RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 LRRC37BQ96QE4 947 aa8.79□□□□□ -1
VPS4B-201ENST00000238497 HNRNPABQ99729 332 aaKnown RBP8.79□□□□□ -1
VPS4B-201ENST00000238497 ACSS3Q9H6R3 686 aa8.79□□□□□ -1
VPS4B-201ENST00000238497 MANSC1Q9H8J5 431 aa8.79□□□□□ -1
VPS4B-201ENST00000238497 CPSF2Q9P2I0 782 aaKnown RBP8.79□□□□□ -1
VPS4B-201ENST00000238497 ARL2BPQ9Y2Y0 163 aa8.79□□□□□ -1
VPS4B-201ENST00000238497 FIS1Q9Y3D6 152 aa8.79□□□□□ -1
VPS4B-201ENST00000238497 ARIH1Q9Y4X5 557 aaPredicted RBP8.79□□□□□ -1
VPS4B-201ENST00000238497 FAM163BP0C2L3 166 aa8.79□□□□□ -1
VPS4B-201ENST00000238497 TYK2P29597 1187 aa8.79□□□□□ -1
VPS4B-201ENST00000238497 CXCL12P48061 93 aa8.79□□□□□ -1
VPS4B-201ENST00000238497 SEC13P55735 322 aa8.79□□□□□ -1
VPS4B-201ENST00000238497 MXRA7P84157 204 aa8.79□□□□□ -1
VPS4B-201ENST00000238497 POU6F1Q14863 301 aa8.79□□□□□ -1
VPS4B-201ENST00000238497 PDGFRLQ15198 375 aa8.79□□□□□ -1
VPS4B-201ENST00000238497 PKDCCQ504Y2 493 aa8.79□□□□□ -1
VPS4B-201ENST00000238497 PPM1JQ5JR12 505 aa8.79□□□□□ -1
VPS4B-201ENST00000238497 CERCAMQ5T4B2 595 aa8.79□□□□□ -1
VPS4B-201ENST00000238497 ARHGAP17Q68EM7 881 aa8.79□□□□□ -1
VPS4B-201ENST00000238497 CAND1Q86VP6 1230 aaKnown RBP8.79□□□□□ -1
VPS4B-201ENST00000238497 SPATS2Q86XZ4 545 aaKnown RBP8.79□□□□□ -1
VPS4B-201ENST00000238497 NAT16Q8N8M0 369 aa8.79□□□□□ -1
VPS4B-201ENST00000238497 RIN3Q8TB24 985 aa8.79□□□□□ -1
VPS4B-201ENST00000238497 ERLEC1Q96DZ1 483 aa8.79□□□□□ -1
VPS4B-201ENST00000238497 CHFRQ96EP1 664 aa8.79□□□□□ -1
VPS4B-201ENST00000238497 ZNF670Q9BS34 389 aa8.79□□□□□ -1
VPS4B-201ENST00000238497 TMEM109Q9BVC6 243 aa8.79□□□□□ -1
VPS4B-201ENST00000238497 FOXP3Q9BZS1 431 aa8.79□□□□□ -1
VPS4B-201ENST00000238497 FBXO44Q9H4M3 255 aa8.79□□□□□ -1
VPS4B-201ENST00000238497 ANLNQ9NQW6 1124 aa8.79□□□□□ -1
VPS4B-201ENST00000238497 ARMCX1Q9P291 453 aa8.79□□□□□ -1
VPS4B-201ENST00000238497 COL4A3Q01955 1670 aa8.79□□□□□ -1
VPS4B-201ENST00000238497 OTOL1A6NHN0 477 aaPredicted RBP8.79□□□□□ -1
VPS4B-201ENST00000238497 A8MUI8 341 aa8.79□□□□□ -1
VPS4B-201ENST00000238497 TROVE2P10155 538 aaKnown RBP eCLIP8.79□□□□□ -1
VPS4B-201ENST00000238497 MCCD1P59942 119 aaPredicted RBP8.79□□□□□ -1
VPS4B-201ENST00000238497 EFEMP1Q12805 493 aa8.79□□□□□ -1
VPS4B-201ENST00000238497 C2orf27AQ580R0 203 aa8.79□□□□□ -1
VPS4B-201ENST00000238497 HSP90AA5PQ58FG0 334 aa8.79□□□□□ -1
VPS4B-201ENST00000238497 MTDHQ86UE4 582 aaKnown RBP8.79□□□□□ -1
VPS4B-201ENST00000238497 NUDCD3Q8IVD9 361 aa8.79□□□□□ -1
VPS4B-201ENST00000238497 SPATA6LQ8N4H0 392 aa8.79□□□□□ -1
VPS4B-201ENST00000238497 PDZD8Q8NEN9 1154 aa8.79□□□□□ -1
VPS4B-201ENST00000238497 PTPRN2Q92932 1015 aa8.79□□□□□ -1
VPS4B-201ENST00000238497 ATP2A3Q93084 1043 aa8.79□□□□□ -1
VPS4B-201ENST00000238497 HPS4Q9NQG7 708 aa8.79□□□□□ -1
VPS4B-201ENST00000238497 TLR8Q9NR97 1041 aaKnown RBP8.79□□□□□ -1
VPS4B-201ENST00000238497 KLC4Q9NSK0 619 aa8.79□□□□□ -1
VPS4B-201ENST00000238497 OBP2AQ9NY56 170 aa8.79□□□□□ -1
VPS4B-201ENST00000238497 VANGL2Q9ULK5 521 aa8.79□□□□□ -1
VPS4B-201ENST00000238497 ZBTB24O43167 697 aaPredicted RBP8.78□□□□□ -1
VPS4B-201ENST00000238497 BUD23O43709 281 aaKnown RBP8.78□□□□□ -1
VPS4B-201ENST00000238497 NFATC1O95644 943 aa8.78□□□□□ -1
VPS4B-201ENST00000238497 MT-CYBP00156 380 aaPredicted RBP8.78□□□□□ -1
VPS4B-201ENST00000238497 SNRPAP09012 282 aaKnown RBP8.78□□□□□ -1
VPS4B-201ENST00000238497 SP9P0CG40 484 aa8.78□□□□□ -1
VPS4B-201ENST00000238497 ZFXP17010 805 aaPredicted RBP8.78□□□□□ -1
VPS4B-201ENST00000238497 GLRBP48167 497 aa8.78□□□□□ -1
VPS4B-201ENST00000238497 PGFP49763 221 aa8.78□□□□□ -1
VPS4B-201ENST00000238497 NUBP1P53384 320 aa8.78□□□□□ -1
VPS4B-201ENST00000238497 SESN3P58005 492 aa8.78□□□□□ -1
VPS4B-201ENST00000238497 DAOAP59103 153 aa8.78□□□□□ -1
VPS4B-201ENST00000238497 MAXP61244 160 aa8.78□□□□□ -1
VPS4B-201ENST00000238497 PDK1Q15118 436 aa8.78□□□□□ -1
VPS4B-201ENST00000238497 CHI3L2Q15782 390 aa8.78□□□□□ -1
VPS4B-201ENST00000238497 ARHGAP36Q6ZRI8 547 aa8.78□□□□□ -1
VPS4B-201ENST00000238497 CDHR3Q6ZTQ4 885 aa8.78□□□□□ -1
VPS4B-201ENST00000238497 ASCL5Q7RTU5 278 aa8.78□□□□□ -1
VPS4B-201ENST00000238497 CCDC91Q7Z6B0 441 aa8.78□□□□□ -1
VPS4B-201ENST00000238497 CMC1Q7Z7K0 106 aa8.78□□□□□ -1
VPS4B-201ENST00000238497 RASSF3Q86WH2 238 aa8.78□□□□□ -1
VPS4B-201ENST00000238497 ZNF567Q8N184 647 aa8.78□□□□□ -1
VPS4B-201ENST00000238497 AGGF1Q8N302 714 aaeCLIP8.78□□□□□ -1
VPS4B-201ENST00000238497 ZMIZ2Q8NF64 920 aa8.78□□□□□ -1
VPS4B-201ENST00000238497 CENPTQ96BT3 561 aa8.78□□□□□ -1
VPS4B-201ENST00000238497 SRPK1Q96SB4 655 aaKnown RBP8.78□□□□□ -1
VPS4B-201ENST00000238497 P2RY13Q9BPV8 354 aa8.78□□□□□ -1
VPS4B-201ENST00000238497 FAM83CQ9BQN1 747 aa8.78□□□□□ -1
VPS4B-201ENST00000238497 TSSK1BQ9BXA7 367 aa8.78□□□□□ -1
VPS4B-201ENST00000238497 ZNF358Q9NW07 568 aa8.78□□□□□ -1
VPS4B-201ENST00000238497 POLR3BQ9NW08 1133 aaPredicted RBP8.78□□□□□ -1
VPS4B-201ENST00000238497 SYBUQ9NX95 663 aa8.78□□□□□ -1
VPS4B-201ENST00000238497 NCDNQ9UBB6 729 aa8.78□□□□□ -1
VPS4B-201ENST00000238497 RAB23Q9ULC3 237 aa8.78□□□□□ -1
VPS4B-201ENST00000238497 FZD10Q9ULW2 581 aa8.78□□□□□ -1
VPS4B-201ENST00000238497 EFR3BQ9Y2G0 817 aa8.78□□□□□ -1
VPS4B-201ENST00000238497 USP34Q70CQ2 3546 aa8.78□□□□□ -1
VPS4B-201ENST00000238497 ARHGAP42A6NI28 874 aa8.78□□□□□ -1
VPS4B-201ENST00000238497 TRDMT1O14717 391 aaKnown RBP8.78□□□□□ -1
VPS4B-201ENST00000238497 PPP1R12AO14974 1030 aaPredicted RBP8.78□□□□□ -1
VPS4B-201ENST00000238497 COCHO43405 550 aa8.78□□□□□ -1
VPS4B-201ENST00000238497 DNAJC6O75061 913 aa8.78□□□□□ -1
VPS4B-201ENST00000238497 KRT38O76015 456 aa8.78□□□□□ -1
VPS4B-201ENST00000238497 LRIG2O94898 1065 aa8.78□□□□□ -1
VPS4B-201ENST00000238497 APOEP02649 317 aa8.78□□□□□ -1
VPS4B-201ENST00000238497 GJA4P35212 333 aa8.78□□□□□ -1
VPS4B-201ENST00000238497 TPGS1Q6ZTW0 290 aa8.78□□□□□ -1
VPS4B-201ENST00000238497 OTOAQ7RTW8 1153 aa8.78□□□□□ -1
VPS4B-201ENST00000238497 SLC26A11Q86WA9 606 aa8.78□□□□□ -1
VPS4B-201ENST00000238497 ZDHHC17Q8IUH5 632 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms