RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 THSD1Q9NS62 852 aa4.97□□□□□ -1.61
LINC00560-201ENST00000564593 RAP2CQ9Y3L5 183 aa4.97□□□□□ -1.61
LINC00560-201ENST00000564593 SCINQ9Y6U3 715 aa4.97□□□□□ -1.61
LINC00560-201ENST00000564593 SETD1BQ9UPS6 1966 aaKnown RBP4.97□□□□□ -1.61
LINC00560-201ENST00000564593 LDHCP07864 332 aa4.96□□□□□ -1.62
LINC00560-201ENST00000564593 ICAM3P32942 547 aa4.96□□□□□ -1.62
LINC00560-201ENST00000564593 CLNS1AP54105 237 aaKnown RBP4.96□□□□□ -1.62
LINC00560-201ENST00000564593 MAMLD1Q13495 774 aa4.96□□□□□ -1.62
LINC00560-201ENST00000564593 PDE1CQ14123 709 aaPredicted RBP4.96□□□□□ -1.62
LINC00560-201ENST00000564593 EIF4A2Q14240 407 aaKnown RBP4.96□□□□□ -1.62
LINC00560-201ENST00000564593 PIK3CD-AS1Q5SR53 167 aa4.96□□□□□ -1.62
LINC00560-201ENST00000564593 SNX30Q5VWJ9 437 aa4.96□□□□□ -1.62
LINC00560-201ENST00000564593 ATG9BQ674R7 924 aa4.96□□□□□ -1.62
LINC00560-201ENST00000564593 DEF8Q6ZN54 512 aa4.96□□□□□ -1.62
LINC00560-201ENST00000564593 PXKQ7Z7A4 578 aa4.96□□□□□ -1.62
LINC00560-201ENST00000564593 ADSSL1Q8N142 457 aa4.96□□□□□ -1.62
LINC00560-201ENST00000564593 LRRC57Q8N9N7 239 aa4.96□□□□□ -1.62
LINC00560-201ENST00000564593 SLC44A5Q8NCS7 719 aa4.96□□□□□ -1.62
LINC00560-201ENST00000564593 CADM4Q8NFZ8 388 aa4.96□□□□□ -1.62
LINC00560-201ENST00000564593 OR4N2Q8NGD1 307 aa4.96□□□□□ -1.62
LINC00560-201ENST00000564593 TMEM170AQ8WVE7 144 aa4.96□□□□□ -1.62
LINC00560-201ENST00000564593 TREX2Q9BQ50 279 aaPredicted RBP4.96□□□□□ -1.62
LINC00560-201ENST00000564593 WDR83Q9BRX9 315 aaKnown RBP4.96□□□□□ -1.62
LINC00560-201ENST00000564593 RNF146Q9NTX7 359 aa4.96□□□□□ -1.62
LINC00560-201ENST00000564593 DDX52Q9Y2R4 599 aaKnown RBP eCLIP4.96□□□□□ -1.62
LINC00560-201ENST00000564593 ADGRF5Q8IZF2 1346 aa4.96□□□□□ -1.62
LINC00560-201ENST00000564593 RUSC2Q8N2Y8 1516 aa4.96□□□□□ -1.62
LINC00560-201ENST00000564593 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP4.95□□□□□ -1.62
LINC00560-201ENST00000564593 C17orf102A2RUQ5 167 aa4.95□□□□□ -1.62
LINC00560-201ENST00000564593 TLR2O60603 784 aa4.95□□□□□ -1.62
LINC00560-201ENST00000564593 SEC14L2O76054 403 aa4.95□□□□□ -1.62
LINC00560-201ENST00000564593 CCNDBP1O95273 360 aa4.95□□□□□ -1.62
LINC00560-201ENST00000564593 SCGB1D1O95968 90 aa4.95□□□□□ -1.62
LINC00560-201ENST00000564593 UNGP13051 313 aaPredicted RBP4.95□□□□□ -1.62
LINC00560-201ENST00000564593 RFC1P35251 1148 aaPredicted RBP4.95□□□□□ -1.62
LINC00560-201ENST00000564593 BSGP35613 385 aa4.95□□□□□ -1.62
LINC00560-201ENST00000564593 EFNA5P52803 228 aa4.95□□□□□ -1.62
LINC00560-201ENST00000564593 RARSP54136 660 aaKnown RBP4.95□□□□□ -1.62
LINC00560-201ENST00000564593 GAD2Q05329 585 aa4.95□□□□□ -1.62
LINC00560-201ENST00000564593 SLC18A2Q05940 514 aa4.95□□□□□ -1.62
LINC00560-201ENST00000564593 PKP1Q13835 747 aa4.95□□□□□ -1.62
LINC00560-201ENST00000564593 GSTA3Q16772 222 aa4.95□□□□□ -1.62
LINC00560-201ENST00000564593 C6orf10Q5SRN2 563 aa4.95□□□□□ -1.62
LINC00560-201ENST00000564593 CDC73Q6P1J9 531 aa4.95□□□□□ -1.62
LINC00560-201ENST00000564593 SLC2A7Q6PXP3 512 aa4.95□□□□□ -1.62
LINC00560-201ENST00000564593 SLC46A3Q7Z3Q1 461 aa4.95□□□□□ -1.62
LINC00560-201ENST00000564593 SERPINA11Q86U17 422 aa4.95□□□□□ -1.62
LINC00560-201ENST00000564593 ANKRD13BQ86YJ7 626 aa4.95□□□□□ -1.62
LINC00560-201ENST00000564593 TMC8Q8IU68 726 aa4.95□□□□□ -1.62
LINC00560-201ENST00000564593 ZMIZ2Q8NF64 920 aa4.95□□□□□ -1.62
LINC00560-201ENST00000564593 SDF4Q9BRK5 362 aa4.95□□□□□ -1.62
LINC00560-201ENST00000564593 PRSS22Q9GZN4 317 aa4.95□□□□□ -1.62
LINC00560-201ENST00000564593 CTNNAL1Q9UBT7 734 aa4.95□□□□□ -1.62
LINC00560-201ENST00000564593 SLC4A4Q9Y6R1 1079 aa4.95□□□□□ -1.62
LINC00560-201ENST00000564593 CCDC180Q9P1Z9 1646 aa4.95□□□□□ -1.62
LINC00560-201ENST00000564593 A0A096LPK6 155 aa4.95□□□□□ -1.62
LINC00560-201ENST00000564593 TTC36A6NLP5 189 aa4.95□□□□□ -1.62
LINC00560-201ENST00000564593 ADAM10O14672 748 aa4.95□□□□□ -1.62
LINC00560-201ENST00000564593 DOK2O60496 412 aa4.95□□□□□ -1.62
LINC00560-201ENST00000564593 TOP3BO95985 862 aaKnown RBP4.95□□□□□ -1.62
LINC00560-201ENST00000564593 CELA2AP08217 269 aa4.95□□□□□ -1.62
LINC00560-201ENST00000564593 ACADMP11310 421 aa4.95□□□□□ -1.62
LINC00560-201ENST00000564593 NFKBIAP25963 317 aa4.95□□□□□ -1.62
LINC00560-201ENST00000564593 MAPK4P31152 587 aa4.95□□□□□ -1.62
LINC00560-201ENST00000564593 RGS19P49795 217 aa4.95□□□□□ -1.62
LINC00560-201ENST00000564593 SRSF4Q08170 494 aaKnown RBP4.95□□□□□ -1.62
LINC00560-201ENST00000564593 TMEM115Q12893 351 aaPredicted RBP4.95□□□□□ -1.62
LINC00560-201ENST00000564593 RUNX2Q13950 521 aa4.95□□□□□ -1.62
LINC00560-201ENST00000564593 KLHL24Q6TFL4 600 aa4.95□□□□□ -1.62
LINC00560-201ENST00000564593 FAM83HQ6ZRV2 1179 aaPredicted RBP4.95□□□□□ -1.62
LINC00560-201ENST00000564593 FASTKD5Q7L8L6 764 aaKnown RBP4.95□□□□□ -1.62
LINC00560-201ENST00000564593 FAM217AQ8IXS0 508 aa4.95□□□□□ -1.62
LINC00560-201ENST00000564593 KIAA2013Q8IYS2 634 aa4.95□□□□□ -1.62
LINC00560-201ENST00000564593 CADM3Q8N126 398 aa4.95□□□□□ -1.62
LINC00560-201ENST00000564593 HORMAD2Q8N7B1 307 aa4.95□□□□□ -1.62
LINC00560-201ENST00000564593 PRSS3P2Q8NHM4 247 aa4.95□□□□□ -1.62
LINC00560-201ENST00000564593 H2AFJQ9BTM1 129 aa4.95□□□□□ -1.62
LINC00560-201ENST00000564593 ITPAQ9BY32 194 aa4.95□□□□□ -1.62
LINC00560-201ENST00000564593 NUF2Q9BZD4 464 aa4.95□□□□□ -1.62
LINC00560-201ENST00000564593 PRKRIP1Q9H875 184 aaPredicted RBP4.95□□□□□ -1.62
LINC00560-201ENST00000564593 WDR6Q9NNW5 1121 aaKnown RBP4.95□□□□□ -1.62
LINC00560-201ENST00000564593 NRIP3Q9NQ35 241 aa4.95□□□□□ -1.62
LINC00560-201ENST00000564593 EIF2B3Q9NR50 452 aaKnown RBP4.95□□□□□ -1.62
LINC00560-201ENST00000564593 LIMA1Q9UHB6 759 aaKnown RBP4.95□□□□□ -1.62
LINC00560-201ENST00000564593 A4GNTQ9UNA3 340 aa4.95□□□□□ -1.62
LINC00560-201ENST00000564593 KAT6BQ8WYB5 2073 aa4.94□□□□□ -1.62
LINC00560-201ENST00000564593 TTBK1Q5TCY1 1321 aaPredicted RBP4.94□□□□□ -1.62
LINC00560-201ENST00000564593 A0A1W2PPC1 479 aa4.94□□□□□ -1.62
LINC00560-201ENST00000564593 CBY3A6NI87 242 aa4.94□□□□□ -1.62
LINC00560-201ENST00000564593 LRRC53A6NM62 1247 aa4.94□□□□□ -1.62
LINC00560-201ENST00000564593 E5RJQ4 531 aa4.94□□□□□ -1.62
LINC00560-201ENST00000564593 HSPB6O14558 160 aa4.94□□□□□ -1.62
LINC00560-201ENST00000564593 GFPT2O94808 682 aa4.94□□□□□ -1.62
LINC00560-201ENST00000564593 SEC31AO94979 1220 aaKnown RBP4.94□□□□□ -1.62
LINC00560-201ENST00000564593 HEXAP06865 529 aa4.94□□□□□ -1.62
LINC00560-201ENST00000564593 PRR35P0CG20 571 aa4.94□□□□□ -1.62
LINC00560-201ENST00000564593 IRF1P10914 325 aa4.94□□□□□ -1.62
LINC00560-201ENST00000564593 CHRNB1P11230 501 aa4.94□□□□□ -1.62
LINC00560-201ENST00000564593 CYP19A1P11511 503 aaPredicted RBP4.94□□□□□ -1.62
LINC00560-201ENST00000564593 LAMP2P13473 410 aa4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms