673 171 aa6.61□□□□□ -1.35
USP47-201ENST00000305481 AVPR1AP37288 418 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms