RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 CST9Q5W186 159 aa13.79□□□□□ -0.2
LDLR-201ENST00000252444 PEX13Q92968 403 aa13.79□□□□□ -0.2
LDLR-201ENST00000252444 DLEC1Q9Y238 1755 aa13.79□□□□□ -0.2
LDLR-201ENST00000252444 PER2O15055 1255 aa13.79□□□□□ -0.2
LDLR-201ENST00000252444 CXCR3P49682 368 aa13.79□□□□□ -0.2
LDLR-201ENST00000252444 SPDYAQ5MJ70 313 aa13.79□□□□□ -0.2
LDLR-201ENST00000252444 TMTC4Q5T4D3 741 aa13.79□□□□□ -0.2
LDLR-201ENST00000252444 ADCK2Q7Z695 626 aa13.79□□□□□ -0.2
LDLR-201ENST00000252444 TDRPQ86YL5 185 aa13.79□□□□□ -0.2
LDLR-201ENST00000252444 HSD3B7Q9H2F3 369 aa13.79□□□□□ -0.2
LDLR-201ENST00000252444 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.79□□□□□ -0.2
LDLR-201ENST00000252444 CLCA2Q9UQC9 943 aa13.79□□□□□ -0.2
LDLR-201ENST00000252444 E2F8A0AVK6 867 aa13.79□□□□□ -0.2
LDLR-201ENST00000252444 MTMR11A4FU01 709 aa13.79□□□□□ -0.2
LDLR-201ENST00000252444 C1RP00736 705 aa13.79□□□□□ -0.2
LDLR-201ENST00000252444 DGKGP49619 791 aa13.79□□□□□ -0.2
LDLR-201ENST00000252444 HPCAP84074 193 aa13.79□□□□□ -0.2
LDLR-201ENST00000252444 TPGS1Q6ZTW0 290 aa13.79□□□□□ -0.2
LDLR-201ENST00000252444 SLC2A13Q96QE2 648 aa13.79□□□□□ -0.2
LDLR-201ENST00000252444 EPC1Q9H2F5 836 aa13.79□□□□□ -0.2
LDLR-201ENST00000252444 ZDHHC7Q9NXF8 308 aa13.79□□□□□ -0.2
LDLR-201ENST00000252444 CPQQ9Y646 472 aa13.79□□□□□ -0.2
LDLR-201ENST00000252444 GSTM1P09488 218 aa13.79□□□□□ -0.2
LDLR-201ENST00000252444 WNT3AP56704 352 aa13.79□□□□□ -0.2
LDLR-201ENST00000252444 GSTM4Q03013 218 aa13.79□□□□□ -0.2
LDLR-201ENST00000252444 RARS2Q5T160 578 aaKnown RBP13.79□□□□□ -0.2
LDLR-201ENST00000252444 LLGL2Q6P1M3 1020 aa13.79□□□□□ -0.2
LDLR-201ENST00000252444 DNAJB7Q7Z6W7 309 aaPredicted RBP13.79□□□□□ -0.2
LDLR-201ENST00000252444 PHACTR4Q8IZ21 702 aa13.79□□□□□ -0.2
LDLR-201ENST00000252444 NSL1Q96IY1 281 aa13.79□□□□□ -0.2
LDLR-201ENST00000252444 RAB11FIP5Q9BXF6 653 aa13.79□□□□□ -0.2
LDLR-201ENST00000252444 MMADHCQ9H3L0 296 aaPredicted RBP13.79□□□□□ -0.2
LDLR-201ENST00000252444 DPEP3Q9H4B8 488 aa13.79□□□□□ -0.2
LDLR-201ENST00000252444 ARMC7Q9H6L4 198 aa13.79□□□□□ -0.2
LDLR-201ENST00000252444 RGS14O43566 566 aa13.78□□□□□ -0.2
LDLR-201ENST00000252444 PEX10O60683 326 aa13.78□□□□□ -0.2
LDLR-201ENST00000252444 ERVK-10P10266 1014 aa13.78□□□□□ -0.2
LDLR-201ENST00000252444 ATP5F1P24539 256 aaPredicted RBP13.78□□□□□ -0.2
LDLR-201ENST00000252444 HSPA13P48723 471 aa13.78□□□□□ -0.2
LDLR-201ENST00000252444 CYLC2Q14093 348 aaPredicted RBP13.78□□□□□ -0.2
LDLR-201ENST00000252444 A0A096LPK6 155 aa13.78□□□□□ -0.2
LDLR-201ENST00000252444 GPR1P46091 355 aa13.78□□□□□ -0.2
LDLR-201ENST00000252444 PTAR1Q7Z6K3 402 aaPredicted RBP13.78□□□□□ -0.2
LDLR-201ENST00000252444 PRPF39Q86UA1 669 aaKnown RBP13.78□□□□□ -0.2
LDLR-201ENST00000252444 OR4L1Q8NH43 312 aa13.78□□□□□ -0.2
LDLR-201ENST00000252444 MRPL46Q9H2W6 279 aaKnown RBP13.78□□□□□ -0.2
LDLR-201ENST00000252444 RHOJQ9H4E5 214 aa13.78□□□□□ -0.2
LDLR-201ENST00000252444 RXFP1Q9HBX9 757 aa13.78□□□□□ -0.2
LDLR-201ENST00000252444 ARHGAP26Q9UNA1 814 aa13.78□□□□□ -0.2
LDLR-201ENST00000252444 KCNK1O00180 336 aa13.78□□□□□ -0.2
LDLR-201ENST00000252444 TRAFD1O14545 582 aaPredicted RBP13.78□□□□□ -0.2
LDLR-201ENST00000252444 INSIG1O15503 277 aa13.78□□□□□ -0.2
LDLR-201ENST00000252444 VAPBO95292 243 aa13.78□□□□□ -0.2
LDLR-201ENST00000252444 ERVK-21P61565 698 aa13.78□□□□□ -0.2
LDLR-201ENST00000252444 USP4Q13107 963 aa13.78□□□□□ -0.2
LDLR-201ENST00000252444 RAB33AQ14088 237 aa13.78□□□□□ -0.2
LDLR-201ENST00000252444 TAF1AQ15573 450 aaPredicted RBP13.78□□□□□ -0.2
LDLR-201ENST00000252444 PLEKHG4Q58EX7 1191 aa13.78□□□□□ -0.2
LDLR-201ENST00000252444 SCLYQ96I15 445 aa13.78□□□□□ -0.2
LDLR-201ENST00000252444 FAM111AQ96PZ2 611 aa13.78□□□□□ -0.2
LDLR-201ENST00000252444 ELOVL6Q9H5J4 265 aa13.78□□□□□ -0.2
LDLR-201ENST00000252444 GGA2Q9UJY4 613 aa13.78□□□□□ -0.2
LDLR-201ENST00000252444 COL11A2P13942 1736 aaPredicted RBP13.78□□□□□ -0.2
LDLR-201ENST00000252444 SCN4AP35499 1836 aa13.78□□□□□ -0.2
LDLR-201ENST00000252444 M0R3G1 203 aa13.78□□□□□ -0.2
LDLR-201ENST00000252444 SGTAO43765 313 aa13.78□□□□□ -0.2
LDLR-201ENST00000252444 SUPT7LO94864 414 aa13.78□□□□□ -0.2
LDLR-201ENST00000252444 TRIM16O95361 564 aa13.78□□□□□ -0.2
LDLR-201ENST00000252444 ZNF30P17039 623 aa13.78□□□□□ -0.2
LDLR-201ENST00000252444 MZF1P28698 734 aaPredicted RBP13.78□□□□□ -0.2
LDLR-201ENST00000252444 ESRRGP62508 458 aa13.78□□□□□ -0.2
LDLR-201ENST00000252444 SEMA5AQ13591 1074 aa13.78□□□□□ -0.2
LDLR-201ENST00000252444 EOGTQ5NDL2 527 aa13.78□□□□□ -0.2
LDLR-201ENST00000252444 FIZ1Q96SL8 496 aa13.78□□□□□ -0.2
LDLR-201ENST00000252444 CDHR5Q9HBB8 845 aa13.78□□□□□ -0.2
LDLR-201ENST00000252444 ABCF3Q9NUQ8 709 aa13.78□□□□□ -0.2
LDLR-201ENST00000252444 TMEM248Q9NWD8 314 aa13.78□□□□□ -0.2
LDLR-201ENST00000252444 DMGDHQ9UI17 866 aaKnown RBP13.78□□□□□ -0.2
LDLR-201ENST00000252444 SIX4Q9UIU6 781 aa13.78□□□□□ -0.2
LDLR-201ENST00000252444 SNX6Q9UNH7 406 aa13.78□□□□□ -0.2
LDLR-201ENST00000252444 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.78□□□□□ -0.2
LDLR-201ENST00000252444 TXNDC9O14530 226 aa13.77□□□□□ -0.2
LDLR-201ENST00000252444 MEFVO15553 781 aaPredicted RBP13.77□□□□□ -0.2
LDLR-201ENST00000252444 ALOX15P16050 662 aaPredicted RBP13.77□□□□□ -0.2
LDLR-201ENST00000252444 HOXD13P35453 343 aa13.77□□□□□ -0.2
LDLR-201ENST00000252444 RAB10P61026 200 aa13.77□□□□□ -0.2
LDLR-201ENST00000252444 DMTNQ08495 405 aa13.77□□□□□ -0.2
LDLR-201ENST00000252444 LAPTM5Q13571 262 aa13.77□□□□□ -0.2
LDLR-201ENST00000252444 TEAD4Q15561 434 aa13.77□□□□□ -0.2
LDLR-201ENST00000252444 GPR33Q49SQ1 333 aa13.77□□□□□ -0.2
LDLR-201ENST00000252444 LDLRAP1Q5SW96 308 aa13.77□□□□□ -0.2
LDLR-201ENST00000252444 C1orf146Q5VVC0 180 aa13.77□□□□□ -0.2
LDLR-201ENST00000252444 OLFML1Q6UWY5 402 aa13.77□□□□□ -0.2
LDLR-201ENST00000252444 PIWIL4Q7Z3Z4 852 aaKnown RBP13.77□□□□□ -0.2
LDLR-201ENST00000252444 EPS8L3Q8TE67 593 aaKnown RBP13.77□□□□□ -0.2
LDLR-201ENST00000252444 SERAC1Q96JX3 654 aa13.77□□□□□ -0.2
LDLR-201ENST00000252444 COPS8Q99627 209 aa13.77□□□□□ -0.2
LDLR-201ENST00000252444 NOP53Q9NZM5 478 aaKnown RBP13.77□□□□□ -0.2
LDLR-201ENST00000252444 SFMBT1Q9UHJ3 866 aa13.77□□□□□ -0.2
LDLR-201ENST00000252444 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.77□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms