RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 AP3B1O00203 1094 aa12.74□□□□□ -0.37
LIG1-221ENST00000613670 TSPAN3O60637 253 aa12.74□□□□□ -0.37
LIG1-221ENST00000613670 RNASEH2AO75792 299 aaKnown RBP12.74□□□□□ -0.37
LIG1-221ENST00000613670 ATP5F1P24539 256 aaPredicted RBP12.74□□□□□ -0.37
LIG1-221ENST00000613670 ADCYAP1R1P41586 468 aa12.74□□□□□ -0.37
LIG1-221ENST00000613670 HARS2P49590 506 aaKnown RBP12.74□□□□□ -0.37
LIG1-221ENST00000613670 CCR3P51677 355 aa12.74□□□□□ -0.37
LIG1-221ENST00000613670 TRIM25Q14258 630 aaKnown RBP12.74□□□□□ -0.37
LIG1-221ENST00000613670 GRIK4Q16099 956 aa12.74□□□□□ -0.37
LIG1-221ENST00000613670 FAM91A1Q658Y4 838 aa12.74□□□□□ -0.37
LIG1-221ENST00000613670 SLC27A1Q6PCB7 646 aa12.74□□□□□ -0.37
LIG1-221ENST00000613670 STRADAQ7RTN6 431 aa12.74□□□□□ -0.37
LIG1-221ENST00000613670 TFAP2DQ7Z6R9 452 aa12.74□□□□□ -0.37
LIG1-221ENST00000613670 TMEM110Q86TL2 294 aa12.74□□□□□ -0.37
LIG1-221ENST00000613670 KBTBD6Q86V97 674 aa12.74□□□□□ -0.37
LIG1-221ENST00000613670 SPPL2CQ8IUH8 684 aa12.74□□□□□ -0.37
LIG1-221ENST00000613670 B3GALNT2Q8NCR0 500 aa12.74□□□□□ -0.37
LIG1-221ENST00000613670 OR52K2Q8NGK3 314 aa12.74□□□□□ -0.37
LIG1-221ENST00000613670 OR9I1Q8NGQ6 314 aa12.74□□□□□ -0.37
LIG1-221ENST00000613670 HASPINQ8TF76 798 aa12.74□□□□□ -0.37
LIG1-221ENST00000613670 CLK4Q9HAZ1 481 aaKnown RBP12.74□□□□□ -0.37
LIG1-221ENST00000613670 OXSMQ9NWU1 459 aa12.74□□□□□ -0.37
LIG1-221ENST00000613670 ANKRD6Q9Y2G4 727 aa12.74□□□□□ -0.37
LIG1-221ENST00000613670 CTSHP09668 335 aa12.73□□□□□ -0.37
LIG1-221ENST00000613670 PRDX6P30041 224 aa12.73□□□□□ -0.37
LIG1-221ENST00000613670 KCNK10P57789 538 aa12.73□□□□□ -0.37
LIG1-221ENST00000613670 TAS2R39P59534 338 aa12.73□□□□□ -0.37
LIG1-221ENST00000613670 VGLL4Q14135 290 aa12.73□□□□□ -0.37
LIG1-221ENST00000613670 RBBP7Q16576 425 aa12.73□□□□□ -0.37
LIG1-221ENST00000613670 ZNF280DQ6N043 979 aa12.73□□□□□ -0.37
LIG1-221ENST00000613670 ZYG11AQ6WRX3 759 aa12.73□□□□□ -0.37
LIG1-221ENST00000613670 TRIM74Q86UV6 250 aa12.73□□□□□ -0.37
LIG1-221ENST00000613670 TRIM73Q86UV7 250 aa12.73□□□□□ -0.37
LIG1-221ENST00000613670 RIOX2Q8IUF8 465 aa12.73□□□□□ -0.37
LIG1-221ENST00000613670 SLC35F5Q8WV83 523 aa12.73□□□□□ -0.37
LIG1-221ENST00000613670 FAR2Q96K12 515 aa12.73□□□□□ -0.37
LIG1-221ENST00000613670 EIF2AQ9BY44 585 aaKnown RBP12.73□□□□□ -0.37
LIG1-221ENST00000613670 NT5MQ9NPB1 228 aa12.73□□□□□ -0.37
LIG1-221ENST00000613670 UTP6Q9NYH9 597 aaKnown RBP12.73□□□□□ -0.37
LIG1-221ENST00000613670 TRHDEQ9UKU6 1024 aa12.73□□□□□ -0.37
LIG1-221ENST00000613670 MATN2O00339 956 aa12.73□□□□□ -0.37
LIG1-221ENST00000613670 NCAM2O15394 837 aa12.73□□□□□ -0.37
LIG1-221ENST00000613670 PSMD3O43242 534 aa12.73□□□□□ -0.37
LIG1-221ENST00000613670 SLC25A27O95847 323 aa12.73□□□□□ -0.37
LIG1-221ENST00000613670 SPATA31D3P0C874 917 aa12.73□□□□□ -0.37
LIG1-221ENST00000613670 HADHAP40939 763 aa12.73□□□□□ -0.37
LIG1-221ENST00000613670 NAA20P61599 178 aa12.73□□□□□ -0.37
LIG1-221ENST00000613670 SPATA31D4Q6ZUB0 917 aa12.73□□□□□ -0.37
LIG1-221ENST00000613670 ZNF410Q86VK4 478 aa12.73□□□□□ -0.37
LIG1-221ENST00000613670 UNC93AQ86WB7 457 aa12.73□□□□□ -0.37
LIG1-221ENST00000613670 AHI1Q8N157 1196 aa12.73□□□□□ -0.37
LIG1-221ENST00000613670 TBL1YQ9BQ87 522 aa12.73□□□□□ -0.37
LIG1-221ENST00000613670 MKS1Q9NXB0 559 aa12.73□□□□□ -0.37
LIG1-221ENST00000613670 BTRCQ9Y297 605 aa12.73□□□□□ -0.37
LIG1-221ENST00000613670 IRF6O14896 467 aa12.73□□□□□ -0.37
LIG1-221ENST00000613670 NRP2O60462 931 aa12.73□□□□□ -0.37
LIG1-221ENST00000613670 SNX2O60749 519 aa12.73□□□□□ -0.37
LIG1-221ENST00000613670 ATP6V1G1O75348 118 aa12.73□□□□□ -0.37
LIG1-221ENST00000613670 MYL3P08590 195 aa12.73□□□□□ -0.37
LIG1-221ENST00000613670 CPB1P15086 417 aa12.73□□□□□ -0.37
LIG1-221ENST00000613670 NPR3P17342 541 aa12.73□□□□□ -0.37
LIG1-221ENST00000613670 C21orf59P57076 290 aa12.73□□□□□ -0.37
LIG1-221ENST00000613670 ZNF618Q5T7W0 954 aa12.73□□□□□ -0.37
LIG1-221ENST00000613670 MAVSQ7Z434 540 aa12.73□□□□□ -0.37
LIG1-221ENST00000613670 DHRSXQ8N5I4 330 aa12.73□□□□□ -0.37
LIG1-221ENST00000613670 MAML3Q96JK9 1138 aa12.73□□□□□ -0.37
LIG1-221ENST00000613670 RNF145Q96MT1 663 aa12.73□□□□□ -0.37
LIG1-221ENST00000613670 NDUFAF1Q9Y375 327 aa12.73□□□□□ -0.37
LIG1-221ENST00000613670 ANGPTL3Q9Y5C1 460 aa12.73□□□□□ -0.37
LIG1-221ENST00000613670 MAGEB3O15480 346 aa12.72□□□□□ -0.37
LIG1-221ENST00000613670 DLX3O60479 287 aa12.72□□□□□ -0.37
LIG1-221ENST00000613670 CLIC3O95833 236 aa12.72□□□□□ -0.37
LIG1-221ENST00000613670 IQCF3P0C7M6 154 aa12.72□□□□□ -0.37
LIG1-221ENST00000613670 PTPN1P18031 435 aaKnown RBP12.72□□□□□ -0.37
LIG1-221ENST00000613670 RPS12P25398 132 aaKnown RBP12.72□□□□□ -0.37
LIG1-221ENST00000613670 GRIA2P42262 883 aa12.72□□□□□ -0.37
LIG1-221ENST00000613670 GEMP55040 296 aa12.72□□□□□ -0.37
LIG1-221ENST00000613670 HPCAP84074 193 aa12.72□□□□□ -0.37
LIG1-221ENST00000613670 CDK18Q07002 472 aa12.72□□□□□ -0.37
LIG1-221ENST00000613670 PCID2Q5JVF3 399 aa12.72□□□□□ -0.37
LIG1-221ENST00000613670 LBX2Q6XYB7 198 aa12.72□□□□□ -0.37
LIG1-221ENST00000613670 SH2D5Q6ZV89 423 aa12.72□□□□□ -0.37
LIG1-221ENST00000613670 CUZD1Q86UP6 607 aa12.72□□□□□ -0.37
LIG1-221ENST00000613670 CAMK1DQ8IU85 385 aa12.72□□□□□ -0.37
LIG1-221ENST00000613670 SHCBP1Q8NEM2 672 aa12.72□□□□□ -0.37
LIG1-221ENST00000613670 TEPSINQ96N21 525 aa12.72□□□□□ -0.37
LIG1-221ENST00000613670 MTG1Q9BT17 334 aaPredicted RBP12.72□□□□□ -0.37
LIG1-221ENST00000613670 SPON2Q9BUD6 331 aa12.72□□□□□ -0.37
LIG1-221ENST00000613670 UBAP1Q9NZ09 502 aa12.72□□□□□ -0.37
LIG1-221ENST00000613670 CACNG4Q9UBN1 327 aa12.72□□□□□ -0.37
LIG1-221ENST00000613670 LAMB2P55268 1798 aa12.72□□□□□ -0.37
LIG1-221ENST00000613670 H6PDO95479 791 aa12.72□□□□□ -0.37
LIG1-221ENST00000613670 RBP1P09455 135 aa12.72□□□□□ -0.37
LIG1-221ENST00000613670 MAXP61244 160 aa12.72□□□□□ -0.37
LIG1-221ENST00000613670 BFSP2Q13515 415 aa12.72□□□□□ -0.37
LIG1-221ENST00000613670 UGT2A3Q6UWM9 527 aa12.72□□□□□ -0.37
LIG1-221ENST00000613670 ZNF534Q76KX8 674 aa12.72□□□□□ -0.37
LIG1-221ENST00000613670 ERO1BQ86YB8 467 aa12.72□□□□□ -0.37
LIG1-221ENST00000613670 PNPLA1Q8N8W4 532 aa12.72□□□□□ -0.37
LIG1-221ENST00000613670 CALML6Q8TD86 181 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms