RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 PLEKP08567 350 aaPredicted RBP12.12□□□□□ -0.47
UPF3B-204ENST00000619445 GLDCP23378 1020 aa12.12□□□□□ -0.47
UPF3B-204ENST00000619445 HTR7P34969 479 aa12.12□□□□□ -0.47
UPF3B-204ENST00000619445 ACTN2P35609 894 aa12.12□□□□□ -0.47
UPF3B-204ENST00000619445 YBEYP58557 167 aaPredicted RBP12.12□□□□□ -0.47
UPF3B-204ENST00000619445 GRM3Q14832 879 aa12.12□□□□□ -0.47
UPF3B-204ENST00000619445 CCDC14Q49A88 953 aa12.12□□□□□ -0.47
UPF3B-204ENST00000619445 INO80DQ53TQ3 878 aaPredicted RBP12.12□□□□□ -0.47
UPF3B-204ENST00000619445 C2CD6Q53TS8 623 aa12.12□□□□□ -0.47
UPF3B-204ENST00000619445 EFHC2Q5JST6 749 aa12.12□□□□□ -0.47
UPF3B-204ENST00000619445 TRNP1Q6NT89 227 aa12.12□□□□□ -0.47
UPF3B-204ENST00000619445 GCNT7Q6ZNI0 430 aa12.12□□□□□ -0.47
UPF3B-204ENST00000619445 Q6ZSR6 202 aa12.12□□□□□ -0.47
UPF3B-204ENST00000619445 PTAR1Q7Z6K3 402 aaPredicted RBP12.12□□□□□ -0.47
UPF3B-204ENST00000619445 NLRP14Q86W24 1093 aa12.12□□□□□ -0.47
UPF3B-204ENST00000619445 PARGQ86W56 976 aa12.12□□□□□ -0.47
UPF3B-204ENST00000619445 PHF13Q86YI8 300 aaPredicted RBP12.12□□□□□ -0.47
UPF3B-204ENST00000619445 LSMEM2Q8N112 164 aa12.12□□□□□ -0.47
UPF3B-204ENST00000619445 SLC25A45Q8N413 288 aa12.12□□□□□ -0.47
UPF3B-204ENST00000619445 EMC1Q8N766 993 aa12.12□□□□□ -0.47
UPF3B-204ENST00000619445 C3orf20Q8ND61 904 aa12.12□□□□□ -0.47
UPF3B-204ENST00000619445 SLC20A1Q8WUM9 679 aa12.12□□□□□ -0.47
UPF3B-204ENST00000619445 BTN2A2Q8WVV5 523 aa12.12□□□□□ -0.47
UPF3B-204ENST00000619445 HNRNPLLQ8WVV9 542 aaKnown RBP12.12□□□□□ -0.47
UPF3B-204ENST00000619445 ARHGEF2Q92974 986 aaKnown RBP12.12□□□□□ -0.47
UPF3B-204ENST00000619445 GRAMD1AQ96CP6 724 aa12.12□□□□□ -0.47
UPF3B-204ENST00000619445 PCMTD1Q96MG8 357 aaPredicted RBP12.12□□□□□ -0.47
UPF3B-204ENST00000619445 GBP4Q96PP9 640 aa12.12□□□□□ -0.47
UPF3B-204ENST00000619445 C11orf70Q9BRQ4 267 aa12.12□□□□□ -0.47
UPF3B-204ENST00000619445 SELENOOQ9BVL4 669 aa12.12□□□□□ -0.47
UPF3B-204ENST00000619445 C1QTNF2Q9BXJ5 285 aa12.12□□□□□ -0.47
UPF3B-204ENST00000619445 ZDHHC6Q9H6R6 413 aa12.12□□□□□ -0.47
UPF3B-204ENST00000619445 TMPRSS4Q9NRS4 437 aa12.12□□□□□ -0.47
UPF3B-204ENST00000619445 GPR27Q9NS67 375 aa12.12□□□□□ -0.47
UPF3B-204ENST00000619445 ANO10Q9NW15 660 aa12.12□□□□□ -0.47
UPF3B-204ENST00000619445 IPO11Q9UI26 975 aaKnown RBP12.12□□□□□ -0.47
UPF3B-204ENST00000619445 ZFR2Q9UPR6 939 aaKnown RBP12.12□□□□□ -0.47
UPF3B-204ENST00000619445 SPTY2D1-AS1A0A0U1RR47 76 aa12.11□□□□□ -0.47
UPF3B-204ENST00000619445 SIGLEC16A6NMB1 481 aa12.11□□□□□ -0.47
UPF3B-204ENST00000619445 EIF4E1BA6NMX2 242 aaKnown RBP12.11□□□□□ -0.47
UPF3B-204ENST00000619445 C16orf96A6NNT2 1141 aa12.11□□□□□ -0.47
UPF3B-204ENST00000619445 EIF3CLB5ME19 914 aaKnown RBP12.11□□□□□ -0.47
UPF3B-204ENST00000619445 TRIM38O00635 465 aa12.11□□□□□ -0.47
UPF3B-204ENST00000619445 KDELR3O43731 214 aa12.11□□□□□ -0.47
UPF3B-204ENST00000619445 SDC3O75056 442 aa12.11□□□□□ -0.47
UPF3B-204ENST00000619445 LRIG2O94898 1065 aa12.11□□□□□ -0.47
UPF3B-204ENST00000619445 CSF2P04141 144 aa12.11□□□□□ -0.47
UPF3B-204ENST00000619445 UNGP13051 313 aaPredicted RBP12.11□□□□□ -0.47
UPF3B-204ENST00000619445 NME1P15531 152 aaKnown RBP12.11□□□□□ -0.47
UPF3B-204ENST00000619445 GPD1P21695 349 aa12.11□□□□□ -0.47
UPF3B-204ENST00000619445 MYL5Q02045 173 aa12.11□□□□□ -0.47
UPF3B-204ENST00000619445 PTK2BQ14289 1009 aa12.11□□□□□ -0.47
UPF3B-204ENST00000619445 ACAP1Q15027 740 aa12.11□□□□□ -0.47
UPF3B-204ENST00000619445 SEL1L3Q68CR1 1132 aa12.11□□□□□ -0.47
UPF3B-204ENST00000619445 ZCCHC8Q6NZY4 707 aaKnown RBP12.11□□□□□ -0.47
UPF3B-204ENST00000619445 SASS6Q6UVJ0 657 aa12.11□□□□□ -0.47
UPF3B-204ENST00000619445 RBM43Q6ZSC3 357 aaKnown RBP12.11□□□□□ -0.47
UPF3B-204ENST00000619445 PARS2Q7L3T8 475 aaKnown RBP12.11□□□□□ -0.47
UPF3B-204ENST00000619445 SLFN11Q7Z7L1 901 aa12.11□□□□□ -0.47
UPF3B-204ENST00000619445 RYBPQ8N488 228 aaPredicted RBP12.11□□□□□ -0.47
UPF3B-204ENST00000619445 TPCN2Q8NHX9 752 aa12.11□□□□□ -0.47
UPF3B-204ENST00000619445 SNIP1Q8TAD8 396 aaKnown RBP12.11□□□□□ -0.47
UPF3B-204ENST00000619445 FAM172AQ8WUF8 416 aa12.11□□□□□ -0.47
UPF3B-204ENST00000619445 KLK6Q92876 244 aa12.11□□□□□ -0.47
UPF3B-204ENST00000619445 GLMNQ92990 594 aa12.11□□□□□ -0.47
UPF3B-204ENST00000619445 TBATAQ96M53 351 aa12.11□□□□□ -0.47
UPF3B-204ENST00000619445 GDAP1L1Q96MZ0 367 aa12.11□□□□□ -0.47
UPF3B-204ENST00000619445 DEPDC7Q96QD5 511 aa12.11□□□□□ -0.47
UPF3B-204ENST00000619445 EIF3CQ99613 913 aaKnown RBP12.11□□□□□ -0.47
UPF3B-204ENST00000619445 EPAS1Q99814 870 aa12.11□□□□□ -0.47
UPF3B-204ENST00000619445 MYOCQ99972 504 aa12.11□□□□□ -0.47
UPF3B-204ENST00000619445 CATSPERBQ9H7T0 1116 aa12.11□□□□□ -0.47
UPF3B-204ENST00000619445 NLRC4Q9NPP4 1024 aa12.11□□□□□ -0.47
UPF3B-204ENST00000619445 DNAJC28Q9NX36 388 aa12.11□□□□□ -0.47
UPF3B-204ENST00000619445 DNAI1Q9UI46 699 aa12.11□□□□□ -0.47
UPF3B-204ENST00000619445 CA5BQ9Y2D0 317 aa12.11□□□□□ -0.47
UPF3B-204ENST00000619445 FCF1Q9Y324 198 aaKnown RBP12.11□□□□□ -0.47
UPF3B-204ENST00000619445 LRRC10BA6NIK2 292 aa12.1□□□□□ -0.47
UPF3B-204ENST00000619445 LGALS16A8MUM7 142 aa12.1□□□□□ -0.47
UPF3B-204ENST00000619445 KRIT1O00522 736 aa12.1□□□□□ -0.47
UPF3B-204ENST00000619445 TPP1O14773 563 aa12.1□□□□□ -0.47
UPF3B-204ENST00000619445 FGF10O15520 208 aaPredicted RBP12.1□□□□□ -0.47
UPF3B-204ENST00000619445 IGSF6O95976 241 aa12.1□□□□□ -0.47
UPF3B-204ENST00000619445 PAK4O96013 591 aaPredicted RBP12.1□□□□□ -0.47
UPF3B-204ENST00000619445 MT-CO3P00414 261 aa12.1□□□□□ -0.47
UPF3B-204ENST00000619445 CHRNB2P17787 502 aa12.1□□□□□ -0.47
UPF3B-204ENST00000619445 CDK11BP21127 795 aaKnown RBP12.1□□□□□ -0.47
UPF3B-204ENST00000619445 ACVRL1P37023 503 aa12.1□□□□□ -0.47
UPF3B-204ENST00000619445 ANP32AP39687 249 aaKnown RBP12.1□□□□□ -0.47
UPF3B-204ENST00000619445 ZNF143P52747 638 aaPredicted RBP12.1□□□□□ -0.47
UPF3B-204ENST00000619445 COPB1P53618 953 aaKnown RBP12.1□□□□□ -0.47
UPF3B-204ENST00000619445 HDAC4P56524 1084 aa12.1□□□□□ -0.47
UPF3B-204ENST00000619445 YPEL5P62699 121 aa12.1□□□□□ -0.47
UPF3B-204ENST00000619445 INSM1Q01101 510 aaPredicted RBP12.1□□□□□ -0.47
UPF3B-204ENST00000619445 CLEC16AQ2KHT3 1053 aa12.1□□□□□ -0.47
UPF3B-204ENST00000619445 C15orf59Q2T9L4 293 aaPredicted RBP12.1□□□□□ -0.47
UPF3B-204ENST00000619445 MYLK3Q32MK0 819 aa12.1□□□□□ -0.47
UPF3B-204ENST00000619445 PARP15Q460N3 678 aa12.1□□□□□ -0.47
UPF3B-204ENST00000619445 ARTNQ5T4W7 220 aa12.1□□□□□ -0.47
UPF3B-204ENST00000619445 DNAJC24Q6P3W2 148 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms