RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 EBF3Q9H4W6 596 aa9.64□□□□□ -0.87
TRIM28-208ENST00000597172 USP29Q9HBJ7 922 aa9.64□□□□□ -0.87
TRIM28-208ENST00000597172 THG1LQ9NWX6 298 aaKnown RBP9.64□□□□□ -0.87
TRIM28-208ENST00000597172 KCNK4Q9NYG8 393 aa9.64□□□□□ -0.87
TRIM28-208ENST00000597172 MARK1Q9P0L2 795 aa9.64□□□□□ -0.87
TRIM28-208ENST00000597172 FBXO10Q9UK96 956 aa9.64□□□□□ -0.87
TRIM28-208ENST00000597172 DRG1Q9Y295 367 aaKnown RBP9.64□□□□□ -0.87
TRIM28-208ENST00000597172 RAD54BQ9Y620 910 aa9.64□□□□□ -0.87
TRIM28-208ENST00000597172 NBASA2RRP1 2371 aa9.63□□□□□ -0.87
TRIM28-208ENST00000597172 A0A0D9SEW6 157 aa9.63□□□□□ -0.87
TRIM28-208ENST00000597172 ILVBLA1L0T0 632 aa9.63□□□□□ -0.87
TRIM28-208ENST00000597172 CTAGE15A4D2H0 777 aa9.63□□□□□ -0.87
TRIM28-208ENST00000597172 TRABD2BA6NFA1 517 aa9.63□□□□□ -0.87
TRIM28-208ENST00000597172 RASA4BC9J798 803 aa9.63□□□□□ -0.87
TRIM28-208ENST00000597172 CCDC188H7C350 402 aa9.63□□□□□ -0.87
TRIM28-208ENST00000597172 CHADO15335 359 aa9.63□□□□□ -0.87
TRIM28-208ENST00000597172 RASA4O43374 803 aa9.63□□□□□ -0.87
TRIM28-208ENST00000597172 PHF2O75151 1096 aa9.63□□□□□ -0.87
TRIM28-208ENST00000597172 CISD3P0C7P0 127 aa9.63□□□□□ -0.87
TRIM28-208ENST00000597172 CTAGE8P0CG41 777 aa9.63□□□□□ -0.87
TRIM28-208ENST00000597172 RBP3P10745 1247 aa9.63□□□□□ -0.87
TRIM28-208ENST00000597172 TYRP14679 529 aa9.63□□□□□ -0.87
TRIM28-208ENST00000597172 MZF1P28698 734 aaPredicted RBP9.63□□□□□ -0.87
TRIM28-208ENST00000597172 ACVRL1P37023 503 aa9.63□□□□□ -0.87
TRIM28-208ENST00000597172 PTGIRP43119 386 aa9.63□□□□□ -0.87
TRIM28-208ENST00000597172 IFNAR2P48551 515 aa9.63□□□□□ -0.87
TRIM28-208ENST00000597172 DHPSP49366 369 aaPredicted RBP9.63□□□□□ -0.87
TRIM28-208ENST00000597172 PAPOLAP51003 745 aaKnown RBP9.63□□□□□ -0.87
TRIM28-208ENST00000597172 NDST2P52849 883 aa9.63□□□□□ -0.87
TRIM28-208ENST00000597172 ATXN3P54252 364 aaPredicted RBP9.63□□□□□ -0.87
TRIM28-208ENST00000597172 YBEYP58557 167 aaPredicted RBP9.63□□□□□ -0.87
TRIM28-208ENST00000597172 XRCC4Q13426 336 aa9.63□□□□□ -0.87
TRIM28-208ENST00000597172 BYSLQ13895 437 aaKnown RBP9.63□□□□□ -0.87
TRIM28-208ENST00000597172 PDGFRLQ15198 375 aa9.63□□□□□ -0.87
TRIM28-208ENST00000597172 ANO4Q32M45 955 aa9.63□□□□□ -0.87
TRIM28-208ENST00000597172 PCSK4Q6UW60 755 aa9.63□□□□□ -0.87
TRIM28-208ENST00000597172 SETD3Q86TU7 594 aaPredicted RBP9.63□□□□□ -0.87
TRIM28-208ENST00000597172 CTAGE6Q86UF2 777 aa9.63□□□□□ -0.87
TRIM28-208ENST00000597172 C11orf74Q86VG3 221 aa9.63□□□□□ -0.87
TRIM28-208ENST00000597172 ZC3H18Q86VM9 953 aaKnown RBP9.63□□□□□ -0.87
TRIM28-208ENST00000597172 CTAGE4Q8IX94 777 aa9.63□□□□□ -0.87
TRIM28-208ENST00000597172 KLHL7Q8IXQ5 586 aa9.63□□□□□ -0.87
TRIM28-208ENST00000597172 YAF2Q8IY57 180 aa9.63□□□□□ -0.87
TRIM28-208ENST00000597172 MMGT1Q8N4V1 131 aa9.63□□□□□ -0.87
TRIM28-208ENST00000597172 MNS1Q8NEH6 495 aa9.63□□□□□ -0.87
TRIM28-208ENST00000597172 OR7D4Q8NG98 312 aa9.63□□□□□ -0.87
TRIM28-208ENST00000597172 ATL2Q8NHH9 583 aa9.63□□□□□ -0.87
TRIM28-208ENST00000597172 ARHGEF2Q92974 986 aaKnown RBP9.63□□□□□ -0.87
TRIM28-208ENST00000597172 CHFRQ96EP1 664 aa9.63□□□□□ -0.87
TRIM28-208ENST00000597172 HMCESQ96FZ2 354 aa9.63□□□□□ -0.87
TRIM28-208ENST00000597172 FCRL3Q96P31 734 aaPredicted RBP9.63□□□□□ -0.87
TRIM28-208ENST00000597172 HHIPQ96QV1 700 aa9.63□□□□□ -0.87
TRIM28-208ENST00000597172 KRT12Q99456 494 aa9.63□□□□□ -0.87
TRIM28-208ENST00000597172 LGMNQ99538 433 aa9.63□□□□□ -0.87
TRIM28-208ENST00000597172 BBS2Q9BXC9 721 aa9.63□□□□□ -0.87
TRIM28-208ENST00000597172 FRMD8P1Q9BZ68 369 aaPredicted RBP9.63□□□□□ -0.87
TRIM28-208ENST00000597172 ECT2Q9H8V3 914 aa9.63□□□□□ -0.87
TRIM28-208ENST00000597172 HOMER3Q9NSC5 361 aa9.63□□□□□ -0.87
TRIM28-208ENST00000597172 POLR3BQ9NW08 1133 aaPredicted RBP9.63□□□□□ -0.87
TRIM28-208ENST00000597172 DONSONQ9NYP3 566 aa9.63□□□□□ -0.87
TRIM28-208ENST00000597172 PCYOX1Q9UHG3 505 aa9.63□□□□□ -0.87
TRIM28-208ENST00000597172 MBD1Q9UIS9 605 aaPredicted RBP9.63□□□□□ -0.87
TRIM28-208ENST00000597172 SRPK3Q9UPE1 567 aa9.63□□□□□ -0.87
TRIM28-208ENST00000597172 INVSQ9Y283 1065 aa9.63□□□□□ -0.87
TRIM28-208ENST00000597172 NEU2Q9Y3R4 380 aa9.63□□□□□ -0.87
TRIM28-208ENST00000597172 PCDHB9Q9Y5E1 797 aa9.63□□□□□ -0.87
TRIM28-208ENST00000597172 OR51B4Q9Y5P0 310 aa9.63□□□□□ -0.87
TRIM28-208ENST00000597172 CABIN1Q9Y6J0 2220 aa9.62□□□□□ -0.87
TRIM28-208ENST00000597172 GOLGA6L10A0A0M3HER8 536 aa9.62□□□□□ -0.87
TRIM28-208ENST00000597172 TEX51A0A1B0GUA7 166 aa9.62□□□□□ -0.87
TRIM28-208ENST00000597172 HACD1B0YJ81 288 aa9.62□□□□□ -0.87
TRIM28-208ENST00000597172 B8ZZF3 427 aa9.62□□□□□ -0.87
TRIM28-208ENST00000597172 NEDD8-MDP1E9PL57 170 aa9.62□□□□□ -0.87
TRIM28-208ENST00000597172 H7C0C1 242 aa9.62□□□□□ -0.87
TRIM28-208ENST00000597172 J3KR12 359 aa9.62□□□□□ -0.87
TRIM28-208ENST00000597172 DFFAO00273 331 aa9.62□□□□□ -0.87
TRIM28-208ENST00000597172 TRIM24O15164 1050 aa9.62□□□□□ -0.87
TRIM28-208ENST00000597172 HOXC11O43248 304 aaPredicted RBP9.62□□□□□ -0.87
TRIM28-208ENST00000597172 MAFKO60675 156 aa9.62□□□□□ -0.87
TRIM28-208ENST00000597172 OPHN1O60890 802 aa9.62□□□□□ -0.87
TRIM28-208ENST00000597172 RAMP2O60895 175 aa9.62□□□□□ -0.87
TRIM28-208ENST00000597172 SLU7O95391 586 aaKnown RBP9.62□□□□□ -0.87
TRIM28-208ENST00000597172 NFATC1O95644 943 aa9.62□□□□□ -0.87
TRIM28-208ENST00000597172 CYBBP04839 570 aa9.62□□□□□ -0.87
TRIM28-208ENST00000597172 ITGAVP06756 1048 aa9.62□□□□□ -0.87
TRIM28-208ENST00000597172 VAV1P15498 845 aa9.62□□□□□ -0.87
TRIM28-208ENST00000597172 RBL1P28749 1068 aa9.62□□□□□ -0.87
TRIM28-208ENST00000597172 HLA-FP30511 346 aa9.62□□□□□ -0.87
TRIM28-208ENST00000597172 CHRNA3P32297 505 aa9.62□□□□□ -0.87
TRIM28-208ENST00000597172 CD70P32970 193 aa9.62□□□□□ -0.87
TRIM28-208ENST00000597172 SERPINB6P35237 376 aa9.62□□□□□ -0.87
TRIM28-208ENST00000597172 GARSP41250 739 aaKnown RBP9.62□□□□□ -0.87
TRIM28-208ENST00000597172 ATP5OP48047 213 aa9.62□□□□□ -0.87
TRIM28-208ENST00000597172 SLC6A11P48066 632 aa9.62□□□□□ -0.87
TRIM28-208ENST00000597172 CSRP3P50461 194 aa9.62□□□□□ -0.87
TRIM28-208ENST00000597172 GDF10P55107 478 aa9.62□□□□□ -0.87
TRIM28-208ENST00000597172 MRPS25P82663 173 aaKnown RBP9.62□□□□□ -0.87
TRIM28-208ENST00000597172 GNA12Q03113 381 aa9.62□□□□□ -0.87
TRIM28-208ENST00000597172 GAD2Q05329 585 aa9.62□□□□□ -0.87
TRIM28-208ENST00000597172 PPIDQ08752 370 aaKnown RBP9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms