RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 CARD16Q5EG05 197 aa16.27■□□□□ 0.2
BRCA1-228ENST00000618469 ARSIQ5FYB1 569 aa16.27■□□□□ 0.2
BRCA1-228ENST00000618469 H2AFVQ71UI9 128 aa16.27■□□□□ 0.2
BRCA1-228ENST00000618469 RYBPQ8N488 228 aaPredicted RBP16.27■□□□□ 0.2
BRCA1-228ENST00000618469 MINDY1Q8N5J2 469 aa16.27■□□□□ 0.2
BRCA1-228ENST00000618469 OR6K2Q8NGY2 324 aa16.27■□□□□ 0.2
BRCA1-228ENST00000618469 FAM131CQ96AQ9 280 aa16.27■□□□□ 0.2
BRCA1-228ENST00000618469 ARRDC3Q96B67 414 aa16.27■□□□□ 0.2
BRCA1-228ENST00000618469 PPP1R16AQ96I34 528 aa16.27■□□□□ 0.2
BRCA1-228ENST00000618469 CCDC42Q96M95 316 aa16.27■□□□□ 0.2
BRCA1-228ENST00000618469 KLC2Q9H0B6 622 aa16.27■□□□□ 0.2
BRCA1-228ENST00000618469 ZDHHC6Q9H6R6 413 aa16.27■□□□□ 0.2
BRCA1-228ENST00000618469 NHEJ1Q9H9Q4 299 aaPredicted RBP16.27■□□□□ 0.2
BRCA1-228ENST00000618469 SPTLC3Q9NUV7 552 aa16.27■□□□□ 0.2
BRCA1-228ENST00000618469 DONSONQ9NYP3 566 aa16.27■□□□□ 0.2
BRCA1-228ENST00000618469 UVRAGQ9P2Y5 699 aa16.27■□□□□ 0.2
BRCA1-228ENST00000618469 WASF2Q9Y6W5 498 aa16.27■□□□□ 0.2
BRCA1-228ENST00000618469 H3BRJ5 948 aa16.26■□□□□ 0.19
BRCA1-228ENST00000618469 RNF103O00237 685 aa16.26■□□□□ 0.19
BRCA1-228ENST00000618469 PLRG1O43660 514 aaKnown RBP16.26■□□□□ 0.19
BRCA1-228ENST00000618469 ERCC2P18074 760 aa16.26■□□□□ 0.19
BRCA1-228ENST00000618469 GJC1P36383 396 aa16.26■□□□□ 0.19
BRCA1-228ENST00000618469 ARL4AP40617 200 aa16.26■□□□□ 0.19
BRCA1-228ENST00000618469 AFF3P51826 1226 aaKnown RBP16.26■□□□□ 0.19
BRCA1-228ENST00000618469 ZNF135P52742 658 aaPredicted RBP16.26■□□□□ 0.19
BRCA1-228ENST00000618469 DPYSQ14117 519 aa16.26■□□□□ 0.19
BRCA1-228ENST00000618469 PIP5KL1Q5T9C9 394 aa16.26■□□□□ 0.19
BRCA1-228ENST00000618469 TXNRD3NBQ6F5E7 133 aa16.26■□□□□ 0.19
BRCA1-228ENST00000618469 LAYNQ6UX15 382 aa16.26■□□□□ 0.19
BRCA1-228ENST00000618469 NPWQ8N729 165 aa16.26■□□□□ 0.19
BRCA1-228ENST00000618469 NETO2Q8NC67 525 aa16.26■□□□□ 0.19
BRCA1-228ENST00000618469 TMIEQ8NEW7 156 aa16.26■□□□□ 0.19
BRCA1-228ENST00000618469 C1orf216Q8TAB5 229 aa16.26■□□□□ 0.19
BRCA1-228ENST00000618469 MDM1Q8TC05 714 aa16.26■□□□□ 0.19
BRCA1-228ENST00000618469 ISG20Q96AZ6 181 aaKnown RBP16.26■□□□□ 0.19
BRCA1-228ENST00000618469 BBC3Q96PG8 261 aaPredicted RBP16.26■□□□□ 0.19
BRCA1-228ENST00000618469 HEPHQ9BQS7 1158 aa16.26■□□□□ 0.19
BRCA1-228ENST00000618469 LRRC19Q9H756 370 aa16.26■□□□□ 0.19
BRCA1-228ENST00000618469 TM9SF3Q9HD45 589 aa16.26■□□□□ 0.19
BRCA1-228ENST00000618469 CWC15Q9P013 229 aaKnown RBP16.26■□□□□ 0.19
BRCA1-228ENST00000618469 HECAQ9UBI9 543 aaPredicted RBP16.26■□□□□ 0.19
BRCA1-228ENST00000618469 BPTFQ12830 3046 aa16.25■□□□□ 0.19
BRCA1-228ENST00000618469 TBC1D3DA0A087WVF3 549 aa16.25■□□□□ 0.19
BRCA1-228ENST00000618469 TBC1D3IA0A087WXS9 549 aa16.25■□□□□ 0.19
BRCA1-228ENST00000618469 TBC1D3EA0A087X179 549 aa16.25■□□□□ 0.19
BRCA1-228ENST00000618469 TBC1D3KA0A087X1G2 549 aa16.25■□□□□ 0.19
BRCA1-228ENST00000618469 A0A1W2PPC4 97 aa16.25■□□□□ 0.19
BRCA1-228ENST00000618469 TBC1D3FA6NER0 549 aaPredicted RBP16.25■□□□□ 0.19
BRCA1-228ENST00000618469 TBC1D3LB9A6J9 549 aa16.25■□□□□ 0.19
BRCA1-228ENST00000618469 SH3BP5O60239 455 aa16.25■□□□□ 0.19
BRCA1-228ENST00000618469 OPHN1O60890 802 aa16.25■□□□□ 0.19
BRCA1-228ENST00000618469 GSRP00390 522 aa16.25■□□□□ 0.19
BRCA1-228ENST00000618469 TMEM253P0C7T8 217 aa16.25■□□□□ 0.19
BRCA1-228ENST00000618469 TBC1D3HP0C7X1 549 aa16.25■□□□□ 0.19
BRCA1-228ENST00000618469 RARAP10276 462 aa16.25■□□□□ 0.19
BRCA1-228ENST00000618469 CD59P13987 128 aa16.25■□□□□ 0.19
BRCA1-228ENST00000618469 NDST2P52849 883 aa16.25■□□□□ 0.19
BRCA1-228ENST00000618469 RHOAP61586 193 aa16.25■□□□□ 0.19
BRCA1-228ENST00000618469 SNRPD1P62314 119 aaKnown RBP16.25■□□□□ 0.19
BRCA1-228ENST00000618469 BOLA3Q53S33 107 aa16.25■□□□□ 0.19
BRCA1-228ENST00000618469 ATXN7L2Q5T6C5 722 aaPredicted RBP16.25■□□□□ 0.19
BRCA1-228ENST00000618469 TBC1D3GQ6DHY5 549 aa16.25■□□□□ 0.19
BRCA1-228ENST00000618469 TBC1D3CQ6IPX1 549 aa16.25■□□□□ 0.19
BRCA1-228ENST00000618469 RAB44Q7Z6P3 723 aaPredicted RBP16.25■□□□□ 0.19
BRCA1-228ENST00000618469 ADAT2Q7Z6V5 191 aaKnown RBP16.25■□□□□ 0.19
BRCA1-228ENST00000618469 CPNE8Q86YQ8 564 aa16.25■□□□□ 0.19
BRCA1-228ENST00000618469 TBC1D3Q8IZP1 549 aaPredicted RBP16.25■□□□□ 0.19
BRCA1-228ENST00000618469 OR2AP1Q8NGE2 309 aa16.25■□□□□ 0.19
BRCA1-228ENST00000618469 TEKT4Q8WW24 435 aa16.25■□□□□ 0.19
BRCA1-228ENST00000618469 COL26A1Q96A83 441 aa16.25■□□□□ 0.19
BRCA1-228ENST00000618469 GDAP1L1Q96MZ0 367 aa16.25■□□□□ 0.19
BRCA1-228ENST00000618469 SLC6A18Q96N87 628 aa16.25■□□□□ 0.19
BRCA1-228ENST00000618469 ORAI3Q9BRQ5 295 aa16.25■□□□□ 0.19
BRCA1-228ENST00000618469 SLC39A8Q9C0K1 460 aa16.25■□□□□ 0.19
BRCA1-228ENST00000618469 UBA2Q9UBT2 640 aaPredicted RBP16.25■□□□□ 0.19
BRCA1-228ENST00000618469 GCN1Q92616 2671 aaKnown RBP16.24■□□□□ 0.19
BRCA1-228ENST00000618469 A0A1B0GVT2 93 aa16.24■□□□□ 0.19
BRCA1-228ENST00000618469 ARHGAP42A6NI28 874 aa16.24■□□□□ 0.19
BRCA1-228ENST00000618469 TMEM110-MUSTN1A8MSY1 372 aa16.24■□□□□ 0.19
BRCA1-228ENST00000618469 DFFAO00273 331 aa16.24■□□□□ 0.19
BRCA1-228ENST00000618469 KRIT1O00522 736 aa16.24■□□□□ 0.19
BRCA1-228ENST00000618469 PROSCO94903 275 aa16.24■□□□□ 0.19
BRCA1-228ENST00000618469 IGSF6O95976 241 aa16.24■□□□□ 0.19
BRCA1-228ENST00000618469 ITGB7P26010 798 aa16.24■□□□□ 0.19
BRCA1-228ENST00000618469 MAT2AP31153 395 aaKnown RBP16.24■□□□□ 0.19
BRCA1-228ENST00000618469 GKP32189 559 aa16.24■□□□□ 0.19
BRCA1-228ENST00000618469 GRIA4P48058 902 aa16.24■□□□□ 0.19
BRCA1-228ENST00000618469 CSNK1EP49674 416 aaKnown RBP16.24■□□□□ 0.19
BRCA1-228ENST00000618469 CCR5P51681 352 aa16.24■□□□□ 0.19
BRCA1-228ENST00000618469 ZNF75DP51815 510 aa16.24■□□□□ 0.19
BRCA1-228ENST00000618469 KRT81Q14533 505 aa16.24■□□□□ 0.19
BRCA1-228ENST00000618469 TEAD4Q15561 434 aa16.24■□□□□ 0.19
BRCA1-228ENST00000618469 HADHQ16836 314 aaKnown RBP16.24■□□□□ 0.19
BRCA1-228ENST00000618469 ERN2Q76MJ5 926 aaKnown RBP16.24■□□□□ 0.19
BRCA1-228ENST00000618469 GAS2L3Q86XJ1 694 aa16.24■□□□□ 0.19
BRCA1-228ENST00000618469 MARCH9Q86YJ5 346 aa16.24■□□□□ 0.19
BRCA1-228ENST00000618469 ARHGAP12Q8IWW6 846 aa16.24■□□□□ 0.19
BRCA1-228ENST00000618469 TC2NQ8N9U0 490 aa16.24■□□□□ 0.19
BRCA1-228ENST00000618469 CASKIN2Q8WXE0 1202 aa16.24■□□□□ 0.19
BRCA1-228ENST00000618469 LRIG1Q96JA1 1093 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms