RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 PCIF1Q9H4Z3 704 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 PDLIM7Q9NR12 457 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 AAASQ9NRG9 546 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 THG1LQ9NWX6 298 aaKnown RBP10.98□□□□□ -0.65
CLK3-226ENST00000569406 SIRT5Q9NXA8 310 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 DNMT3BQ9UBC3 853 aaKnown RBP10.98□□□□□ -0.65
CLK3-226ENST00000569406 TLK1Q9UKI8 766 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 PCOLCE2Q9UKZ9 415 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 RPH3AQ9Y2J0 694 aaPredicted RBP10.98□□□□□ -0.65
CLK3-226ENST00000569406 STON1Q9Y6Q2 735 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 A0A0A6YYK5 440 aaPredicted RBP10.98□□□□□ -0.65
CLK3-226ENST00000569406 NOP56O00567 594 aaKnown RBP10.98□□□□□ -0.65
CLK3-226ENST00000569406 DDX3YO15523 660 aaKnown RBP10.98□□□□□ -0.65
CLK3-226ENST00000569406 SSX5O60225 188 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 NOS1APO75052 506 aaPredicted RBP10.98□□□□□ -0.65
CLK3-226ENST00000569406 DEAF1O75398 565 aaPredicted RBP10.98□□□□□ -0.65
CLK3-226ENST00000569406 OLFM2O95897 454 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 CD4P01730 458 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 ADRB2P07550 413 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 GRIA3P42263 894 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 CASP3P42574 277 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 AP2S1P53680 142 aaPredicted RBP10.98□□□□□ -0.65
CLK3-226ENST00000569406 GALCP54803 685 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 MAPRE2Q15555 327 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 TRIM72Q6ZMU5 477 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 BBS7Q8IWZ6 715 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 ZDHHC14Q8IZN3 488 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 DEFB107AQ8IZN7 70 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 FAM47BQ8NA70 645 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 RAET1EQ8TD07 263 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 INTS2Q9H0H0 1204 aaKnown RBP10.98□□□□□ -0.65
CLK3-226ENST00000569406 ST6GALNAC4Q9H4F1 302 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 FNIP2Q9P278 1114 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 LGALS13Q9UHV8 139 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 TESMINQ9Y4I5 508 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 CEP350Q5VT06 3117 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 NDUFS6O75380 124 aaKnown RBP10.97□□□□□ -0.65
CLK3-226ENST00000569406 CBLP22681 906 aa10.97□□□□□ -0.65
CLK3-226ENST00000569406 RUNX1T1Q06455 604 aa10.97□□□□□ -0.65
CLK3-226ENST00000569406 RFTN1Q14699 578 aaPredicted RBP10.97□□□□□ -0.65
CLK3-226ENST00000569406 TAF1CQ15572 869 aaPredicted RBP10.97□□□□□ -0.65
CLK3-226ENST00000569406 C6orf10Q5SRN2 563 aa10.97□□□□□ -0.65
CLK3-226ENST00000569406 HMBOX1Q6NT76 420 aa10.97□□□□□ -0.65
CLK3-226ENST00000569406 TTC33Q6PID6 262 aaPredicted RBP10.97□□□□□ -0.65
CLK3-226ENST00000569406 ARSKQ6UWY0 536 aa10.97□□□□□ -0.65
CLK3-226ENST00000569406 PRELID2Q8N945 189 aa10.97□□□□□ -0.65
CLK3-226ENST00000569406 SLC20A1Q8WUM9 679 aa10.97□□□□□ -0.65
CLK3-226ENST00000569406 LIN7BQ9HAP6 207 aa10.97□□□□□ -0.65
CLK3-226ENST00000569406 PNPLA3Q9NST1 481 aa10.97□□□□□ -0.65
CLK3-226ENST00000569406 DNAJC12Q9UKB3 198 aa10.97□□□□□ -0.65
CLK3-226ENST00000569406 STRIP2Q9ULQ0 834 aa10.97□□□□□ -0.65
CLK3-226ENST00000569406 LOC100653049A0A140TA62 436 aa10.97□□□□□ -0.65
CLK3-226ENST00000569406 FAM25AB3EWG3 89 aa10.97□□□□□ -0.65
CLK3-226ENST00000569406 FAM25CB3EWG5 89 aa10.97□□□□□ -0.65
CLK3-226ENST00000569406 FAM25GB3EWG6 89 aa10.97□□□□□ -0.65
CLK3-226ENST00000569406 ZNF701M0R085 212 aaPredicted RBP10.97□□□□□ -0.65
CLK3-226ENST00000569406 SHOXO15266 292 aa10.97□□□□□ -0.65
CLK3-226ENST00000569406 KRT34O76011 436 aa10.97□□□□□ -0.65
CLK3-226ENST00000569406 P4HBP07237 508 aaKnown RBP10.97□□□□□ -0.65
CLK3-226ENST00000569406 SEPHS1P49903 392 aa10.97□□□□□ -0.65
CLK3-226ENST00000569406 RAB39AQ14964 217 aa10.97□□□□□ -0.65
CLK3-226ENST00000569406 DUSP7Q16829 419 aa10.97□□□□□ -0.65
CLK3-226ENST00000569406 PM20D1Q6GTS8 502 aa10.97□□□□□ -0.65
CLK3-226ENST00000569406 PIWIL3Q7Z3Z3 882 aaKnown RBP10.97□□□□□ -0.65
CLK3-226ENST00000569406 EID3Q8N140 333 aa10.97□□□□□ -0.65
CLK3-226ENST00000569406 SHCBP1Q8NEM2 672 aa10.97□□□□□ -0.65
CLK3-226ENST00000569406 OR2T3Q8NH03 318 aa10.97□□□□□ -0.65
CLK3-226ENST00000569406 ASB12Q8WXK4 309 aa10.97□□□□□ -0.65
CLK3-226ENST00000569406 DHX38Q92620 1227 aaKnown RBP10.97□□□□□ -0.65
CLK3-226ENST00000569406 SEMA4DQ92854 862 aa10.97□□□□□ -0.65
CLK3-226ENST00000569406 SH3YL1Q96HL8 342 aaPredicted RBP10.97□□□□□ -0.65
CLK3-226ENST00000569406 PITHD1Q9GZP4 211 aaPredicted RBP10.97□□□□□ -0.65
CLK3-226ENST00000569406 ACP6Q9NPH0 428 aa10.97□□□□□ -0.65
CLK3-226ENST00000569406 SENP1Q9P0U3 644 aa10.97□□□□□ -0.65
CLK3-226ENST00000569406 APEX2Q9UBZ4 518 aa10.97□□□□□ -0.65
CLK3-226ENST00000569406 CDH22Q9UJ99 828 aa10.97□□□□□ -0.65
CLK3-226ENST00000569406 USTQ9Y2C2 406 aa10.97□□□□□ -0.65
CLK3-226ENST00000569406 A0A0X1KG70 313 aa10.97□□□□□ -0.65
CLK3-226ENST00000569406 E2F3O00716 465 aa10.97□□□□□ -0.65
CLK3-226ENST00000569406 PGK2P07205 417 aa10.97□□□□□ -0.65
CLK3-226ENST00000569406 DLDP09622 509 aaKnown RBP10.97□□□□□ -0.65
CLK3-226ENST00000569406 PLS3P13797 630 aa10.97□□□□□ -0.65
CLK3-226ENST00000569406 ZNF3P17036 446 aa10.97□□□□□ -0.65
CLK3-226ENST00000569406 CDH5P33151 784 aaPredicted RBP10.97□□□□□ -0.65
CLK3-226ENST00000569406 TTKP33981 857 aa10.97□□□□□ -0.65
CLK3-226ENST00000569406 MSX2P35548 267 aaPredicted RBP10.97□□□□□ -0.65
CLK3-226ENST00000569406 STX3Q13277 289 aa10.97□□□□□ -0.65
CLK3-226ENST00000569406 STAT4Q14765 748 aa10.97□□□□□ -0.65
CLK3-226ENST00000569406 TAS1R3Q7RTX0 852 aa10.97□□□□□ -0.65
CLK3-226ENST00000569406 SAMD7Q7Z3H4 446 aa10.97□□□□□ -0.65
CLK3-226ENST00000569406 PHC2Q8IXK0 858 aa10.97□□□□□ -0.65
CLK3-226ENST00000569406 UBL4BQ8N7F7 174 aa10.97□□□□□ -0.65
CLK3-226ENST00000569406 ADCY4Q8NFM4 1077 aa10.97□□□□□ -0.65
CLK3-226ENST00000569406 LPAR1Q92633 364 aa10.97□□□□□ -0.65
CLK3-226ENST00000569406 PDCD2LQ9BRP1 358 aa10.97□□□□□ -0.65
CLK3-226ENST00000569406 OSBPL11Q9BXB4 747 aa10.97□□□□□ -0.65
CLK3-226ENST00000569406 PXMP2Q9NR77 195 aa10.97□□□□□ -0.65
CLK3-226ENST00000569406 ABCB10Q9NRK6 738 aa10.97□□□□□ -0.65
CLK3-226ENST00000569406 ZNF112Q9UJU3 913 aa10.97□□□□□ -0.65
CLK3-226ENST00000569406 OTOFQ9HC10 1997 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms