RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 FTHL17Q9BXU8 183 aa10.21□□□□□ -0.77
VPS53-220ENST00000576149 NOL6Q9H6R4 1146 aaKnown RBP10.21□□□□□ -0.77
VPS53-220ENST00000576149 NMRK2Q9NPI5 230 aa10.21□□□□□ -0.77
VPS53-220ENST00000576149 RGS18Q9NS28 235 aa10.21□□□□□ -0.77
VPS53-220ENST00000576149 ABI2Q9NYB9 513 aaPredicted RBP10.21□□□□□ -0.77
VPS53-220ENST00000576149 SLC2A6Q9UGQ3 507 aa10.21□□□□□ -0.77
VPS53-220ENST00000576149 IPO11Q9UI26 975 aaKnown RBP10.21□□□□□ -0.77
VPS53-220ENST00000576149 RUVBL2Q9Y230 463 aaKnown RBP10.21□□□□□ -0.77
VPS53-220ENST00000576149 NOD1Q9Y239 953 aa10.21□□□□□ -0.77
VPS53-220ENST00000576149 TLR6Q9Y2C9 796 aa10.21□□□□□ -0.77
VPS53-220ENST00000576149 MRPL42Q9Y6G3 142 aaKnown RBP10.21□□□□□ -0.77
VPS53-220ENST00000576149 DNAH12Q6ZR08 3092 aa10.21□□□□□ -0.78
VPS53-220ENST00000576149 TMEM189-UBE2V1I3L0A0 370 aa10.21□□□□□ -0.78
VPS53-220ENST00000576149 MATN2O00339 956 aa10.21□□□□□ -0.78
VPS53-220ENST00000576149 LIN7AO14910 233 aaPredicted RBP10.21□□□□□ -0.78
VPS53-220ENST00000576149 EOMESO95936 686 aa10.21□□□□□ -0.78
VPS53-220ENST00000576149 CHRNGP07510 517 aa10.21□□□□□ -0.78
VPS53-220ENST00000576149 PRDX6P30041 224 aa10.21□□□□□ -0.78
VPS53-220ENST00000576149 AVPR1AP37288 418 aa10.21□□□□□ -0.78
VPS53-220ENST00000576149 GRIA4P48058 902 aa10.21□□□□□ -0.78
VPS53-220ENST00000576149 RAB10P61026 200 aa10.21□□□□□ -0.78
VPS53-220ENST00000576149 PRKCZQ05513 592 aa10.21□□□□□ -0.78
VPS53-220ENST00000576149 BLMHQ13867 455 aa10.21□□□□□ -0.78
VPS53-220ENST00000576149 CNGA3Q16281 694 aa10.21□□□□□ -0.78
VPS53-220ENST00000576149 FSCBQ5H9T9 825 aa10.21□□□□□ -0.78
VPS53-220ENST00000576149 PIK3R6Q5UE93 754 aa10.21□□□□□ -0.78
VPS53-220ENST00000576149 TRIM68Q6AZZ1 485 aa10.21□□□□□ -0.78
VPS53-220ENST00000576149 MSANTD2Q6P1R3 559 aa10.21□□□□□ -0.78
VPS53-220ENST00000576149 CEP97Q8IW35 865 aa10.21□□□□□ -0.78
VPS53-220ENST00000576149 MFSD6LQ8IWD5 586 aa10.21□□□□□ -0.78
VPS53-220ENST00000576149 NUP93Q8N1F7 819 aa10.21□□□□□ -0.78
VPS53-220ENST00000576149 PHTF2Q8N3S3 785 aa10.21□□□□□ -0.78
VPS53-220ENST00000576149 FSTL5Q8N475 847 aaPredicted RBP10.21□□□□□ -0.78
VPS53-220ENST00000576149 C2CD4AQ8NCU7 369 aaPredicted RBP10.21□□□□□ -0.78
VPS53-220ENST00000576149 KCTD4Q8WVF5 259 aa10.21□□□□□ -0.78
VPS53-220ENST00000576149 SCG3Q8WXD2 468 aaKnown RBP10.21□□□□□ -0.78
VPS53-220ENST00000576149 C8orf48Q96LL4 319 aa10.21□□□□□ -0.78
VPS53-220ENST00000576149 UBE2OQ9C0C9 1292 aaKnown RBP10.21□□□□□ -0.78
VPS53-220ENST00000576149 TRPV6Q9H1D0 765 aa10.21□□□□□ -0.78
VPS53-220ENST00000576149 MAN1C1Q9NR34 630 aa10.21□□□□□ -0.78
VPS53-220ENST00000576149 TBC1D13Q9NVG8 400 aa10.21□□□□□ -0.78
VPS53-220ENST00000576149 ACOT9Q9Y305 439 aa10.21□□□□□ -0.78
VPS53-220ENST00000576149 RAP2CQ9Y3L5 183 aa10.21□□□□□ -0.78
VPS53-220ENST00000576149 FAM95CA0A1B0GW59 222 aa10.2□□□□□ -0.78
VPS53-220ENST00000576149 DCXO43602 365 aa10.2□□□□□ -0.78
VPS53-220ENST00000576149 ZBTB14O43829 449 aa10.2□□□□□ -0.78
VPS53-220ENST00000576149 PEX11BO96011 259 aa10.2□□□□□ -0.78
VPS53-220ENST00000576149 SLC2A3P11169 496 aa10.2□□□□□ -0.78
VPS53-220ENST00000576149 PAMP19021 973 aa10.2□□□□□ -0.78
VPS53-220ENST00000576149 GLDCP23378 1020 aa10.2□□□□□ -0.78
VPS53-220ENST00000576149 SLC1A2P43004 574 aa10.2□□□□□ -0.78
VPS53-220ENST00000576149 GLRBP48167 497 aa10.2□□□□□ -0.78
VPS53-220ENST00000576149 HK2P52789 917 aa10.2□□□□□ -0.78
VPS53-220ENST00000576149 BTKQ06187 659 aa10.2□□□□□ -0.78
VPS53-220ENST00000576149 HNRNPDQ14103 355 aaKnown RBP10.2□□□□□ -0.78
VPS53-220ENST00000576149 CLLU1OSQ5K130 101 aa10.2□□□□□ -0.78
VPS53-220ENST00000576149 SDHAF4Q5VUM1 108 aa10.2□□□□□ -0.78
VPS53-220ENST00000576149 C1orf146Q5VVC0 180 aa10.2□□□□□ -0.78
VPS53-220ENST00000576149 ARMC3Q5W041 872 aa10.2□□□□□ -0.78
VPS53-220ENST00000576149 KIAA0930Q6ICG6 404 aaPredicted RBP10.2□□□□□ -0.78
VPS53-220ENST00000576149 LRRC8EQ6NSJ5 796 aa10.2□□□□□ -0.78
VPS53-220ENST00000576149 KDELC1Q6UW63 502 aa10.2□□□□□ -0.78
VPS53-220ENST00000576149 ZNF683Q8IZ20 524 aa10.2□□□□□ -0.78
VPS53-220ENST00000576149 DCP1BQ8IZD4 617 aaKnown RBP10.2□□□□□ -0.78
VPS53-220ENST00000576149 UMODL1-AS1Q8N2C9 162 aa10.2□□□□□ -0.78
VPS53-220ENST00000576149 PCSK9Q8NBP7 692 aaKnown RBP10.2□□□□□ -0.78
VPS53-220ENST00000576149 FUBP3Q96I24 572 aaKnown RBP eCLIP10.2□□□□□ -0.78
VPS53-220ENST00000576149 SCYL1Q96KG9 808 aa10.2□□□□□ -0.78
VPS53-220ENST00000576149 GPR78Q96P69 363 aa10.2□□□□□ -0.78
VPS53-220ENST00000576149 PRKD2Q9BZL6 878 aa10.2□□□□□ -0.78
VPS53-220ENST00000576149 SLC25A51Q9H1U9 297 aa10.2□□□□□ -0.78
VPS53-220ENST00000576149 ATXN3LQ9H3M9 355 aa10.2□□□□□ -0.78
VPS53-220ENST00000576149 ARNT2Q9HBZ2 717 aa10.2□□□□□ -0.78
VPS53-220ENST00000576149 GPAMQ9HCL2 828 aa10.2□□□□□ -0.78
VPS53-220ENST00000576149 DNAJB4Q9UDY4 337 aa10.2□□□□□ -0.78
VPS53-220ENST00000576149 WASF2Q9Y6W5 498 aa10.2□□□□□ -0.78
VPS53-220ENST00000576149 E9PBE3 544 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 HDAC3O15379 428 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 CCNT2O60583 730 aaKnown RBP10.19□□□□□ -0.78
VPS53-220ENST00000576149 KLHL41O60662 606 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 NEBLO76041 1014 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 ANPEPP15144 967 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 STMN1P16949 149 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 MPSTP25325 297 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 CRABP2P29373 138 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 CDC25CP30307 473 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 CHRNA4P43681 627 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 TM4SF4P48230 202 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 GPR15P49685 360 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 RPL14P50914 215 aaKnown RBP10.19□□□□□ -0.78
VPS53-220ENST00000576149 NDST2P52849 883 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 WNT3AP56704 352 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 ZNF460Q14592 562 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 NFE2Q16621 373 aaPredicted RBP10.19□□□□□ -0.78
VPS53-220ENST00000576149 DDR2Q16832 855 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 ARL13AQ5H913 290 aaPredicted RBP10.19□□□□□ -0.78
VPS53-220ENST00000576149 RALGPS1Q5JS13 557 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 C1QTNF12Q5T7M4 302 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 ANO7Q6IWH7 933 aa10.19□□□□□ -0.78
VPS53-220ENST00000576149 PGM2L1Q6PCE3 622 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms