RNA–Protein interactions for RNA: ENST00000559061.5

SNX1-204, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 550 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-204ENST00000559061 MAXP61244 160 aa11.6□□□□□ -0.55
SNX1-204ENST00000559061 RHOAP61586 193 aa11.6□□□□□ -0.55
SNX1-204ENST00000559061 PPP2CBP62714 309 aa11.6□□□□□ -0.55
SNX1-204ENST00000559061 PPP2CAP67775 309 aa11.6□□□□□ -0.55
SNX1-204ENST00000559061 CCDC173Q0VFZ6 552 aa11.6□□□□□ -0.55
SNX1-204ENST00000559061 LBRQ14739 615 aaKnown RBP11.6□□□□□ -0.55
SNX1-204ENST00000559061 MYLK3Q32MK0 819 aa11.6□□□□□ -0.55
SNX1-204ENST00000559061 USP39Q53GS9 565 aaKnown RBP11.6□□□□□ -0.55
SNX1-204ENST00000559061 ZFYVE27Q5T4F4 411 aa11.6□□□□□ -0.55
SNX1-204ENST00000559061 ALG1LQ6GMV1 187 aa11.6□□□□□ -0.55
SNX1-204ENST00000559061 ZC3H14Q6PJT7 736 aaKnown RBP11.6□□□□□ -0.55
SNX1-204ENST00000559061 USP30Q70CQ3 517 aa11.6□□□□□ -0.55
SNX1-204ENST00000559061 TMEFF1Q8IYR6 380 aa11.6□□□□□ -0.55
SNX1-204ENST00000559061 TMIEQ8NEW7 156 aa11.6□□□□□ -0.55
SNX1-204ENST00000559061 HAUS1Q96CS2 278 aa11.6□□□□□ -0.55
SNX1-204ENST00000559061 RBM41Q96IZ5 413 aaKnown RBP11.6□□□□□ -0.55
SNX1-204ENST00000559061 ZNF599Q96NL3 588 aa11.6□□□□□ -0.55
SNX1-204ENST00000559061 FAM118BQ9BPY3 351 aa11.6□□□□□ -0.55
SNX1-204ENST00000559061 HEPHQ9BQS7 1158 aa11.6□□□□□ -0.55
SNX1-204ENST00000559061 OSBPL8Q9BZF1 889 aa11.6□□□□□ -0.55
SNX1-204ENST00000559061 IRF2BPLQ9H1B7 796 aa11.6□□□□□ -0.55
SNX1-204ENST00000559061 ZDHHC6Q9H6R6 413 aa11.6□□□□□ -0.55
SNX1-204ENST00000559061 C10orf88Q9H8K7 445 aa11.6□□□□□ -0.55
SNX1-204ENST00000559061 EBF2Q9HAK2 575 aa11.6□□□□□ -0.55
SNX1-204ENST00000559061 PARD6AQ9NPB6 346 aa11.6□□□□□ -0.55
SNX1-204ENST00000559061 FBXL12Q9NXK8 326 aa11.6□□□□□ -0.55
SNX1-204ENST00000559061 DONSONQ9NYP3 566 aa11.6□□□□□ -0.55
SNX1-204ENST00000559061 R3HDM2Q9Y2K5 976 aaKnown RBP11.6□□□□□ -0.55
SNX1-204ENST00000559061 HEY1Q9Y5J3 304 aa11.6□□□□□ -0.55
SNX1-204ENST00000559061 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.6□□□□□ -0.55
SNX1-204ENST00000559061 TSPAN11A1L157 253 aa11.59□□□□□ -0.55
SNX1-204ENST00000559061 TRAFD1O14545 582 aaPredicted RBP11.59□□□□□ -0.55
SNX1-204ENST00000559061 ZNF217O75362 1048 aa11.59□□□□□ -0.55
SNX1-204ENST00000559061 EPN2O95208 641 aa11.59□□□□□ -0.55
SNX1-204ENST00000559061 ADH1BP00325 375 aa11.59□□□□□ -0.55
SNX1-204ENST00000559061 DNTTP04053 509 aa11.59□□□□□ -0.55
SNX1-204ENST00000559061 UGT2B4P06133 528 aa11.59□□□□□ -0.55
SNX1-204ENST00000559061 IGHV4-34P06331 123 aa11.59□□□□□ -0.55
SNX1-204ENST00000559061 MMP2P08253 660 aa11.59□□□□□ -0.55
SNX1-204ENST00000559061 ITIH2P19823 946 aa11.59□□□□□ -0.55
SNX1-204ENST00000559061 CCNCP24863 283 aa11.59□□□□□ -0.55
SNX1-204ENST00000559061 ITGB7P26010 798 aa11.59□□□□□ -0.55
SNX1-204ENST00000559061 PLA2G5P39877 138 aa11.59□□□□□ -0.55
SNX1-204ENST00000559061 CSNK1DP48730 415 aa11.59□□□□□ -0.55
SNX1-204ENST00000559061 DNA2P51530 1060 aa11.59□□□□□ -0.55
SNX1-204ENST00000559061 COPS2P61201 443 aa11.59□□□□□ -0.55
SNX1-204ENST00000559061 IFI35P80217 286 aaPredicted RBP11.59□□□□□ -0.55
SNX1-204ENST00000559061 NIPAL4Q0D2K0 466 aa11.59□□□□□ -0.55
SNX1-204ENST00000559061 RFTN1Q14699 578 aaPredicted RBP11.59□□□□□ -0.55
SNX1-204ENST00000559061 SIX1Q15475 284 aaPredicted RBP11.59□□□□□ -0.55
SNX1-204ENST00000559061 IFI16Q16666 785 aaKnown RBP11.59□□□□□ -0.55
SNX1-204ENST00000559061 PEAR1Q5VY43 1037 aaPredicted RBP11.59□□□□□ -0.55
SNX1-204ENST00000559061 PRR23BQ6ZRT6 265 aa11.59□□□□□ -0.55
SNX1-204ENST00000559061 ARMCX6Q7L4S7 300 aa11.59□□□□□ -0.55
SNX1-204ENST00000559061 SYCE1Q8N0S2 351 aa11.59□□□□□ -0.55
SNX1-204ENST00000559061 TXLNBQ8N3L3 684 aa11.59□□□□□ -0.55
SNX1-204ENST00000559061 HDDC3Q8N4P3 179 aa11.59□□□□□ -0.55
SNX1-204ENST00000559061 DCLK2Q8N568 766 aa11.59□□□□□ -0.55
SNX1-204ENST00000559061 C1orf216Q8TAB5 229 aa11.59□□□□□ -0.55
SNX1-204ENST00000559061 ARRDC2Q8TBH0 407 aa11.59□□□□□ -0.55
SNX1-204ENST00000559061 ECHDC3Q96DC8 303 aa11.59□□□□□ -0.55
SNX1-204ENST00000559061 GDAP1L1Q96MZ0 367 aa11.59□□□□□ -0.55
SNX1-204ENST00000559061 IL12RB2Q99665 862 aa11.59□□□□□ -0.55
SNX1-204ENST00000559061 GPR174Q9BXC1 333 aa11.59□□□□□ -0.55
SNX1-204ENST00000559061 CEP41Q9BYV8 373 aa11.59□□□□□ -0.55
SNX1-204ENST00000559061 TMEM74BQ9NUR3 256 aa11.59□□□□□ -0.55
SNX1-204ENST00000559061 TRMT1Q9NXH9 659 aaKnown RBP11.59□□□□□ -0.55
SNX1-204ENST00000559061 GGT7Q9UJ14 662 aa11.59□□□□□ -0.55
SNX1-204ENST00000559061 FZD4Q9ULV1 537 aa11.59□□□□□ -0.55
SNX1-204ENST00000559061 DNAH14Q0VDD8 3507 aa11.59□□□□□ -0.55
SNX1-204ENST00000559061 ATXN2Q99700 1313 aaKnown RBP11.59□□□□□ -0.55
SNX1-204ENST00000559061 MIF4GDA9UHW6 222 aaKnown RBP11.58□□□□□ -0.56
SNX1-204ENST00000559061 KCNK1O00180 336 aa11.58□□□□□ -0.56
SNX1-204ENST00000559061 KRIT1O00522 736 aa11.58□□□□□ -0.56
SNX1-204ENST00000559061 MATN3O15232 486 aa11.58□□□□□ -0.56
SNX1-204ENST00000559061 PLRG1O43660 514 aaKnown RBP11.58□□□□□ -0.56
SNX1-204ENST00000559061 RNASEH2AO75792 299 aaKnown RBP11.58□□□□□ -0.56
SNX1-204ENST00000559061 IGSF6O95976 241 aa11.58□□□□□ -0.56
SNX1-204ENST00000559061 LMNAP02545 664 aaKnown RBP11.58□□□□□ -0.56
SNX1-204ENST00000559061 PRNPP04156 253 aa11.58□□□□□ -0.56
SNX1-204ENST00000559061 PTMAP06454 111 aaKnown RBP11.58□□□□□ -0.56
SNX1-204ENST00000559061 TGM2P21980 687 aa11.58□□□□□ -0.56
SNX1-204ENST00000559061 MMP13P45452 471 aa11.58□□□□□ -0.56
SNX1-204ENST00000559061 SNRPD1P62314 119 aaKnown RBP11.58□□□□□ -0.56
SNX1-204ENST00000559061 RPL6Q02878 288 aaKnown RBP11.58□□□□□ -0.56
SNX1-204ENST00000559061 WASHC5Q12768 1159 aa11.58□□□□□ -0.56
SNX1-204ENST00000559061 TRAF2Q12933 501 aa11.58□□□□□ -0.56
SNX1-204ENST00000559061 HNRNPDQ14103 355 aaKnown RBP11.58□□□□□ -0.56
SNX1-204ENST00000559061 NOMO1Q15155 1222 aa11.58□□□□□ -0.56
SNX1-204ENST00000559061 CCDC6Q16204 474 aa11.58□□□□□ -0.56
SNX1-204ENST00000559061 LRRC73Q5JTD7 316 aa11.58□□□□□ -0.56
SNX1-204ENST00000559061 PLA2G2CQ5R387 149 aa11.58□□□□□ -0.56
SNX1-204ENST00000559061 NCEH1Q6PIU2 408 aa11.58□□□□□ -0.56
SNX1-204ENST00000559061 CEP68Q76N32 757 aa11.58□□□□□ -0.56
SNX1-204ENST00000559061 SRLQ86TD4 932 aa11.58□□□□□ -0.56
SNX1-204ENST00000559061 CAMK1DQ8IU85 385 aa11.58□□□□□ -0.56
SNX1-204ENST00000559061 LRRC49Q8IUZ0 686 aa11.58□□□□□ -0.56
SNX1-204ENST00000559061 CCDC50Q8IVM0 306 aa11.58□□□□□ -0.56
SNX1-204ENST00000559061 CCDC13Q8IYE1 715 aa11.58□□□□□ -0.56
SNX1-204ENST00000559061 C17orf53Q8N3J3 647 aaPredicted RBP11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms