RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 MIF4GDA9UHW6 222 aaKnown RBP19.83■□□□□ 0.77
CLN3-225ENST00000566824 KPNA3O00505 521 aaPredicted RBP19.83■□□□□ 0.77
CLN3-225ENST00000566824 MAP3K13O43283 966 aa19.83■□□□□ 0.77
CLN3-225ENST00000566824 C5AR1P21730 350 aa19.83■□□□□ 0.77
CLN3-225ENST00000566824 PTGER3P43115 390 aa19.83■□□□□ 0.77
CLN3-225ENST00000566824 SNRPD1P62314 119 aaKnown RBP19.83■□□□□ 0.77
CLN3-225ENST00000566824 TFDP2Q14188 446 aa19.83■□□□□ 0.77
CLN3-225ENST00000566824 PMS2CLQ68D20 193 aa19.83■□□□□ 0.77
CLN3-225ENST00000566824 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP19.83■□□□□ 0.77
CLN3-225ENST00000566824 BBS12Q6ZW61 710 aa19.83■□□□□ 0.77
CLN3-225ENST00000566824 ARMCX6Q7L4S7 300 aa19.83■□□□□ 0.77
CLN3-225ENST00000566824 DSG4Q86SJ6 1040 aa19.83■□□□□ 0.77
CLN3-225ENST00000566824 SLC41A1Q8IVJ1 513 aa19.83■□□□□ 0.77
CLN3-225ENST00000566824 CCNYQ8ND76 341 aa19.83■□□□□ 0.77
CLN3-225ENST00000566824 MAML1Q92585 1016 aa19.83■□□□□ 0.77
CLN3-225ENST00000566824 ZC3H10Q96K80 434 aaKnown RBP19.83■□□□□ 0.77
CLN3-225ENST00000566824 SPACA7Q96KW9 195 aa19.83■□□□□ 0.77
CLN3-225ENST00000566824 CCDC114Q96M63 670 aa19.83■□□□□ 0.77
CLN3-225ENST00000566824 GDAP1L1Q96MZ0 367 aa19.83■□□□□ 0.77
CLN3-225ENST00000566824 FAM118BQ9BPY3 351 aa19.83■□□□□ 0.77
CLN3-225ENST00000566824 CINPQ9BW66 212 aaPredicted RBP19.83■□□□□ 0.77
CLN3-225ENST00000566824 GPR174Q9BXC1 333 aa19.83■□□□□ 0.77
CLN3-225ENST00000566824 OSBPL8Q9BZF1 889 aa19.83■□□□□ 0.77
CLN3-225ENST00000566824 RIF1Q5UIP0 2472 aaKnown RBP19.83■□□□□ 0.76
CLN3-225ENST00000566824 TCRBV7S2A1N4TA0A589 114 aa19.82■□□□□ 0.76
CLN3-225ENST00000566824 MATN3O15232 486 aa19.82■□□□□ 0.76
CLN3-225ENST00000566824 PIGNO95427 931 aa19.82■□□□□ 0.76
CLN3-225ENST00000566824 POP4O95707 220 aaKnown RBP19.82■□□□□ 0.76
CLN3-225ENST00000566824 IGSF6O95976 241 aa19.82■□□□□ 0.76
CLN3-225ENST00000566824 ZFXP17010 805 aaPredicted RBP19.82■□□□□ 0.76
CLN3-225ENST00000566824 CCNCP24863 283 aa19.82■□□□□ 0.76
CLN3-225ENST00000566824 PTPN7P35236 360 aa19.82■□□□□ 0.76
CLN3-225ENST00000566824 COPS2P61201 443 aa19.82■□□□□ 0.76
CLN3-225ENST00000566824 MAXP61244 160 aa19.82■□□□□ 0.76
CLN3-225ENST00000566824 RPL6Q02878 288 aaKnown RBP19.82■□□□□ 0.76
CLN3-225ENST00000566824 IHHQ14623 411 aa19.82■□□□□ 0.76
CLN3-225ENST00000566824 TTC31Q49AM3 519 aaPredicted RBP19.82■□□□□ 0.76
CLN3-225ENST00000566824 SRLQ86TD4 932 aa19.82■□□□□ 0.76
CLN3-225ENST00000566824 TEX26Q8N6G2 289 aa19.82■□□□□ 0.76
CLN3-225ENST00000566824 UBL4BQ8N7F7 174 aa19.82■□□□□ 0.76
CLN3-225ENST00000566824 NKD2Q969F2 451 aaPredicted RBP19.82■□□□□ 0.76
CLN3-225ENST00000566824 FAM131CQ96AQ9 280 aa19.82■□□□□ 0.76
CLN3-225ENST00000566824 HDAC11Q96DB2 347 aa19.82■□□□□ 0.76
CLN3-225ENST00000566824 PSKH2Q96QS6 385 aa19.82■□□□□ 0.76
CLN3-225ENST00000566824 OMDQ99983 421 aa19.82■□□□□ 0.76
CLN3-225ENST00000566824 TLR10Q9BXR5 811 aa19.82■□□□□ 0.76
CLN3-225ENST00000566824 C6orf106Q9H6K1 298 aaPredicted RBP19.82■□□□□ 0.76
CLN3-225ENST00000566824 C10orf88Q9H8K7 445 aa19.82■□□□□ 0.76
CLN3-225ENST00000566824 SEPT3Q9UH03 358 aa19.82■□□□□ 0.76
CLN3-225ENST00000566824 FARP1Q9Y4F1 1045 aaPredicted RBP19.82■□□□□ 0.76
CLN3-225ENST00000566824 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP19.82■□□□□ 0.76
CLN3-225ENST00000566824 RALGAPA1Q6GYQ0 2036 aa19.82■□□□□ 0.76
CLN3-225ENST00000566824 C1QTNF3-AMACRE9PGA6 284 aa19.81■□□□□ 0.76
CLN3-225ENST00000566824 KCNK1O00180 336 aa19.81■□□□□ 0.76
CLN3-225ENST00000566824 PRNPP04156 253 aa19.81■□□□□ 0.76
CLN3-225ENST00000566824 UGT2B4P06133 528 aa19.81■□□□□ 0.76
CLN3-225ENST00000566824 TAS2R38P59533 333 aa19.81■□□□□ 0.76
CLN3-225ENST00000566824 PPIDQ08752 370 aaKnown RBP19.81■□□□□ 0.76
CLN3-225ENST00000566824 ZBTB17Q13105 803 aa19.81■□□□□ 0.76
CLN3-225ENST00000566824 BYSLQ13895 437 aaKnown RBP19.81■□□□□ 0.76
CLN3-225ENST00000566824 RFTN1Q14699 578 aaPredicted RBP19.81■□□□□ 0.76
CLN3-225ENST00000566824 PIP5KL1Q5T9C9 394 aa19.81■□□□□ 0.76
CLN3-225ENST00000566824 AGBL4Q5VU57 503 aa19.81■□□□□ 0.76
CLN3-225ENST00000566824 FAM46CQ5VWP2 391 aa19.81■□□□□ 0.76
CLN3-225ENST00000566824 USP30Q70CQ3 517 aa19.81■□□□□ 0.76
CLN3-225ENST00000566824 PARS2Q7L3T8 475 aaKnown RBP19.81■□□□□ 0.76
CLN3-225ENST00000566824 LRRC49Q8IUZ0 686 aa19.81■□□□□ 0.76
CLN3-225ENST00000566824 CCDC13Q8IYE1 715 aa19.81■□□□□ 0.76
CLN3-225ENST00000566824 CEP41Q9BYV8 373 aa19.81■□□□□ 0.76
CLN3-225ENST00000566824 NT5MQ9NPB1 228 aa19.81■□□□□ 0.76
CLN3-225ENST00000566824 SCML1Q9UN30 329 aa19.81■□□□□ 0.76
CLN3-225ENST00000566824 ZNF292O60281 2723 aa19.81■□□□□ 0.76
CLN3-225ENST00000566824 PRR23AA6NEV1 266 aa19.8■□□□□ 0.76
CLN3-225ENST00000566824 LMNAP02545 664 aaKnown RBP19.8■□□□□ 0.76
CLN3-225ENST00000566824 CR2P20023 1033 aa19.8■□□□□ 0.76
CLN3-225ENST00000566824 MX2P20592 715 aa19.8■□□□□ 0.76
CLN3-225ENST00000566824 TGM2P21980 687 aa19.8■□□□□ 0.76
CLN3-225ENST00000566824 OXTRP30559 389 aa19.8■□□□□ 0.76
CLN3-225ENST00000566824 MMP13P45452 471 aa19.8■□□□□ 0.76
CLN3-225ENST00000566824 AP1B1Q10567 949 aa19.8■□□□□ 0.76
CLN3-225ENST00000566824 ZNF235Q14590 738 aa19.8■□□□□ 0.76
CLN3-225ENST00000566824 MARC1Q5VT66 337 aa19.8■□□□□ 0.76
CLN3-225ENST00000566824 CAMK1DQ8IU85 385 aa19.8■□□□□ 0.76
CLN3-225ENST00000566824 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP19.8■□□□□ 0.76
CLN3-225ENST00000566824 KLHL32Q96NJ5 620 aa19.8■□□□□ 0.76
CLN3-225ENST00000566824 NCKAP1Q9Y2A7 1128 aa19.8■□□□□ 0.76
CLN3-225ENST00000566824 ZSCAN12O43309 604 aa19.79■□□□□ 0.76
CLN3-225ENST00000566824 PLXNA2O75051 1894 aa19.79■□□□□ 0.76
CLN3-225ENST00000566824 NDUFS2O75306 463 aa19.79■□□□□ 0.76
CLN3-225ENST00000566824 SEMA4FO95754 770 aa19.79■□□□□ 0.76
CLN3-225ENST00000566824 JCHAINP01591 159 aa19.79■□□□□ 0.76
CLN3-225ENST00000566824 HLA-DQB2P05538 268 aa19.79■□□□□ 0.76
CLN3-225ENST00000566824 CCNB1P14635 433 aa19.79■□□□□ 0.76
CLN3-225ENST00000566824 ITIH2P19823 946 aa19.79■□□□□ 0.76
CLN3-225ENST00000566824 CSNK1DP48730 415 aa19.79■□□□□ 0.76
CLN3-225ENST00000566824 DHPSP49366 369 aaPredicted RBP19.79■□□□□ 0.76
CLN3-225ENST00000566824 SCNN1BP51168 640 aa19.79■□□□□ 0.76
CLN3-225ENST00000566824 ADPRHP54922 357 aa19.79■□□□□ 0.76
CLN3-225ENST00000566824 HNRNPDQ14103 355 aaKnown RBP19.79■□□□□ 0.76
CLN3-225ENST00000566824 PDK1Q15118 436 aa19.79■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms