RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 CCNCP24863 283 aa9.93□□□□□ -0.82
CLK3-208ENST00000562626 NNMTP40261 264 aa9.93□□□□□ -0.82
CLK3-208ENST00000562626 MMP13P45452 471 aa9.93□□□□□ -0.82
CLK3-208ENST00000562626 TPMTP51580 245 aa9.93□□□□□ -0.82
CLK3-208ENST00000562626 RHOAP61586 193 aa9.93□□□□□ -0.82
CLK3-208ENST00000562626 GNG11P61952 73 aa9.93□□□□□ -0.82
CLK3-208ENST00000562626 IFI35P80217 286 aaPredicted RBP9.93□□□□□ -0.82
CLK3-208ENST00000562626 DSC2Q02487 901 aa9.93□□□□□ -0.82
CLK3-208ENST00000562626 NIPAL4Q0D2K0 466 aa9.93□□□□□ -0.82
CLK3-208ENST00000562626 AP1B1Q10567 949 aa9.93□□□□□ -0.82
CLK3-208ENST00000562626 WASHC5Q12768 1159 aa9.93□□□□□ -0.82
CLK3-208ENST00000562626 CNTN1Q12860 1018 aa9.93□□□□□ -0.82
CLK3-208ENST00000562626 ELAVL3Q14576 367 aaKnown RBP9.93□□□□□ -0.82
CLK3-208ENST00000562626 CST6Q15828 149 aa9.93□□□□□ -0.82
CLK3-208ENST00000562626 ZNF528Q3MIS6 628 aa9.93□□□□□ -0.82
CLK3-208ENST00000562626 ARSIQ5FYB1 569 aa9.93□□□□□ -0.82
CLK3-208ENST00000562626 LRRC73Q5JTD7 316 aa9.93□□□□□ -0.82
CLK3-208ENST00000562626 ZNF776Q68DI1 518 aaPredicted RBP9.93□□□□□ -0.82
CLK3-208ENST00000562626 FAM124AQ86V42 546 aa9.93□□□□□ -0.82
CLK3-208ENST00000562626 CCDC13Q8IYE1 715 aa9.93□□□□□ -0.82
CLK3-208ENST00000562626 RYBPQ8N488 228 aaPredicted RBP9.93□□□□□ -0.82
CLK3-208ENST00000562626 CCNYQ8ND76 341 aa9.93□□□□□ -0.82
CLK3-208ENST00000562626 PIP4K2CQ8TBX8 421 aa9.93□□□□□ -0.82
CLK3-208ENST00000562626 SIPA1Q96FS4 1042 aa9.93□□□□□ -0.82
CLK3-208ENST00000562626 ZNF599Q96NL3 588 aa9.93□□□□□ -0.82
CLK3-208ENST00000562626 QKIQ96PU8 341 aaKnown RBP eCLIP9.93□□□□□ -0.82
CLK3-208ENST00000562626 SMIM14Q96QK8 99 aa9.93□□□□□ -0.82
CLK3-208ENST00000562626 PSKH2Q96QS6 385 aa9.93□□□□□ -0.82
CLK3-208ENST00000562626 IL12RB2Q99665 862 aa9.93□□□□□ -0.82
CLK3-208ENST00000562626 CARD9Q9H257 536 aa9.93□□□□□ -0.82
CLK3-208ENST00000562626 PABPC3Q9H361 631 aaKnown RBP9.93□□□□□ -0.82
CLK3-208ENST00000562626 ZDHHC6Q9H6R6 413 aa9.93□□□□□ -0.82
CLK3-208ENST00000562626 NT5MQ9NPB1 228 aa9.93□□□□□ -0.82
CLK3-208ENST00000562626 DONSONQ9NYP3 566 aa9.93□□□□□ -0.82
CLK3-208ENST00000562626 USP36Q9P275 1121 aaKnown RBP9.93□□□□□ -0.82
CLK3-208ENST00000562626 EFR3BQ9Y2G0 817 aa9.93□□□□□ -0.82
CLK3-208ENST00000562626 IGHV1OR15-9A0A0B4J2B8 117 aa9.92□□□□□ -0.82
CLK3-208ENST00000562626 A0A1W2PP55 124 aa9.92□□□□□ -0.82
CLK3-208ENST00000562626 F5H423 210 aaPredicted RBP9.92□□□□□ -0.82
CLK3-208ENST00000562626 KRIT1O00522 736 aa9.92□□□□□ -0.82
CLK3-208ENST00000562626 MATN3O15232 486 aa9.92□□□□□ -0.82
CLK3-208ENST00000562626 KIF5CO60282 957 aa9.92□□□□□ -0.82
CLK3-208ENST00000562626 IL1BP01584 269 aa9.92□□□□□ -0.82
CLK3-208ENST00000562626 UGT2B4P06133 528 aa9.92□□□□□ -0.82
CLK3-208ENST00000562626 MMP2P08253 660 aa9.92□□□□□ -0.82
CLK3-208ENST00000562626 CCNB1P14635 433 aa9.92□□□□□ -0.82
CLK3-208ENST00000562626 ZFXP17010 805 aaPredicted RBP9.92□□□□□ -0.82
CLK3-208ENST00000562626 PTPN3P26045 913 aa9.92□□□□□ -0.82
CLK3-208ENST00000562626 RBL1P28749 1068 aa9.92□□□□□ -0.82
CLK3-208ENST00000562626 SLC8A1P32418 973 aa9.92□□□□□ -0.82
CLK3-208ENST00000562626 ACSL1P33121 698 aa9.92□□□□□ -0.82
CLK3-208ENST00000562626 CD68P34810 354 aaPredicted RBP9.92□□□□□ -0.82
CLK3-208ENST00000562626 P2RY2P41231 377 aa9.92□□□□□ -0.82
CLK3-208ENST00000562626 NR2C2P49116 596 aa9.92□□□□□ -0.82
CLK3-208ENST00000562626 NUBP1P53384 320 aa9.92□□□□□ -0.82
CLK3-208ENST00000562626 GDF10P55107 478 aa9.92□□□□□ -0.82
CLK3-208ENST00000562626 GEMIN4P57678 1058 aaKnown RBP9.92□□□□□ -0.82
CLK3-208ENST00000562626 TAS2R38P59533 333 aa9.92□□□□□ -0.82
CLK3-208ENST00000562626 EIF3EP60228 445 aaKnown RBP9.92□□□□□ -0.82
CLK3-208ENST00000562626 SNRPD1P62314 119 aaKnown RBP9.92□□□□□ -0.82
CLK3-208ENST00000562626 SEMG2Q02383 582 aa9.92□□□□□ -0.82
CLK3-208ENST00000562626 PDK1Q15118 436 aa9.92□□□□□ -0.82
CLK3-208ENST00000562626 PTPRRQ15256 657 aa9.92□□□□□ -0.82
CLK3-208ENST00000562626 MYLK3Q32MK0 819 aa9.92□□□□□ -0.82
CLK3-208ENST00000562626 SEL1L2Q5TEA6 688 aa9.92□□□□□ -0.82
CLK3-208ENST00000562626 PARS2Q7L3T8 475 aaKnown RBP9.92□□□□□ -0.82
CLK3-208ENST00000562626 SRLQ86TD4 932 aa9.92□□□□□ -0.82
CLK3-208ENST00000562626 PRUNE1Q86TP1 453 aa9.92□□□□□ -0.82
CLK3-208ENST00000562626 LONP2Q86WA8 852 aa9.92□□□□□ -0.82
CLK3-208ENST00000562626 CAMK1DQ8IU85 385 aa9.92□□□□□ -0.82
CLK3-208ENST00000562626 DEFB119Q8N690 84 aa9.92□□□□□ -0.82
CLK3-208ENST00000562626 SLC35B2Q8TB61 432 aa9.92□□□□□ -0.82
CLK3-208ENST00000562626 ARRDC2Q8TBH0 407 aa9.92□□□□□ -0.82
CLK3-208ENST00000562626 C1orf54Q8WWF1 131 aa9.92□□□□□ -0.82
CLK3-208ENST00000562626 CASKIN2Q8WXE0 1202 aa9.92□□□□□ -0.82
CLK3-208ENST00000562626 OR8D1Q8WZ84 308 aa9.92□□□□□ -0.82
CLK3-208ENST00000562626 PRCCQ92733 491 aaPredicted RBP9.92□□□□□ -0.82
CLK3-208ENST00000562626 P3H4Q92791 437 aa9.92□□□□□ -0.82
CLK3-208ENST00000562626 FAM131CQ96AQ9 280 aa9.92□□□□□ -0.82
CLK3-208ENST00000562626 GDAP1L1Q96MZ0 367 aa9.92□□□□□ -0.82
CLK3-208ENST00000562626 OSBPL9Q96SU4 736 aa9.92□□□□□ -0.82
CLK3-208ENST00000562626 MGME1Q9BQP7 344 aa9.92□□□□□ -0.82
CLK3-208ENST00000562626 GORASP1Q9BQQ3 440 aa9.92□□□□□ -0.82
CLK3-208ENST00000562626 HEPHQ9BQS7 1158 aa9.92□□□□□ -0.82
CLK3-208ENST00000562626 CINPQ9BW66 212 aaPredicted RBP9.92□□□□□ -0.82
CLK3-208ENST00000562626 NOD2Q9HC29 1040 aa9.92□□□□□ -0.82
CLK3-208ENST00000562626 ITM2CQ9NQX7 267 aa9.92□□□□□ -0.82
CLK3-208ENST00000562626 RBM22Q9NW64 420 aaKnown RBP eCLIP9.92□□□□□ -0.82
CLK3-208ENST00000562626 ZSCAN32Q9NX65 697 aa9.92□□□□□ -0.82
CLK3-208ENST00000562626 SEPT10Q9P0V9 454 aa9.92□□□□□ -0.82
CLK3-208ENST00000562626 SEPT3Q9UH03 358 aa9.92□□□□□ -0.82
CLK3-208ENST00000562626 IL36AQ9UHA7 158 aa9.92□□□□□ -0.82
CLK3-208ENST00000562626 GGT7Q9UJ14 662 aa9.92□□□□□ -0.82
CLK3-208ENST00000562626 DNPEPQ9ULA0 475 aa9.92□□□□□ -0.82
CLK3-208ENST00000562626 ATP8A1Q9Y2Q0 1164 aa9.92□□□□□ -0.82
CLK3-208ENST00000562626 JRKLQ9Y4A0 524 aa9.92□□□□□ -0.82
CLK3-208ENST00000562626 SLCO1B1Q9Y6L6 691 aa9.92□□□□□ -0.82
CLK3-208ENST00000562626 CACNA1EQ15878 2313 aa9.91□□□□□ -0.82
CLK3-208ENST00000562626 GOLGA6L9A6NEM1 432 aa9.91□□□□□ -0.82
CLK3-208ENST00000562626 C10orf142B7Z368 130 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms