RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 GRM3Q14832 879 aa17.33■□□□□ 0.36
NUP88-210ENST00000574867 ATXN7L2Q5T6C5 722 aaPredicted RBP17.33■□□□□ 0.36
NUP88-210ENST00000574867 STK40Q8N2I9 435 aa17.33■□□□□ 0.36
NUP88-210ENST00000574867 PGBD5Q8N414 524 aa17.33■□□□□ 0.36
NUP88-210ENST00000574867 RYBPQ8N488 228 aaPredicted RBP17.33■□□□□ 0.36
NUP88-210ENST00000574867 CAMKK1Q8N5S9 505 aa17.33■□□□□ 0.36
NUP88-210ENST00000574867 TEKT5Q96M29 485 aa17.33■□□□□ 0.36
NUP88-210ENST00000574867 NUDCD1Q96RS6 583 aa17.33■□□□□ 0.36
NUP88-210ENST00000574867 HEPHQ9BQS7 1158 aa17.33■□□□□ 0.36
NUP88-210ENST00000574867 TMEM121Q9BTD3 319 aa17.33■□□□□ 0.36
NUP88-210ENST00000574867 TUBB2BQ9BVA1 445 aa17.33■□□□□ 0.36
NUP88-210ENST00000574867 USP29Q9HBJ7 922 aa17.33■□□□□ 0.36
NUP88-210ENST00000574867 PRMT8Q9NR22 394 aaPredicted RBP17.33■□□□□ 0.36
NUP88-210ENST00000574867 KLHL8Q9P2G9 620 aaPredicted RBP17.33■□□□□ 0.36
NUP88-210ENST00000574867 ZNF148Q9UQR1 794 aa17.33■□□□□ 0.36
NUP88-210ENST00000574867 DRG1Q9Y295 367 aaKnown RBP17.33■□□□□ 0.36
NUP88-210ENST00000574867 PHF2O75151 1096 aa17.32■□□□□ 0.36
NUP88-210ENST00000574867 URI1O94763 535 aaPredicted RBP17.32■□□□□ 0.36
NUP88-210ENST00000574867 APBB3O95704 486 aa17.32■□□□□ 0.36
NUP88-210ENST00000574867 POP4O95707 220 aaKnown RBP17.32■□□□□ 0.36
NUP88-210ENST00000574867 PRNPP04156 253 aa17.32■□□□□ 0.36
NUP88-210ENST00000574867 C7P10643 843 aa17.32■□□□□ 0.36
NUP88-210ENST00000574867 CR2P20023 1033 aa17.32■□□□□ 0.36
NUP88-210ENST00000574867 AVPR2P30518 371 aa17.32■□□□□ 0.36
NUP88-210ENST00000574867 COPAP53621 1224 aa17.32■□□□□ 0.36
NUP88-210ENST00000574867 SNX1Q13596 522 aa17.32■□□□□ 0.36
NUP88-210ENST00000574867 ZNF776Q68DI1 518 aaPredicted RBP17.32■□□□□ 0.36
NUP88-210ENST00000574867 DTWD2Q8NBA8 298 aa17.32■□□□□ 0.36
NUP88-210ENST00000574867 RTP4Q96DX8 246 aa17.32■□□□□ 0.36
NUP88-210ENST00000574867 C10orf88Q9H8K7 445 aa17.32■□□□□ 0.36
NUP88-210ENST00000574867 C2orf42Q9NWW7 574 aa17.32■□□□□ 0.36
NUP88-210ENST00000574867 IL36AQ9UHA7 158 aa17.32■□□□□ 0.36
NUP88-210ENST00000574867 CDC23Q9UJX2 597 aa17.32■□□□□ 0.36
NUP88-210ENST00000574867 TTLL3Q9Y4R7 772 aa17.32■□□□□ 0.36
NUP88-210ENST00000574867 C1QTNF3-AMACRE9PGA6 284 aa17.32■□□□□ 0.36
NUP88-210ENST00000574867 LAMTOR5O43504 91 aa17.32■□□□□ 0.36
NUP88-210ENST00000574867 CHRNA3P32297 505 aa17.32■□□□□ 0.36
NUP88-210ENST00000574867 RGRP47804 291 aa17.32■□□□□ 0.36
NUP88-210ENST00000574867 FNTAP49354 379 aa17.32■□□□□ 0.36
NUP88-210ENST00000574867 LMNB2Q03252 620 aa17.32■□□□□ 0.36
NUP88-210ENST00000574867 ZBTB16Q05516 673 aa17.32■□□□□ 0.36
NUP88-210ENST00000574867 MYLK3Q32MK0 819 aa17.32■□□□□ 0.36
NUP88-210ENST00000574867 ITPRIPL1Q6GPH6 555 aa17.32■□□□□ 0.36
NUP88-210ENST00000574867 SRLQ86TD4 932 aa17.32■□□□□ 0.36
NUP88-210ENST00000574867 C1orf210Q8IVY1 113 aa17.32■□□□□ 0.36
NUP88-210ENST00000574867 CNTD1Q8N815 330 aa17.32■□□□□ 0.36
NUP88-210ENST00000574867 TMIEQ8NEW7 156 aa17.32■□□□□ 0.36
NUP88-210ENST00000574867 MAGOHBQ96A72 148 aaKnown RBP17.32■□□□□ 0.36
NUP88-210ENST00000574867 SPATA13Q96N96 652 aa17.32■□□□□ 0.36
NUP88-210ENST00000574867 AGAP3Q96P47 875 aa17.32■□□□□ 0.36
NUP88-210ENST00000574867 TUBGCP5Q96RT8 1024 aa17.32■□□□□ 0.36
NUP88-210ENST00000574867 OSBPL1AQ9BXW6 950 aa17.32■□□□□ 0.36
NUP88-210ENST00000574867 CEP41Q9BYV8 373 aa17.32■□□□□ 0.36
NUP88-210ENST00000574867 CPEB1Q9BZB8 566 aaKnown RBP17.32■□□□□ 0.36
NUP88-210ENST00000574867 ZDHHC6Q9H6R6 413 aa17.32■□□□□ 0.36
NUP88-210ENST00000574867 POLR3BQ9NW08 1133 aaPredicted RBP17.32■□□□□ 0.36
NUP88-210ENST00000574867 C5orf60A6NFR6 353 aa17.31■□□□□ 0.36
NUP88-210ENST00000574867 CCDC188H7C350 402 aa17.31■□□□□ 0.36
NUP88-210ENST00000574867 OPHN1O60890 802 aa17.31■□□□□ 0.36
NUP88-210ENST00000574867 ADH1BP00325 375 aa17.31■□□□□ 0.36
NUP88-210ENST00000574867 SCNN1BP51168 640 aa17.31■□□□□ 0.36
NUP88-210ENST00000574867 NUBP1P53384 320 aa17.31■□□□□ 0.36
NUP88-210ENST00000574867 MAXP61244 160 aa17.31■□□□□ 0.36
NUP88-210ENST00000574867 CKAP4Q07065 602 aaKnown RBP17.31■□□□□ 0.36
NUP88-210ENST00000574867 ITKQ08881 620 aa17.31■□□□□ 0.36
NUP88-210ENST00000574867 FAM46CQ5VWP2 391 aa17.31■□□□□ 0.36
NUP88-210ENST00000574867 ZNF567Q8N184 647 aa17.31■□□□□ 0.36
NUP88-210ENST00000574867 FAM71DQ8N9W8 422 aa17.31■□□□□ 0.36
NUP88-210ENST00000574867 CHST14Q8NCH0 376 aa17.31■□□□□ 0.36
NUP88-210ENST00000574867 OR6K2Q8NGY2 324 aa17.31■□□□□ 0.36
NUP88-210ENST00000574867 HHIPQ96QV1 700 aa17.31■□□□□ 0.36
NUP88-210ENST00000574867 FAM129BQ96TA1 746 aa17.31■□□□□ 0.36
NUP88-210ENST00000574867 MKRN2Q9H000 416 aaKnown RBP17.31■□□□□ 0.36
NUP88-210ENST00000574867 SCUBE2Q9NQ36 999 aa17.31■□□□□ 0.36
NUP88-210ENST00000574867 EVLQ9UI08 416 aaPredicted RBP17.31■□□□□ 0.36
NUP88-210ENST00000574867 PPM1HQ9ULR3 514 aa17.31■□□□□ 0.36
NUP88-210ENST00000574867 SCML1Q9UN30 329 aa17.31■□□□□ 0.36
NUP88-210ENST00000574867 WASF2Q9Y6W5 498 aa17.31■□□□□ 0.36
NUP88-210ENST00000574867 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP17.3■□□□□ 0.36
NUP88-210ENST00000574867 INSIG1O15503 277 aa17.3■□□□□ 0.36
NUP88-210ENST00000574867 GABRG2P18507 467 aa17.3■□□□□ 0.36
NUP88-210ENST00000574867 NDUFV2P19404 249 aa17.3■□□□□ 0.36
NUP88-210ENST00000574867 HOXA6P31267 233 aa17.3■□□□□ 0.36
NUP88-210ENST00000574867 WHAMMP3Q1A5X7 153 aa17.3■□□□□ 0.36
NUP88-210ENST00000574867 P3H1Q32P28 736 aa17.3■□□□□ 0.36
NUP88-210ENST00000574867 RASSF3Q86WH2 238 aa17.3■□□□□ 0.36
NUP88-210ENST00000574867 TMPRSS6Q8IU80 811 aa17.3■□□□□ 0.36
NUP88-210ENST00000574867 GRIN3AQ8TCU5 1115 aa17.3■□□□□ 0.36
NUP88-210ENST00000574867 HMGB4Q8WW32 186 aa17.3■□□□□ 0.36
NUP88-210ENST00000574867 PRCCQ92733 491 aaPredicted RBP17.3■□□□□ 0.36
NUP88-210ENST00000574867 MRGPRX1Q96LB2 322 aa17.3■□□□□ 0.36
NUP88-210ENST00000574867 SEMA3CQ99985 751 aa17.3■□□□□ 0.36
NUP88-210ENST00000574867 ATP13A3Q9H7F0 1226 aa17.3■□□□□ 0.36
NUP88-210ENST00000574867 BCCIPQ9P287 314 aaKnown RBP eCLIP17.3■□□□□ 0.36
NUP88-210ENST00000574867 PDE2AO00408 941 aaPredicted RBP17.3■□□□□ 0.36
NUP88-210ENST00000574867 IL1BP01584 269 aa17.3■□□□□ 0.36
NUP88-210ENST00000574867 CST6Q15828 149 aa17.3■□□□□ 0.36
NUP88-210ENST00000574867 SLC14A2Q15849 920 aa17.3■□□□□ 0.36
NUP88-210ENST00000574867 ANKRD20A2Q5SQ80 823 aa17.3■□□□□ 0.36
NUP88-210ENST00000574867 ANKRD20A1Q5TYW2 823 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms