RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 SAR1BQ9Y6B6 198 aa9.43□□□□□ -0.9
VPS35-211ENST00000569950 ZNF292O60281 2723 aa9.43□□□□□ -0.9
VPS35-211ENST00000569950 PLXNA2O75051 1894 aa9.42□□□□□ -0.9
VPS35-211ENST00000569950 OTOGLQ3ZCN5 2332 aa9.42□□□□□ -0.9
VPS35-211ENST00000569950 TRAFD1O14545 582 aaPredicted RBP9.42□□□□□ -0.9
VPS35-211ENST00000569950 PPP1R12AO14974 1030 aaPredicted RBP9.42□□□□□ -0.9
VPS35-211ENST00000569950 ZBTB24O43167 697 aaPredicted RBP9.42□□□□□ -0.9
VPS35-211ENST00000569950 PRLP01236 227 aa9.42□□□□□ -0.9
VPS35-211ENST00000569950 ETS1P14921 441 aa9.42□□□□□ -0.9
VPS35-211ENST00000569950 MSNP26038 577 aaKnown RBP9.42□□□□□ -0.9
VPS35-211ENST00000569950 HOXA6P31267 233 aa9.42□□□□□ -0.9
VPS35-211ENST00000569950 CASQ1P31415 396 aa9.42□□□□□ -0.9
VPS35-211ENST00000569950 PTGIRP43119 386 aa9.42□□□□□ -0.9
VPS35-211ENST00000569950 MMP13P45452 471 aa9.42□□□□□ -0.9
VPS35-211ENST00000569950 KCNJ1P48048 391 aa9.42□□□□□ -0.9
VPS35-211ENST00000569950 GEMIN4P57678 1058 aaKnown RBP9.42□□□□□ -0.9
VPS35-211ENST00000569950 DSC2Q02487 901 aa9.42□□□□□ -0.9
VPS35-211ENST00000569950 NSUN2Q08J23 767 aaKnown RBP eCLIP9.42□□□□□ -0.9
VPS35-211ENST00000569950 AP1B1Q10567 949 aa9.42□□□□□ -0.9
VPS35-211ENST00000569950 SNX1Q13596 522 aa9.42□□□□□ -0.9
VPS35-211ENST00000569950 LONRF2Q1L5Z9 754 aa9.42□□□□□ -0.9
VPS35-211ENST00000569950 MYLK3Q32MK0 819 aa9.42□□□□□ -0.9
VPS35-211ENST00000569950 TEX44Q53QW1 395 aa9.42□□□□□ -0.9
VPS35-211ENST00000569950 ODF2Q5BJF6 829 aa9.42□□□□□ -0.9
VPS35-211ENST00000569950 CARD16Q5EG05 197 aa9.42□□□□□ -0.9
VPS35-211ENST00000569950 EOGTQ5NDL2 527 aa9.42□□□□□ -0.9
VPS35-211ENST00000569950 NCEH1Q6PIU2 408 aa9.42□□□□□ -0.9
VPS35-211ENST00000569950 TSSK4Q6SA08 328 aa9.42□□□□□ -0.9
VPS35-211ENST00000569950 NUDT18Q6ZVK8 323 aa9.42□□□□□ -0.9
VPS35-211ENST00000569950 AADATQ8N5Z0 425 aa9.42□□□□□ -0.9
VPS35-211ENST00000569950 TTC13Q8NBP0 860 aa9.42□□□□□ -0.9
VPS35-211ENST00000569950 CCNYQ8ND76 341 aa9.42□□□□□ -0.9
VPS35-211ENST00000569950 OR2T3Q8NH03 318 aa9.42□□□□□ -0.9
VPS35-211ENST00000569950 SPOCK2Q92563 424 aa9.42□□□□□ -0.9
VPS35-211ENST00000569950 ARRDC3Q96B67 414 aa9.42□□□□□ -0.9
VPS35-211ENST00000569950 ECHDC3Q96DC8 303 aa9.42□□□□□ -0.9
VPS35-211ENST00000569950 OXNAD1Q96HP4 312 aaPredicted RBP9.42□□□□□ -0.9
VPS35-211ENST00000569950 CAPZA3Q96KX2 299 aa9.42□□□□□ -0.9
VPS35-211ENST00000569950 HHIPQ96QV1 700 aa9.42□□□□□ -0.9
VPS35-211ENST00000569950 TRIB3Q96RU7 358 aa9.42□□□□□ -0.9
VPS35-211ENST00000569950 TMEM121Q9BTD3 319 aa9.42□□□□□ -0.9
VPS35-211ENST00000569950 NOD2Q9HC29 1040 aa9.42□□□□□ -0.9
VPS35-211ENST00000569950 RBM22Q9NW64 420 aaKnown RBP eCLIP9.42□□□□□ -0.9
VPS35-211ENST00000569950 SEPT3Q9UH03 358 aa9.42□□□□□ -0.9
VPS35-211ENST00000569950 EVLQ9UI08 416 aaPredicted RBP9.42□□□□□ -0.9
VPS35-211ENST00000569950 HPCAL4Q9UM19 191 aa9.42□□□□□ -0.9
VPS35-211ENST00000569950 DRG1Q9Y295 367 aaKnown RBP9.42□□□□□ -0.9
VPS35-211ENST00000569950 KNL1Q8NG31 2342 aa9.42□□□□□ -0.9
VPS35-211ENST00000569950 TRPM6Q9BX84 2022 aa9.41□□□□□ -0.9
VPS35-211ENST00000569950 TCRBV21S2A2A0A5A6 115 aa9.41□□□□□ -0.9
VPS35-211ENST00000569950 TSPAN11A1L157 253 aa9.41□□□□□ -0.9
VPS35-211ENST00000569950 C5orf60A6NFR6 353 aa9.41□□□□□ -0.9
VPS35-211ENST00000569950 ESPNB1AK53 854 aa9.41□□□□□ -0.9
VPS35-211ENST00000569950 H7C0C1 242 aa9.41□□□□□ -0.9
VPS35-211ENST00000569950 PLK4O00444 970 aa9.41□□□□□ -0.9
VPS35-211ENST00000569950 STK25O00506 426 aa9.41□□□□□ -0.9
VPS35-211ENST00000569950 ALOX15BO15296 676 aa9.41□□□□□ -0.9
VPS35-211ENST00000569950 FZD6O60353 706 aa9.41□□□□□ -0.9
VPS35-211ENST00000569950 PIGNO95427 931 aa9.41□□□□□ -0.9
VPS35-211ENST00000569950 METTL18O95568 372 aa9.41□□□□□ -0.9
VPS35-211ENST00000569950 IGLV3-19P01714 112 aa9.41□□□□□ -0.9
VPS35-211ENST00000569950 ITGAVP06756 1048 aa9.41□□□□□ -0.9
VPS35-211ENST00000569950 NFKB1P19838 968 aa9.41□□□□□ -0.9
VPS35-211ENST00000569950 CHRNA3P32297 505 aa9.41□□□□□ -0.9
VPS35-211ENST00000569950 CETN2P41208 172 aa9.41□□□□□ -0.9
VPS35-211ENST00000569950 ATP5OP48047 213 aa9.41□□□□□ -0.9
VPS35-211ENST00000569950 PXNP49023 591 aaPredicted RBP9.41□□□□□ -0.9
VPS35-211ENST00000569950 RHOAP61586 193 aa9.41□□□□□ -0.9
VPS35-211ENST00000569950 ST8SIA6P61647 398 aa9.41□□□□□ -0.9
VPS35-211ENST00000569950 SKOR1P84550 965 aa9.41□□□□□ -0.9
VPS35-211ENST00000569950 TRAF2Q12933 501 aa9.41□□□□□ -0.9
VPS35-211ENST00000569950 BYSLQ13895 437 aaKnown RBP9.41□□□□□ -0.9
VPS35-211ENST00000569950 ELAVL3Q14576 367 aaKnown RBP9.41□□□□□ -0.9
VPS35-211ENST00000569950 ACCSLQ4AC99 568 aa9.41□□□□□ -0.9
VPS35-211ENST00000569950 TMEM31Q5JXX7 168 aa9.41□□□□□ -0.9
VPS35-211ENST00000569950 MARC1Q5VT66 337 aa9.41□□□□□ -0.9
VPS35-211ENST00000569950 TIGD7Q6NT04 549 aaPredicted RBP9.41□□□□□ -0.9
VPS35-211ENST00000569950 KDELC1Q6UW63 502 aa9.41□□□□□ -0.9
VPS35-211ENST00000569950 BZW1Q7L1Q6 419 aaKnown RBP9.41□□□□□ -0.9
VPS35-211ENST00000569950 TRMT11Q7Z4G4 463 aaKnown RBP9.41□□□□□ -0.9
VPS35-211ENST00000569950 SRLQ86TD4 932 aa9.41□□□□□ -0.9
VPS35-211ENST00000569950 ZNF354CQ86Y25 554 aa9.41□□□□□ -0.9
VPS35-211ENST00000569950 CDKL3Q8IVW4 592 aaPredicted RBP9.41□□□□□ -0.9
VPS35-211ENST00000569950 C1orf210Q8IVY1 113 aa9.41□□□□□ -0.9
VPS35-211ENST00000569950 FRMD1Q8N878 549 aa9.41□□□□□ -0.9
VPS35-211ENST00000569950 FAM71DQ8N9W8 422 aa9.41□□□□□ -0.9
VPS35-211ENST00000569950 CCDC26Q8TAB7 109 aa9.41□□□□□ -0.9
VPS35-211ENST00000569950 CCDC110Q8TBZ0 833 aa9.41□□□□□ -0.9
VPS35-211ENST00000569950 IMP4Q96G21 291 aaKnown RBP9.41□□□□□ -0.9
VPS35-211ENST00000569950 SPATA13Q96N96 652 aa9.41□□□□□ -0.9
VPS35-211ENST00000569950 SMIM14Q96QK8 99 aa9.41□□□□□ -0.9
VPS35-211ENST00000569950 NUDCD1Q96RS6 583 aa9.41□□□□□ -0.9
VPS35-211ENST00000569950 MLPHQ9BV36 600 aaPredicted RBP9.41□□□□□ -0.9
VPS35-211ENST00000569950 FRMD8P1Q9BZ68 369 aaPredicted RBP9.41□□□□□ -0.9
VPS35-211ENST00000569950 CPEB1Q9BZB8 566 aaKnown RBP9.41□□□□□ -0.9
VPS35-211ENST00000569950 GLOD4Q9HC38 313 aa9.41□□□□□ -0.9
VPS35-211ENST00000569950 NT5MQ9NPB1 228 aa9.41□□□□□ -0.9
VPS35-211ENST00000569950 USP36Q9P275 1121 aaKnown RBP9.41□□□□□ -0.9
VPS35-211ENST00000569950 HECAQ9UBI9 543 aaPredicted RBP9.41□□□□□ -0.9
VPS35-211ENST00000569950 SUN2Q9UH99 717 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms