RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 NBASA2RRP1 2371 aa4.75□□□□□ -1.65
LINC00540-201ENST00000611481 SMIM35A0A1B0GVV1 85 aa4.75□□□□□ -1.65
LINC00540-201ENST00000611481 E9PAM4 449 aa4.75□□□□□ -1.65
LINC00540-201ENST00000611481 GOLIM4O00461 696 aa4.75□□□□□ -1.65
LINC00540-201ENST00000611481 ORC4O43929 436 aa4.75□□□□□ -1.65
LINC00540-201ENST00000611481 PEX1O43933 1283 aa4.75□□□□□ -1.65
LINC00540-201ENST00000611481 NMT2O60551 498 aa4.75□□□□□ -1.65
LINC00540-201ENST00000611481 APBB3O95704 486 aa4.75□□□□□ -1.65
LINC00540-201ENST00000611481 POMCP01189 267 aa4.75□□□□□ -1.65
LINC00540-201ENST00000611481 LPLP06858 475 aa4.75□□□□□ -1.65
LINC00540-201ENST00000611481 ATXN1LP0C7T5 689 aaKnown RBP4.75□□□□□ -1.65
LINC00540-201ENST00000611481 CEBPBP17676 345 aa4.75□□□□□ -1.65
LINC00540-201ENST00000611481 LPOP22079 712 aaPredicted RBP4.75□□□□□ -1.65
LINC00540-201ENST00000611481 VAV2P52735 878 aa4.75□□□□□ -1.65
LINC00540-201ENST00000611481 TMPRSS3P57727 454 aa4.75□□□□□ -1.65
LINC00540-201ENST00000611481 TLE1Q04724 770 aa4.75□□□□□ -1.65
LINC00540-201ENST00000611481 SP140Q13342 867 aa4.75□□□□□ -1.65
LINC00540-201ENST00000611481 GRM3Q14832 879 aa4.75□□□□□ -1.65
LINC00540-201ENST00000611481 PGM5Q15124 567 aa4.75□□□□□ -1.65
LINC00540-201ENST00000611481 SLC5A9Q2M3M2 681 aa4.75□□□□□ -1.65
LINC00540-201ENST00000611481 SBK1Q52WX2 424 aa4.75□□□□□ -1.65
LINC00540-201ENST00000611481 NOMO2Q5JPE7 1267 aa4.75□□□□□ -1.65
LINC00540-201ENST00000611481 FAM78AQ5JUQ0 283 aa4.75□□□□□ -1.65
LINC00540-201ENST00000611481 EPM2AIP1Q7L775 607 aaPredicted RBP4.75□□□□□ -1.65
LINC00540-201ENST00000611481 GLRX5Q86SX6 157 aa4.75□□□□□ -1.65
LINC00540-201ENST00000611481 SETD7Q8WTS6 366 aaKnown RBP4.75□□□□□ -1.65
LINC00540-201ENST00000611481 B3GALT6Q96L58 329 aa4.75□□□□□ -1.65
LINC00540-201ENST00000611481 AIFM3Q96NN9 605 aa4.75□□□□□ -1.65
LINC00540-201ENST00000611481 TIMP4Q99727 224 aa4.75□□□□□ -1.65
LINC00540-201ENST00000611481 PI4K2AQ9BTU6 479 aa4.75□□□□□ -1.65
LINC00540-201ENST00000611481 C8orf33Q9H7E9 229 aaPredicted RBP4.75□□□□□ -1.65
LINC00540-201ENST00000611481 BCO1Q9HAY6 547 aa4.75□□□□□ -1.65
LINC00540-201ENST00000611481 FAM30AQ9NZY2 134 aa4.75□□□□□ -1.65
LINC00540-201ENST00000611481 DNMT3BQ9UBC3 853 aaKnown RBP4.75□□□□□ -1.65
LINC00540-201ENST00000611481 FBXW11Q9UKB1 542 aa4.75□□□□□ -1.65
LINC00540-201ENST00000611481 PHTF1Q9UMS5 762 aa4.75□□□□□ -1.65
LINC00540-201ENST00000611481 IPPQ9Y573 584 aa4.75□□□□□ -1.65
LINC00540-201ENST00000611481 LRBAP50851 2863 aa4.75□□□□□ -1.65
LINC00540-201ENST00000611481 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa4.74□□□□□ -1.65
LINC00540-201ENST00000611481 PNMA6EA0A0J9YXQ4 647 aa4.74□□□□□ -1.65
LINC00540-201ENST00000611481 A0A0U1RQF3 1178 aa4.74□□□□□ -1.65
LINC00540-201ENST00000611481 MYBPHLA2RUH7 354 aa4.74□□□□□ -1.65
LINC00540-201ENST00000611481 AKR1B10O60218 316 aa4.74□□□□□ -1.65
LINC00540-201ENST00000611481 PIP5K1CO60331 668 aa4.74□□□□□ -1.65
LINC00540-201ENST00000611481 DIAPH2O60879 1101 aa4.74□□□□□ -1.65
LINC00540-201ENST00000611481 CBFA2T3O75081 653 aa4.74□□□□□ -1.65
LINC00540-201ENST00000611481 PRKD3O94806 890 aa4.74□□□□□ -1.65
LINC00540-201ENST00000611481 ALDH2P05091 517 aa4.74□□□□□ -1.65
LINC00540-201ENST00000611481 MYBL2P10244 700 aa4.74□□□□□ -1.65
LINC00540-201ENST00000611481 GPD1P21695 349 aa4.74□□□□□ -1.65
LINC00540-201ENST00000611481 CCND2P30279 289 aa4.74□□□□□ -1.65
LINC00540-201ENST00000611481 ADSLP30566 484 aaPredicted RBP4.74□□□□□ -1.65
LINC00540-201ENST00000611481 VIPR2P41587 438 aa4.74□□□□□ -1.65
LINC00540-201ENST00000611481 PTGER3P43115 390 aa4.74□□□□□ -1.65
LINC00540-201ENST00000611481 CRYBB1P53674 252 aaPredicted RBP4.74□□□□□ -1.65
LINC00540-201ENST00000611481 IL2P60568 153 aa4.74□□□□□ -1.65
LINC00540-201ENST00000611481 POU5F1Q01860 360 aaKnown RBP4.74□□□□□ -1.65
LINC00540-201ENST00000611481 SLC14A1Q13336 389 aa4.74□□□□□ -1.65
LINC00540-201ENST00000611481 MTX1Q13505 466 aa4.74□□□□□ -1.65
LINC00540-201ENST00000611481 INAVAQ3KP66 663 aa4.74□□□□□ -1.65
LINC00540-201ENST00000611481 BROXQ5VW32 411 aa4.74□□□□□ -1.65
LINC00540-201ENST00000611481 MTHFD1LQ6UB35 978 aa4.74□□□□□ -1.65
LINC00540-201ENST00000611481 MMS22LQ6ZRQ5 1243 aa4.74□□□□□ -1.65
LINC00540-201ENST00000611481 RALGPS2Q86X27 583 aaPredicted RBP4.74□□□□□ -1.65
LINC00540-201ENST00000611481 YAF2Q8IY57 180 aa4.74□□□□□ -1.65
LINC00540-201ENST00000611481 FAM186BQ8IYM0 893 aa4.74□□□□□ -1.65
LINC00540-201ENST00000611481 CBARPQ8N350 705 aaPredicted RBP4.74□□□□□ -1.65
LINC00540-201ENST00000611481 C1orf131Q8NDD1 294 aaKnown RBP4.74□□□□□ -1.65
LINC00540-201ENST00000611481 VPS37AQ8NEZ2 397 aa4.74□□□□□ -1.65
LINC00540-201ENST00000611481 DEPDC1BQ8WUY9 529 aa4.74□□□□□ -1.65
LINC00540-201ENST00000611481 FGF11Q92914 225 aa4.74□□□□□ -1.65
LINC00540-201ENST00000611481 EAF2Q96CJ1 260 aaPredicted RBP4.74□□□□□ -1.65
LINC00540-201ENST00000611481 GAD1Q99259 594 aa4.74□□□□□ -1.65
LINC00540-201ENST00000611481 LGMNQ99538 433 aa4.74□□□□□ -1.65
LINC00540-201ENST00000611481 SMARCAD1Q9H4L7 1026 aa4.74□□□□□ -1.65
LINC00540-201ENST00000611481 MOCS1Q9NZB8 636 aa4.74□□□□□ -1.65
LINC00540-201ENST00000611481 PRG3Q9Y2Y8 225 aaPredicted RBP4.74□□□□□ -1.65
LINC00540-201ENST00000611481 ENTPD2Q9Y5L3 495 aa4.74□□□□□ -1.65
LINC00540-201ENST00000611481 CABIN1Q9Y6J0 2220 aa4.73□□□□□ -1.65
LINC00540-201ENST00000611481 CSMD1Q96PZ7 3565 aa4.73□□□□□ -1.65
LINC00540-201ENST00000611481 CENPEQ02224 2701 aa4.73□□□□□ -1.65
LINC00540-201ENST00000611481 GSTTP1A0A1W2PQM5 241 aa4.73□□□□□ -1.65
LINC00540-201ENST00000611481 CCDC78A2IDD5 438 aa4.73□□□□□ -1.65
LINC00540-201ENST00000611481 CCDC151A5D8V7 595 aa4.73□□□□□ -1.65
LINC00540-201ENST00000611481 WIPF3A6NGB9 483 aa4.73□□□□□ -1.65
LINC00540-201ENST00000611481 ATP9AO75110 1047 aa4.73□□□□□ -1.65
LINC00540-201ENST00000611481 ERN1O75460 977 aaKnown RBP4.73□□□□□ -1.65
LINC00540-201ENST00000611481 DDHD2O94830 711 aa4.73□□□□□ -1.65
LINC00540-201ENST00000611481 FKBP9O95302 570 aa4.73□□□□□ -1.65
LINC00540-201ENST00000611481 RHOP08100 348 aa4.73□□□□□ -1.65
LINC00540-201ENST00000611481 SERPINF2P08697 491 aa4.73□□□□□ -1.65
LINC00540-201ENST00000611481 SETSIPP0DME0 302 aa4.73□□□□□ -1.65
LINC00540-201ENST00000611481 RAP2AP10114 183 aa4.73□□□□□ -1.65
LINC00540-201ENST00000611481 ATP5JP18859 108 aa4.73□□□□□ -1.65
LINC00540-201ENST00000611481 WT1P19544 449 aaPredicted RBP4.73□□□□□ -1.65
LINC00540-201ENST00000611481 ECHS1P30084 290 aa4.73□□□□□ -1.65
LINC00540-201ENST00000611481 HOXA13P31271 388 aaPredicted RBP4.73□□□□□ -1.65
LINC00540-201ENST00000611481 ADD2P35612 726 aa4.73□□□□□ -1.65
LINC00540-201ENST00000611481 DDIT3P35638 169 aa4.73□□□□□ -1.65
LINC00540-201ENST00000611481 FOLR3P41439 243 aa4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms