RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 H0Y858 1186 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 OR6A2O95222 327 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 AMD1P17707 334 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 MAGEA10P43363 369 aaPredicted RBP11.56□□□□□ -0.56
USP53-201ENST00000274030 MTA1Q13330 715 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 ITGB3BPQ13352 177 aaPredicted RBP11.56□□□□□ -0.56
USP53-201ENST00000274030 PAGE2BQ5JRK9 111 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 TREML2Q5T2D2 321 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 ZNF618Q5T7W0 954 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 ZNF544Q6NX49 715 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 CMC1Q7Z7K0 106 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 CACTIN-AS1Q8N1I8 211 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 BPIFB6Q8NFQ5 453 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 HDAC10Q969S8 669 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 ACAT2Q9BWD1 397 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 CEP44Q9C0F1 390 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 ASAH2Q9NR71 780 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 ZNF446Q9NWS9 450 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 PCYOX1Q9UHG3 505 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 C15orf41Q9Y2V0 281 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 ABCA9Q8IUA7 1624 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 CYP3A7-CYP3A51PA0A087WV96 503 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 BCLAF3A2AJT9 711 aaKnown RBP11.56□□□□□ -0.56
USP53-201ENST00000274030 TGFB1I1O43294 461 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 LINC00032P0C843 101 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 HGFP14210 728 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 CYP3A7P24462 503 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 CTNNB1P35222 781 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 ELF3P78545 371 aaPredicted RBP11.56□□□□□ -0.56
USP53-201ENST00000274030 PTSQ03393 145 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 NAB1Q13506 487 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 TSNQ15631 228 aaKnown RBP11.56□□□□□ -0.56
USP53-201ENST00000274030 UBASH3BQ8TF42 649 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 HSD17B14Q9BPX1 270 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 FGFBP2Q9BYJ0 223 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 MIR1-1HGQ9H1L0 117 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 EPB41L4BQ9H329 900 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 SAR1AQ9NR31 198 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 PCDHB9Q9Y5E1 797 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 A0A1W2PPM1 405 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 MSI1O43347 362 aaKnown RBP11.56□□□□□ -0.56
USP53-201ENST00000274030 OR6B1O95007 311 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 PIK3CGP48736 1102 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 ZFP1Q6P2D0 407 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 ZBTB46Q86UZ6 589 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 FUKQ8N0W3 1084 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 PARP8Q8N3A8 854 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 SVOPQ8N4V2 548 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 NKAPQ8N5F7 415 aaKnown RBP11.56□□□□□ -0.56
USP53-201ENST00000274030 CENPIQ92674 756 aaPredicted RBP11.56□□□□□ -0.56
USP53-201ENST00000274030 OLFM1Q99784 485 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 ADI1Q9BV57 179 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 ACE2Q9BYF1 805 aaPredicted RBP11.56□□□□□ -0.56
USP53-201ENST00000274030 RAD21L1Q9H4I0 556 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 ADAM30Q9UKF2 790 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 MAP2P11137 1827 aaKnown RBP11.56□□□□□ -0.56
USP53-201ENST00000274030 ENTPD5O75356 428 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 ULK1O75385 1050 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 ITGA2BP08514 1039 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 ARF4P18085 180 aaPredicted RBP11.56□□□□□ -0.56
USP53-201ENST00000274030 ATP5F1P24539 256 aaPredicted RBP11.56□□□□□ -0.56
USP53-201ENST00000274030 LSM3P62310 102 aaKnown RBP11.56□□□□□ -0.56
USP53-201ENST00000274030 BIKQ13323 160 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 MAPKAPK3Q16644 382 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 NAIF1Q69YI7 327 aaPredicted RBP11.56□□□□□ -0.56
USP53-201ENST00000274030 PACS2Q86VP3 889 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 SETD9Q8NE22 299 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 FAM45AQ8TCE6 357 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 ASB2Q96Q27 587 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 MRPL39Q9NYK5 338 aaKnown RBP11.56□□□□□ -0.56
USP53-201ENST00000274030 XPR1Q9UBH6 696 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 STK39Q9UEW8 545 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 RABGEF1Q9UJ41 708 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 GNPTGQ9UJJ9 305 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 FRMPD1Q5SYB0 1578 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 KCNJ2P63252 427 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 FAM151BQ6UXP7 276 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 BTBD9Q96Q07 612 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 ZNF184Q99676 751 aaPredicted RBP11.56□□□□□ -0.56
USP53-201ENST00000274030 ATP13A3Q9H7F0 1226 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 TLR5O60602 858 aa11.55□□□□□ -0.56
USP53-201ENST00000274030 OR4Q2P0C623 313 aa11.55□□□□□ -0.56
USP53-201ENST00000274030 MSX2P35548 267 aaPredicted RBP11.55□□□□□ -0.56
USP53-201ENST00000274030 KRR1Q13601 381 aaKnown RBP11.55□□□□□ -0.56
USP53-201ENST00000274030 SPESP1Q6UW49 350 aa11.55□□□□□ -0.56
USP53-201ENST00000274030 TERB1Q8NA31 727 aa11.55□□□□□ -0.56
USP53-201ENST00000274030 SNX6Q9UNH7 406 aa11.55□□□□□ -0.56
USP53-201ENST00000274030 SATB2Q9UPW6 733 aa11.55□□□□□ -0.56
USP53-201ENST00000274030 SPATA31C2B4DYI2 1134 aa11.55□□□□□ -0.56
USP53-201ENST00000274030 SNRPB2P08579 225 aaKnown RBP11.55□□□□□ -0.56
USP53-201ENST00000274030 COX4I1P13073 169 aa11.55□□□□□ -0.56
USP53-201ENST00000274030 NTSP30990 170 aa11.55□□□□□ -0.56
USP53-201ENST00000274030 NUP62P37198 522 aaPredicted RBP11.55□□□□□ -0.56
USP53-201ENST00000274030 RAB10P61026 200 aa11.55□□□□□ -0.56
USP53-201ENST00000274030 HSDL1Q3SXM5 330 aa11.55□□□□□ -0.56
USP53-201ENST00000274030 ARSHQ5FYA8 562 aa11.55□□□□□ -0.56
USP53-201ENST00000274030 IRF2BP2Q7Z5L9 587 aa11.55□□□□□ -0.56
USP53-201ENST00000274030 ALYREFQ86V81 257 aaKnown RBP11.55□□□□□ -0.56
USP53-201ENST00000274030 ALG3Q92685 438 aa11.55□□□□□ -0.56
USP53-201ENST00000274030 FCRL2Q96LA5 508 aaPredicted RBP11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms