RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 WDHD1O75717 1129 aaPredicted RBP4.4□□□□□ -1.71
SMCHD1-208ENST00000583344 GLUD1P00367 558 aa4.4□□□□□ -1.71
SMCHD1-208ENST00000583344 PLGP00747 810 aaPredicted RBP4.4□□□□□ -1.71
SMCHD1-208ENST00000583344 NBPF7P0C2Y1 421 aaPredicted RBP4.4□□□□□ -1.71
SMCHD1-208ENST00000583344 FCGR1AP12314 374 aa4.4□□□□□ -1.71
SMCHD1-208ENST00000583344 TRIM27P14373 513 aa4.4□□□□□ -1.71
SMCHD1-208ENST00000583344 HSPA7P48741 367 aa4.4□□□□□ -1.71
SMCHD1-208ENST00000583344 GLUD2P49448 558 aa4.4□□□□□ -1.71
SMCHD1-208ENST00000583344 HNF4GQ14541 408 aa4.4□□□□□ -1.71
SMCHD1-208ENST00000583344 BMP2KLQ5H9B9 411 aa4.4□□□□□ -1.71
SMCHD1-208ENST00000583344 FSCBQ5H9T9 825 aa4.4□□□□□ -1.71
SMCHD1-208ENST00000583344 CREB3L2Q70SY1 520 aa4.4□□□□□ -1.71
SMCHD1-208ENST00000583344 IGFN1Q86VF2 1251 aa4.4□□□□□ -1.71
SMCHD1-208ENST00000583344 HSCBQ8IWL3 235 aa4.4□□□□□ -1.71
SMCHD1-208ENST00000583344 DPP10Q8N608 796 aa4.4□□□□□ -1.71
SMCHD1-208ENST00000583344 FAM110DQ8TAY7 271 aaPredicted RBP4.4□□□□□ -1.71
SMCHD1-208ENST00000583344 TMEM120AQ9BXJ8 343 aa4.4□□□□□ -1.71
SMCHD1-208ENST00000583344 CHST12Q9NRB3 414 aa4.4□□□□□ -1.71
SMCHD1-208ENST00000583344 ATP7AQ04656 1500 aa4.4□□□□□ -1.71
SMCHD1-208ENST00000583344 EVC2Q86UK5 1308 aa4.4□□□□□ -1.71
SMCHD1-208ENST00000583344 KIF24Q5T7B8 1368 aa4.4□□□□□ -1.71
SMCHD1-208ENST00000583344 ABCA9Q8IUA7 1624 aa4.39□□□□□ -1.71
SMCHD1-208ENST00000583344 ZFYVE9O95405 1425 aa4.39□□□□□ -1.71
SMCHD1-208ENST00000583344 PPIP5K1Q6PFW1 1433 aa4.39□□□□□ -1.71
SMCHD1-208ENST00000583344 ZC3H13Q5T200 1668 aaKnown RBP4.39□□□□□ -1.71
SMCHD1-208ENST00000583344 PTPRMP28827 1452 aa4.39□□□□□ -1.71
SMCHD1-208ENST00000583344 RASA4BC9J798 803 aa4.39□□□□□ -1.71
SMCHD1-208ENST00000583344 MS4A18H0YCH9 400 aa4.39□□□□□ -1.71
SMCHD1-208ENST00000583344 RASA4O43374 803 aa4.39□□□□□ -1.71
SMCHD1-208ENST00000583344 LDB3O75112 727 aa4.39□□□□□ -1.71
SMCHD1-208ENST00000583344 NPPBP16860 134 aa4.39□□□□□ -1.71
SMCHD1-208ENST00000583344 HSPA2P54652 639 aa4.39□□□□□ -1.71
SMCHD1-208ENST00000583344 RBM6P78332 1123 aaKnown RBP4.39□□□□□ -1.71
SMCHD1-208ENST00000583344 DSC1Q08554 894 aa4.39□□□□□ -1.71
SMCHD1-208ENST00000583344 LONRF1Q17RB8 773 aa4.39□□□□□ -1.71
SMCHD1-208ENST00000583344 GLIPR1L2Q4G1C9 344 aa4.39□□□□□ -1.71
SMCHD1-208ENST00000583344 SLC30A9Q6PML9 568 aa4.39□□□□□ -1.71
SMCHD1-208ENST00000583344 ANKS1BQ7Z6G8 1248 aa4.39□□□□□ -1.71
SMCHD1-208ENST00000583344 DPP9Q86TI2 863 aa4.39□□□□□ -1.71
SMCHD1-208ENST00000583344 CHD1LQ86WJ1 897 aa4.39□□□□□ -1.71
SMCHD1-208ENST00000583344 FAM185AQ8N0U4 392 aa4.39□□□□□ -1.71
SMCHD1-208ENST00000583344 SVIPQ8NHG7 77 aa4.39□□□□□ -1.71
SMCHD1-208ENST00000583344 WDR60Q8WVS4 1066 aa4.39□□□□□ -1.71
SMCHD1-208ENST00000583344 NAP1L4Q99733 375 aaKnown RBP4.39□□□□□ -1.71
SMCHD1-208ENST00000583344 ACTR5Q9H9F9 607 aaPredicted RBP4.39□□□□□ -1.71
SMCHD1-208ENST00000583344 TM7SF3Q9NS93 570 aa4.39□□□□□ -1.71
SMCHD1-208ENST00000583344 RRP7AQ9Y3A4 280 aaKnown RBP4.39□□□□□ -1.71
SMCHD1-208ENST00000583344 PKP3Q9Y446 797 aa4.39□□□□□ -1.71
SMCHD1-208ENST00000583344 SLC4A4Q9Y6R1 1079 aa4.39□□□□□ -1.71
SMCHD1-208ENST00000583344 ADGRB3O60242 1522 aa4.39□□□□□ -1.71
SMCHD1-208ENST00000583344 EFCAB6Q5THR3 1501 aa4.39□□□□□ -1.71
SMCHD1-208ENST00000583344 PIK3R4Q99570 1358 aa4.39□□□□□ -1.71
SMCHD1-208ENST00000583344 PPLO60437 1756 aa4.38□□□□□ -1.71
SMCHD1-208ENST00000583344 SLC38A8A6NNN8 435 aa4.38□□□□□ -1.71
SMCHD1-208ENST00000583344 HNRNPDLO14979 420 aaKnown RBP4.38□□□□□ -1.71
SMCHD1-208ENST00000583344 NPHP1O15259 732 aa4.38□□□□□ -1.71
SMCHD1-208ENST00000583344 DNPH1O43598 174 aa4.38□□□□□ -1.71
SMCHD1-208ENST00000583344 HSP90AA1P07900 732 aaKnown RBP4.38□□□□□ -1.71
SMCHD1-208ENST00000583344 TPM2P07951 284 aa4.38□□□□□ -1.71
SMCHD1-208ENST00000583344 ZNF12P17014 697 aa4.38□□□□□ -1.71
SMCHD1-208ENST00000583344 PPP3CCP48454 512 aa4.38□□□□□ -1.71
SMCHD1-208ENST00000583344 EEF1A2Q05639 463 aaKnown RBP4.38□□□□□ -1.71
SMCHD1-208ENST00000583344 SF3A3Q12874 501 aaKnown RBP eCLIP4.38□□□□□ -1.71
SMCHD1-208ENST00000583344 PICALMQ13492 652 aa4.38□□□□□ -1.71
SMCHD1-208ENST00000583344 ZNF284Q2VY69 593 aa4.38□□□□□ -1.71
SMCHD1-208ENST00000583344 BTBD16Q32M84 506 aa4.38□□□□□ -1.71
SMCHD1-208ENST00000583344 C10orf62Q5T681 223 aaPredicted RBP4.38□□□□□ -1.71
SMCHD1-208ENST00000583344 SPSB3Q6PJ21 355 aa4.38□□□□□ -1.71
SMCHD1-208ENST00000583344 FJX1Q86VR8 437 aa4.38□□□□□ -1.71
SMCHD1-208ENST00000583344 TMEM200AQ86VY9 491 aa4.38□□□□□ -1.71
SMCHD1-208ENST00000583344 FTSJ3Q8IY81 847 aaKnown RBP4.38□□□□□ -1.71
SMCHD1-208ENST00000583344 CLIP4Q8N3C7 705 aa4.38□□□□□ -1.71
SMCHD1-208ENST00000583344 TMEM57Q8N5G2 664 aa4.38□□□□□ -1.71
SMCHD1-208ENST00000583344 OR2C3Q8N628 320 aa4.38□□□□□ -1.71
SMCHD1-208ENST00000583344 TMED6Q8WW62 240 aa4.38□□□□□ -1.71
SMCHD1-208ENST00000583344 KLHL31Q9H511 634 aa4.38□□□□□ -1.71
SMCHD1-208ENST00000583344 SMC4Q9NTJ3 1288 aa4.38□□□□□ -1.71
SMCHD1-208ENST00000583344 TERF2IPQ9NYB0 399 aa4.38□□□□□ -1.71
SMCHD1-208ENST00000583344 PNMA2Q9UL42 364 aa4.38□□□□□ -1.71
SMCHD1-208ENST00000583344 SLC39A10Q9ULF5 831 aa4.38□□□□□ -1.71
SMCHD1-208ENST00000583344 RAP2CQ9Y3L5 183 aa4.38□□□□□ -1.71
SMCHD1-208ENST00000583344 REREQ9P2R6 1566 aa4.38□□□□□ -1.71
SMCHD1-208ENST00000583344 RIMS1Q86UR5 1692 aaKnown RBP4.38□□□□□ -1.71
SMCHD1-208ENST00000583344 CD109Q6YHK3 1445 aa4.38□□□□□ -1.71
SMCHD1-208ENST00000583344 PLSCR5A0PG75 271 aa4.37□□□□□ -1.71
SMCHD1-208ENST00000583344 AGAP5A6NIR3 686 aa4.37□□□□□ -1.71
SMCHD1-208ENST00000583344 SAC3D1A6NKF1 404 aa4.37□□□□□ -1.71
SMCHD1-208ENST00000583344 SRRM3A6NNA2 597 aaPredicted RBP4.37□□□□□ -1.71
SMCHD1-208ENST00000583344 VWA5AO00534 786 aa4.37□□□□□ -1.71
SMCHD1-208ENST00000583344 LDB2O43679 373 aa4.37□□□□□ -1.71
SMCHD1-208ENST00000583344 ZNF853P0CG23 659 aa4.37□□□□□ -1.71
SMCHD1-208ENST00000583344 AVPR1AP37288 418 aa4.37□□□□□ -1.71
SMCHD1-208ENST00000583344 TM4SF4P48230 202 aa4.37□□□□□ -1.71
SMCHD1-208ENST00000583344 RGS19P49795 217 aa4.37□□□□□ -1.71
SMCHD1-208ENST00000583344 RIPK4P57078 832 aa4.37□□□□□ -1.71
SMCHD1-208ENST00000583344 NUCB2P80303 420 aa4.37□□□□□ -1.71
SMCHD1-208ENST00000583344 CALD1Q05682 793 aaKnown RBP4.37□□□□□ -1.71
SMCHD1-208ENST00000583344 CCDC173Q0VFZ6 552 aa4.37□□□□□ -1.71
SMCHD1-208ENST00000583344 TRAF3Q13114 568 aa4.37□□□□□ -1.71
SMCHD1-208ENST00000583344 KLHL40Q2TBA0 621 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms