RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 ACBD5Q5T8D3 534 aaPredicted RBP11.85□□□□□ -0.51
USP3-220ENST00000561381 MANEALQ5VSG8 457 aa11.85□□□□□ -0.51
USP3-220ENST00000561381 RWDD4Q6NW29 188 aaKnown RBP11.85□□□□□ -0.51
USP3-220ENST00000561381 LEKR1Q6ZMV7 388 aa11.85□□□□□ -0.51
USP3-220ENST00000561381 ARCQ7LC44 396 aa11.85□□□□□ -0.51
USP3-220ENST00000561381 TMC6Q7Z403 805 aa11.85□□□□□ -0.51
USP3-220ENST00000561381 PTAR1Q7Z6K3 402 aaPredicted RBP11.85□□□□□ -0.51
USP3-220ENST00000561381 NLRP14Q86W24 1093 aa11.85□□□□□ -0.51
USP3-220ENST00000561381 PCDH20Q8N6Y1 951 aaKnown RBP11.85□□□□□ -0.51
USP3-220ENST00000561381 MSANTD4Q8NCY6 345 aa11.85□□□□□ -0.51
USP3-220ENST00000561381 RFFLQ8WZ73 363 aa11.85□□□□□ -0.51
USP3-220ENST00000561381 VOPP1Q96AW1 172 aa11.85□□□□□ -0.51
USP3-220ENST00000561381 PPP1R16AQ96I34 528 aa11.85□□□□□ -0.51
USP3-220ENST00000561381 HEPHQ9BQS7 1158 aa11.85□□□□□ -0.51
USP3-220ENST00000561381 C11orf70Q9BRQ4 267 aa11.85□□□□□ -0.51
USP3-220ENST00000561381 SLC17A9Q9BYT1 436 aa11.85□□□□□ -0.51
USP3-220ENST00000561381 NRSN2Q9GZP1 204 aa11.85□□□□□ -0.51
USP3-220ENST00000561381 ZDHHC6Q9H6R6 413 aa11.85□□□□□ -0.51
USP3-220ENST00000561381 NLRC4Q9NPP4 1024 aa11.85□□□□□ -0.51
USP3-220ENST00000561381 FAM207AQ9NSI2 230 aaPredicted RBP11.85□□□□□ -0.51
USP3-220ENST00000561381 DNAJC28Q9NX36 388 aa11.85□□□□□ -0.51
USP3-220ENST00000561381 OR12D3Q9UGF7 316 aa11.85□□□□□ -0.51
USP3-220ENST00000561381 DNAI1Q9UI46 699 aa11.85□□□□□ -0.51
USP3-220ENST00000561381 GGT7Q9UJ14 662 aa11.85□□□□□ -0.51
USP3-220ENST00000561381 CLCA2Q9UQC9 943 aa11.85□□□□□ -0.51
USP3-220ENST00000561381 ITM2BQ9Y287 266 aa11.85□□□□□ -0.51
USP3-220ENST00000561381 FADS3Q9Y5Q0 445 aa11.85□□□□□ -0.51
USP3-220ENST00000561381 LY6G6EA0A0G2JKS1 128 aa11.84□□□□□ -0.51
USP3-220ENST00000561381 C2CD4BA6NLJ0 364 aa11.84□□□□□ -0.51
USP3-220ENST00000561381 A6NNZ2 444 aa11.84□□□□□ -0.51
USP3-220ENST00000561381 BRINP1O60477 761 aa11.84□□□□□ -0.51
USP3-220ENST00000561381 NEBLO76041 1014 aa11.84□□□□□ -0.51
USP3-220ENST00000561381 LRIG2O94898 1065 aa11.84□□□□□ -0.51
USP3-220ENST00000561381 EEF1GP26641 437 aaKnown RBP11.84□□□□□ -0.51
USP3-220ENST00000561381 SOX5P35711 763 aa11.84□□□□□ -0.51
USP3-220ENST00000561381 EIF2S3P41091 472 aaKnown RBP11.84□□□□□ -0.51
USP3-220ENST00000561381 ABL2P42684 1182 aa11.84□□□□□ -0.51
USP3-220ENST00000561381 ABCG1P45844 678 aa11.84□□□□□ -0.51
USP3-220ENST00000561381 JAM2P57087 298 aa11.84□□□□□ -0.51
USP3-220ENST00000561381 RPS21P63220 83 aaKnown RBP11.84□□□□□ -0.51
USP3-220ENST00000561381 DAB2P98082 770 aa11.84□□□□□ -0.51
USP3-220ENST00000561381 SLC20A2Q08357 652 aa11.84□□□□□ -0.51
USP3-220ENST00000561381 PTP4A2Q12974 167 aa11.84□□□□□ -0.51
USP3-220ENST00000561381 FZD2Q14332 565 aa11.84□□□□□ -0.51
USP3-220ENST00000561381 KRT31Q15323 416 aa11.84□□□□□ -0.51
USP3-220ENST00000561381 TPRG1LQ5T0D9 272 aa11.84□□□□□ -0.51
USP3-220ENST00000561381 RYBPQ8N488 228 aaPredicted RBP11.84□□□□□ -0.51
USP3-220ENST00000561381 CCDC185Q8N715 623 aa11.84□□□□□ -0.51
USP3-220ENST00000561381 DCBLD1Q8N8Z6 715 aa11.84□□□□□ -0.51
USP3-220ENST00000561381 NETO2Q8NC67 525 aa11.84□□□□□ -0.51
USP3-220ENST00000561381 ARHGEF2Q92974 986 aaKnown RBP11.84□□□□□ -0.51
USP3-220ENST00000561381 PCDHB18PQ96TA0 734 aa11.84□□□□□ -0.51
USP3-220ENST00000561381 GPR27Q9NS67 375 aa11.84□□□□□ -0.51
USP3-220ENST00000561381 TMEM51Q9NW97 253 aa11.84□□□□□ -0.51
USP3-220ENST00000561381 HECAQ9UBI9 543 aaPredicted RBP11.84□□□□□ -0.51
USP3-220ENST00000561381 KLF15Q9UIH9 416 aa11.84□□□□□ -0.51
USP3-220ENST00000561381 U3KQA8 63 aa11.84□□□□□ -0.51
USP3-220ENST00000561381 CHD5Q8TDI0 1954 aa11.84□□□□□ -0.51
USP3-220ENST00000561381 IGLON5A6NGN9 336 aa11.83□□□□□ -0.52
USP3-220ENST00000561381 SPINT1O43278 529 aa11.83□□□□□ -0.52
USP3-220ENST00000561381 MT-CO3P00414 261 aa11.83□□□□□ -0.52
USP3-220ENST00000561381 PLEKP08567 350 aaPredicted RBP11.83□□□□□ -0.52
USP3-220ENST00000561381 CKMT1AP12532 417 aa11.83□□□□□ -0.52
USP3-220ENST00000561381 RHOQP17081 205 aa11.83□□□□□ -0.52
USP3-220ENST00000561381 SDC4P31431 198 aa11.83□□□□□ -0.52
USP3-220ENST00000561381 HDAC4P56524 1084 aa11.83□□□□□ -0.52
USP3-220ENST00000561381 NRG1Q02297 640 aaPredicted RBP11.83□□□□□ -0.52
USP3-220ENST00000561381 LRRC73Q5JTD7 316 aa11.83□□□□□ -0.52
USP3-220ENST00000561381 CDKAL1Q5VV42 579 aa11.83□□□□□ -0.52
USP3-220ENST00000561381 KIAA1161Q6NSJ0 714 aa11.83□□□□□ -0.52
USP3-220ENST00000561381 KYAT3Q6YP21 454 aaKnown RBP11.83□□□□□ -0.52
USP3-220ENST00000561381 ZNF677Q86XU0 584 aa11.83□□□□□ -0.52
USP3-220ENST00000561381 PYROXD2Q8N2H3 581 aa11.83□□□□□ -0.52
USP3-220ENST00000561381 ENOX1Q8TC92 643 aaKnown RBP11.83□□□□□ -0.52
USP3-220ENST00000561381 FEM1CQ96JP0 617 aa11.83□□□□□ -0.52
USP3-220ENST00000561381 APOLD1Q96LR9 279 aa11.83□□□□□ -0.52
USP3-220ENST00000561381 KLF6Q99612 283 aaPredicted RBP11.83□□□□□ -0.52
USP3-220ENST00000561381 OSBPL2Q9H1P3 480 aa11.83□□□□□ -0.52
USP3-220ENST00000561381 TMEM248Q9NWD8 314 aa11.83□□□□□ -0.52
USP3-220ENST00000561381 PCDHB1Q9Y5F3 818 aa11.83□□□□□ -0.52
USP3-220ENST00000561381 RAI2Q9Y5P3 530 aa11.83□□□□□ -0.52
USP3-220ENST00000561381 HS3ST3A1Q9Y663 406 aa11.83□□□□□ -0.52
USP3-220ENST00000561381 C16orf96A6NNT2 1141 aa11.82□□□□□ -0.52
USP3-220ENST00000561381 K7ESM1 405 aa11.82□□□□□ -0.52
USP3-220ENST00000561381 KRIT1O00522 736 aa11.82□□□□□ -0.52
USP3-220ENST00000561381 SCAMP1O15126 338 aa11.82□□□□□ -0.52
USP3-220ENST00000561381 AP1G1O43747 822 aa11.82□□□□□ -0.52
USP3-220ENST00000561381 OPA1O60313 960 aa11.82□□□□□ -0.52
USP3-220ENST00000561381 UGT2B4P06133 528 aa11.82□□□□□ -0.52
USP3-220ENST00000561381 UNGP13051 313 aaPredicted RBP11.82□□□□□ -0.52
USP3-220ENST00000561381 RFC1P35251 1148 aaPredicted RBP11.82□□□□□ -0.52
USP3-220ENST00000561381 MAPKAPK2P49137 400 aa11.82□□□□□ -0.52
USP3-220ENST00000561381 E2F1Q01094 437 aa11.82□□□□□ -0.52
USP3-220ENST00000561381 ARL13BQ3SXY8 428 aa11.82□□□□□ -0.52
USP3-220ENST00000561381 HS1BP3Q53T59 392 aa11.82□□□□□ -0.52
USP3-220ENST00000561381 ZNF805Q5CZA5 627 aa11.82□□□□□ -0.52
USP3-220ENST00000561381 CT47A1Q5JQC4 288 aaPredicted RBP11.82□□□□□ -0.52
USP3-220ENST00000561381 ATXN7L2Q5T6C5 722 aaPredicted RBP11.82□□□□□ -0.52
USP3-220ENST00000561381 STRADAQ7RTN6 431 aa11.82□□□□□ -0.52
USP3-220ENST00000561381 CACTIN-AS1Q8N1I8 211 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms