RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 EDF1O60869 148 aaKnown RBP7.61□□□□□ -1.19
VPS39-204ENST00000561818 AVILO75366 819 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 C1QAP02745 245 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 HLA-DQB2P05538 268 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 HSPA8P11142 646 aaKnown RBP7.61□□□□□ -1.19
VPS39-204ENST00000561818 HDCP19113 662 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 IGFBP6P24592 240 aaPredicted RBP7.61□□□□□ -1.19
VPS39-204ENST00000561818 WEE1P30291 646 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 CD68P34810 354 aaPredicted RBP7.61□□□□□ -1.19
VPS39-204ENST00000561818 RPA3P35244 121 aaPredicted RBP7.61□□□□□ -1.19
VPS39-204ENST00000561818 MAGEA12P43365 314 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 CD151P48509 253 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 SERPINB4P48594 390 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 CSNK1DP48730 415 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 MNAT1P51948 309 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 PTPN5P54829 565 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 CORO7P57737 925 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 ITKQ08881 620 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 SLC1A5Q15758 541 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 CRY1Q16526 586 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 PREPLQ4J6C6 727 aaPredicted RBP7.61□□□□□ -1.19
VPS39-204ENST00000561818 LACTB2Q53H82 288 aaPredicted RBP7.61□□□□□ -1.19
VPS39-204ENST00000561818 PPM1LQ5SGD2 360 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 RASIP1Q5U651 963 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 LYPLAL1Q5VWZ2 237 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 HTR3DQ70Z44 454 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 TMC7Q7Z402 723 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 STRA8Q7Z7C7 330 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 CRLF3Q8IUI8 442 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 CYP4X1Q8N118 509 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 C4orf33Q8N1A6 199 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 STK40Q8N2I9 435 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 CHCHD4Q8N4Q1 142 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 CNTD1Q8N815 330 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 TTC8Q8TAM2 541 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 MDM1Q8TC05 714 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 MGARPQ8TDB4 240 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 BRSK1Q8TDC3 778 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 GIPC2Q8TF65 315 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 PTPRN2Q92932 1015 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 LRRC37BQ96QE4 947 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 NUDCD1Q96RS6 583 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 GPR22Q99680 433 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 LBHD1Q9BQE6 289 aaPredicted RBP7.61□□□□□ -1.19
VPS39-204ENST00000561818 MLPHQ9BV36 600 aaPredicted RBP7.61□□□□□ -1.19
VPS39-204ENST00000561818 FICDQ9BVA6 458 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 TSSK1BQ9BXA7 367 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 ACE2Q9BYF1 805 aaPredicted RBP7.61□□□□□ -1.19
VPS39-204ENST00000561818 WWP1Q9H0M0 922 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 LMAN2LQ9H0V9 348 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 MFSD1Q9H3U5 465 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 CCSER2Q9H7U1 834 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 TLR9Q9NR96 1032 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 INTS10Q9NVR2 710 aaKnown RBP7.61□□□□□ -1.19
VPS39-204ENST00000561818 KIAA1522Q9P206 1035 aaPredicted RBP7.61□□□□□ -1.19
VPS39-204ENST00000561818 ZNF212Q9UDV6 495 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 PHTF1Q9UMS5 762 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 ARHGAP26Q9UNA1 814 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 COLQQ9Y215 455 aaPredicted RBP7.61□□□□□ -1.19
VPS39-204ENST00000561818 RRP15Q9Y3B9 282 aaKnown RBP7.61□□□□□ -1.19
VPS39-204ENST00000561818 GREB1Q4ZG55 1949 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP7.6□□□□□ -1.19
VPS39-204ENST00000561818 CCT8L1PA6NM43 557 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 H0Y626 953 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 H0YHG0 523 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 C2CD2LO14523 706 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 TRAFD1O14545 582 aaPredicted RBP7.6□□□□□ -1.19
VPS39-204ENST00000561818 TEX28O15482 410 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 INSIG1O15503 277 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 ATP9BO43861 1147 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 TLL1O43897 1013 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 CCDC22O60826 627 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 LILRB3O75022 631 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 RFPL1O75677 317 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 FSBPO95073 299 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 VNN2O95498 520 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 PENKP01210 267 aaPredicted RBP7.6□□□□□ -1.19
VPS39-204ENST00000561818 F11P03951 625 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 SERPINE1P05121 402 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 CKMP06732 381 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 C8AP07357 584 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 STMN1P16949 149 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 TAC1P20366 129 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 BMPR1AP36894 532 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 AVPR1AP37288 418 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 ETV4P43268 484 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 MAGEA9P43362 315 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 GRIA4P48058 902 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 GPR15P49685 360 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 GATMP50440 423 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 SEC24CP53992 1094 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 EPHA5P54756 1037 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 SMAD3P84022 425 aaKnown RBP7.6□□□□□ -1.19
VPS39-204ENST00000561818 ACVR1Q04771 509 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 RAD51Q06609 339 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 FAM83EQ2M2I3 478 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 FAM133BQ5BKY9 247 aaKnown RBP7.6□□□□□ -1.19
VPS39-204ENST00000561818 HP1BP3Q5SSJ5 553 aaPredicted RBP7.6□□□□□ -1.19
VPS39-204ENST00000561818 TSTD2Q5T7W7 516 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 TEDDM1Q5T9Z0 273 aa7.6□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms