RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 SRP72O76094 671 aaKnown RBP12.09□□□□□ -0.47
USHBP1-201ENST00000252597 C22orf31O95567 290 aa12.09□□□□□ -0.47
USHBP1-201ENST00000252597 ICAM3P32942 547 aa12.09□□□□□ -0.47
USHBP1-201ENST00000252597 OAZ1P54368 228 aa12.09□□□□□ -0.47
USHBP1-201ENST00000252597 LPIN1Q14693 890 aa12.09□□□□□ -0.47
USHBP1-201ENST00000252597 LBX2Q6XYB7 198 aa12.09□□□□□ -0.47
USHBP1-201ENST00000252597 SLC26A9Q7LBE3 791 aa12.09□□□□□ -0.47
USHBP1-201ENST00000252597 PGAM4Q8N0Y7 254 aa12.09□□□□□ -0.47
USHBP1-201ENST00000252597 CATSPER1Q8NEC5 780 aa12.09□□□□□ -0.47
USHBP1-201ENST00000252597 FBXL8Q96CD0 374 aa12.09□□□□□ -0.47
USHBP1-201ENST00000252597 LRCH3Q96II8 777 aa12.09□□□□□ -0.47
USHBP1-201ENST00000252597 NDUFA13Q9P0J0 144 aa12.09□□□□□ -0.47
USHBP1-201ENST00000252597 KIAA1257Q9ULG3 409 aa12.09□□□□□ -0.47
USHBP1-201ENST00000252597 FZD10Q9ULW2 581 aa12.09□□□□□ -0.47
USHBP1-201ENST00000252597 DMTF1Q9Y222 760 aa12.09□□□□□ -0.47
USHBP1-201ENST00000252597 UBA6A0AVT1 1052 aaPredicted RBP12.09□□□□□ -0.47
USHBP1-201ENST00000252597 ERI2A8K979 691 aaKnown RBP12.09□□□□□ -0.47
USHBP1-201ENST00000252597 IL1BP01584 269 aa12.09□□□□□ -0.47
USHBP1-201ENST00000252597 MPOP05164 745 aa12.09□□□□□ -0.47
USHBP1-201ENST00000252597 MTHFD1P11586 935 aaKnown RBP12.09□□□□□ -0.47
USHBP1-201ENST00000252597 KCNA5P22460 613 aa12.09□□□□□ -0.47
USHBP1-201ENST00000252597 NDST2P52849 883 aa12.09□□□□□ -0.47
USHBP1-201ENST00000252597 PHEXP78562 749 aa12.09□□□□□ -0.47
USHBP1-201ENST00000252597 ZNF789Q5FWF6 425 aa12.09□□□□□ -0.47
USHBP1-201ENST00000252597 PIGGQ5H8A4 983 aa12.09□□□□□ -0.47
USHBP1-201ENST00000252597 SH3D19Q5HYK7 790 aa12.09□□□□□ -0.47
USHBP1-201ENST00000252597 DHFR2Q86XF0 187 aa12.09□□□□□ -0.47
USHBP1-201ENST00000252597 TXNDC5Q8NBS9 432 aaKnown RBP12.09□□□□□ -0.47
USHBP1-201ENST00000252597 GIPC3Q8TF64 312 aa12.09□□□□□ -0.47
USHBP1-201ENST00000252597 KBTBD7Q8WVZ9 684 aa12.09□□□□□ -0.47
USHBP1-201ENST00000252597 APBB2Q92870 758 aa12.09□□□□□ -0.47
USHBP1-201ENST00000252597 TUBGCP3Q96CW5 907 aa12.09□□□□□ -0.47
USHBP1-201ENST00000252597 RTP4Q96DX8 246 aa12.09□□□□□ -0.47
USHBP1-201ENST00000252597 ZFRQ96KR1 1074 aaKnown RBP12.09□□□□□ -0.47
USHBP1-201ENST00000252597 LRRC14BA6NHZ5 514 aa12.09□□□□□ -0.47
USHBP1-201ENST00000252597 DYNC1LI2O43237 492 aaPredicted RBP12.09□□□□□ -0.47
USHBP1-201ENST00000252597 MAN1A2O60476 641 aa12.09□□□□□ -0.47
USHBP1-201ENST00000252597 SIX3O95343 332 aaPredicted RBP12.09□□□□□ -0.47
USHBP1-201ENST00000252597 ENPEPQ07075 957 aa12.09□□□□□ -0.47
USHBP1-201ENST00000252597 SLC25A52Q3SY17 297 aa12.09□□□□□ -0.47
USHBP1-201ENST00000252597 DPP9Q86TI2 863 aa12.09□□□□□ -0.47
USHBP1-201ENST00000252597 FBXL20Q96IG2 436 aa12.09□□□□□ -0.47
USHBP1-201ENST00000252597 STN1Q9H668 368 aaKnown RBP12.09□□□□□ -0.47
USHBP1-201ENST00000252597 SARS2Q9NP81 518 aaKnown RBP12.09□□□□□ -0.47
USHBP1-201ENST00000252597 UTP6Q9NYH9 597 aaKnown RBP12.09□□□□□ -0.47
USHBP1-201ENST00000252597 MPP6Q9NZW5 540 aa12.09□□□□□ -0.47
USHBP1-201ENST00000252597 MID2Q9UJV3 735 aa12.09□□□□□ -0.47
USHBP1-201ENST00000252597 TMCO1Q9UM00 188 aa12.09□□□□□ -0.47
USHBP1-201ENST00000252597 PRPF19Q9UMS4 504 aaKnown RBP12.09□□□□□ -0.47
USHBP1-201ENST00000252597 KIAA1217Q5T5P2 1943 aa12.08□□□□□ -0.47
USHBP1-201ENST00000252597 PRRC2BQ5JSZ5 2229 aaKnown RBP12.08□□□□□ -0.48
USHBP1-201ENST00000252597 IGKV6D-21A0A0A0MT36 114 aa12.08□□□□□ -0.48
USHBP1-201ENST00000252597 ZCWPW2A0A1B0GU75 182 aa12.08□□□□□ -0.48
USHBP1-201ENST00000252597 AGRPO00253 132 aa12.08□□□□□ -0.48
USHBP1-201ENST00000252597 TRIM38O00635 465 aa12.08□□□□□ -0.48
USHBP1-201ENST00000252597 PPP6CO00743 305 aa12.08□□□□□ -0.48
USHBP1-201ENST00000252597 NOL3O60936 208 aaKnown RBP12.08□□□□□ -0.48
USHBP1-201ENST00000252597 AP2A1O95782 977 aa12.08□□□□□ -0.48
USHBP1-201ENST00000252597 HMBSP08397 361 aa12.08□□□□□ -0.48
USHBP1-201ENST00000252597 CTSHP09668 335 aa12.08□□□□□ -0.48
USHBP1-201ENST00000252597 TGFB3P10600 412 aa12.08□□□□□ -0.48
USHBP1-201ENST00000252597 PROZP22891 400 aa12.08□□□□□ -0.48
USHBP1-201ENST00000252597 ADRA1BP35368 520 aa12.08□□□□□ -0.48
USHBP1-201ENST00000252597 MAGEA3P43357 314 aa12.08□□□□□ -0.48
USHBP1-201ENST00000252597 GHRHRQ02643 423 aa12.08□□□□□ -0.48
USHBP1-201ENST00000252597 PRAMEF19Q5SWL8 479 aa12.08□□□□□ -0.48
USHBP1-201ENST00000252597 C4orf22Q6V702 233 aa12.08□□□□□ -0.48
USHBP1-201ENST00000252597 ARMCX2Q7L311 632 aa12.08□□□□□ -0.48
USHBP1-201ENST00000252597 ZNF410Q86VK4 478 aa12.08□□□□□ -0.48
USHBP1-201ENST00000252597 APOBEC3FQ8IUX4 373 aaKnown RBP12.08□□□□□ -0.48
USHBP1-201ENST00000252597 MARVELD2Q8N4S9 558 aa12.08□□□□□ -0.48
USHBP1-201ENST00000252597 B3GALNT2Q8NCR0 500 aa12.08□□□□□ -0.48
USHBP1-201ENST00000252597 ADCY4Q8NFM4 1077 aa12.08□□□□□ -0.48
USHBP1-201ENST00000252597 DNAJB3Q8WWF6 145 aa12.08□□□□□ -0.48
USHBP1-201ENST00000252597 WNT8BQ93098 351 aa12.08□□□□□ -0.48
USHBP1-201ENST00000252597 PBXIP1Q96AQ6 731 aa12.08□□□□□ -0.48
USHBP1-201ENST00000252597 MLPHQ9BV36 600 aaPredicted RBP12.08□□□□□ -0.48
USHBP1-201ENST00000252597 DRC3Q9H069 523 aa12.08□□□□□ -0.48
USHBP1-201ENST00000252597 POLR1BQ9H9Y6 1135 aa12.08□□□□□ -0.48
USHBP1-201ENST00000252597 RBM22Q9NW64 420 aaKnown RBP eCLIP12.08□□□□□ -0.48
USHBP1-201ENST00000252597 RIMS3Q9UJD0 308 aa12.08□□□□□ -0.48
USHBP1-201ENST00000252597 CROTQ9UKG9 612 aa12.08□□□□□ -0.48
USHBP1-201ENST00000252597 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.08□□□□□ -0.48
USHBP1-201ENST00000252597 ANGPT2O15123 496 aa12.08□□□□□ -0.48
USHBP1-201ENST00000252597 MSI1O43347 362 aaKnown RBP12.08□□□□□ -0.48
USHBP1-201ENST00000252597 GFAPP14136 432 aa12.08□□□□□ -0.48
USHBP1-201ENST00000252597 ZNF23P17027 643 aa12.08□□□□□ -0.48
USHBP1-201ENST00000252597 CDH17Q12864 832 aa12.08□□□□□ -0.48
USHBP1-201ENST00000252597 TRAF2Q12933 501 aa12.08□□□□□ -0.48
USHBP1-201ENST00000252597 PTPRCAPQ14761 206 aa12.08□□□□□ -0.48
USHBP1-201ENST00000252597 ARL13BQ3SXY8 428 aa12.08□□□□□ -0.48
USHBP1-201ENST00000252597 KLHL35Q6PF15 583 aa12.08□□□□□ -0.48
USHBP1-201ENST00000252597 ADGRG6Q86SQ4 1221 aa12.08□□□□□ -0.48
USHBP1-201ENST00000252597 AFAP1L2Q8N4X5 818 aa12.08□□□□□ -0.48
USHBP1-201ENST00000252597 ATPAF2Q8N5M1 289 aa12.08□□□□□ -0.48
USHBP1-201ENST00000252597 KLHL5Q96PQ7 755 aa12.08□□□□□ -0.48
USHBP1-201ENST00000252597 ZDHHC7Q9NXF8 308 aa12.08□□□□□ -0.48
USHBP1-201ENST00000252597 GOLGA4Q13439 2230 aaKnown RBP12.08□□□□□ -0.48
USHBP1-201ENST00000252597 LTBP3Q9NS15 1303 aa12.08□□□□□ -0.48
USHBP1-201ENST00000252597 C1orf232A0A0U1RR37 186 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms