RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 FATE1Q969F0 183 aa14.25□□□□□ -0.13
VIPAS39-208ENST00000556412 MAGOHBQ96A72 148 aaKnown RBP14.25□□□□□ -0.13
VIPAS39-208ENST00000556412 POLR1EQ9GZS1 481 aaKnown RBP14.25□□□□□ -0.13
VIPAS39-208ENST00000556412 MKRN2Q9H000 416 aaKnown RBP14.25□□□□□ -0.13
VIPAS39-208ENST00000556412 SCUBE2Q9NQ36 999 aa14.25□□□□□ -0.13
VIPAS39-208ENST00000556412 HOMER3Q9NSC5 361 aa14.25□□□□□ -0.13
VIPAS39-208ENST00000556412 IL36AQ9UHA7 158 aa14.25□□□□□ -0.13
VIPAS39-208ENST00000556412 F5P12259 2224 aa14.24□□□□□ -0.13
VIPAS39-208ENST00000556412 INSIG1O15503 277 aa14.24□□□□□ -0.13
VIPAS39-208ENST00000556412 IFNB1P01574 187 aa14.24□□□□□ -0.13
VIPAS39-208ENST00000556412 NDUFV2P19404 249 aa14.24□□□□□ -0.13
VIPAS39-208ENST00000556412 HSPA9P38646 679 aaKnown RBP14.24□□□□□ -0.13
VIPAS39-208ENST00000556412 KCNJ1P48048 391 aa14.24□□□□□ -0.13
VIPAS39-208ENST00000556412 RAD51Q06609 339 aa14.24□□□□□ -0.13
VIPAS39-208ENST00000556412 TEX44Q53QW1 395 aa14.24□□□□□ -0.13
VIPAS39-208ENST00000556412 ARSIQ5FYB1 569 aa14.24□□□□□ -0.13
VIPAS39-208ENST00000556412 PID1Q7Z2X4 250 aa14.24□□□□□ -0.13
VIPAS39-208ENST00000556412 TMPRSS6Q8IU80 811 aa14.24□□□□□ -0.13
VIPAS39-208ENST00000556412 C1orf210Q8IVY1 113 aa14.24□□□□□ -0.13
VIPAS39-208ENST00000556412 CNTD1Q8N815 330 aa14.24□□□□□ -0.13
VIPAS39-208ENST00000556412 NKD2Q969F2 451 aaPredicted RBP14.24□□□□□ -0.13
VIPAS39-208ENST00000556412 IL12RB2Q99665 862 aa14.24□□□□□ -0.13
VIPAS39-208ENST00000556412 SEMA3CQ99985 751 aa14.24□□□□□ -0.13
VIPAS39-208ENST00000556412 MGME1Q9BQP7 344 aa14.24□□□□□ -0.13
VIPAS39-208ENST00000556412 HEPHQ9BQS7 1158 aa14.24□□□□□ -0.13
VIPAS39-208ENST00000556412 TECTAO75443 2155 aa14.23□□□□□ -0.13
VIPAS39-208ENST00000556412 PDE2AO00408 941 aaPredicted RBP14.23□□□□□ -0.13
VIPAS39-208ENST00000556412 KPNA3O00505 521 aaPredicted RBP14.23□□□□□ -0.13
VIPAS39-208ENST00000556412 LEFTY1O75610 366 aa14.23□□□□□ -0.13
VIPAS39-208ENST00000556412 APBB3O95704 486 aa14.23□□□□□ -0.13
VIPAS39-208ENST00000556412 POP4O95707 220 aaKnown RBP14.23□□□□□ -0.13
VIPAS39-208ENST00000556412 GABRG2P18507 467 aa14.23□□□□□ -0.13
VIPAS39-208ENST00000556412 COPAP53621 1224 aa14.23□□□□□ -0.13
VIPAS39-208ENST00000556412 GDF10P55107 478 aa14.23□□□□□ -0.13
VIPAS39-208ENST00000556412 DSC2Q02487 901 aa14.23□□□□□ -0.13
VIPAS39-208ENST00000556412 CSTF1Q05048 431 aaKnown RBP14.23□□□□□ -0.13
VIPAS39-208ENST00000556412 OASLQ15646 514 aaKnown RBP14.23□□□□□ -0.13
VIPAS39-208ENST00000556412 KCTD19Q17RG1 926 aaPredicted RBP14.23□□□□□ -0.13
VIPAS39-208ENST00000556412 DNTTIP2Q5QJE6 756 aaKnown RBP14.23□□□□□ -0.13
VIPAS39-208ENST00000556412 ZNF776Q68DI1 518 aaPredicted RBP14.23□□□□□ -0.13
VIPAS39-208ENST00000556412 SRLQ86TD4 932 aa14.23□□□□□ -0.13
VIPAS39-208ENST00000556412 ZNF567Q8N184 647 aa14.23□□□□□ -0.13
VIPAS39-208ENST00000556412 MDGA1Q8NFP4 955 aa14.23□□□□□ -0.13
VIPAS39-208ENST00000556412 CCDC110Q8TBZ0 833 aa14.23□□□□□ -0.13
VIPAS39-208ENST00000556412 GANCQ8TET4 914 aa14.23□□□□□ -0.13
VIPAS39-208ENST00000556412 PRCCQ92733 491 aaPredicted RBP14.23□□□□□ -0.13
VIPAS39-208ENST00000556412 SIPA1Q96FS4 1042 aa14.23□□□□□ -0.13
VIPAS39-208ENST00000556412 FAM129BQ96TA1 746 aa14.23□□□□□ -0.13
VIPAS39-208ENST00000556412 TPSD1Q9BZJ3 242 aa14.23□□□□□ -0.13
VIPAS39-208ENST00000556412 NOD2Q9HC29 1040 aa14.23□□□□□ -0.13
VIPAS39-208ENST00000556412 RNF14Q9UBS8 474 aa14.23□□□□□ -0.13
VIPAS39-208ENST00000556412 CFAP69A5D8W1 941 aa14.22□□□□□ -0.13
VIPAS39-208ENST00000556412 C1QTNF3-AMACRE9PGA6 284 aa14.22□□□□□ -0.13
VIPAS39-208ENST00000556412 PIGNO95427 931 aa14.22□□□□□ -0.13
VIPAS39-208ENST00000556412 DNTTP04053 509 aa14.22□□□□□ -0.13
VIPAS39-208ENST00000556412 PRNPP04156 253 aa14.22□□□□□ -0.13
VIPAS39-208ENST00000556412 UGT2B4P06133 528 aa14.22□□□□□ -0.13
VIPAS39-208ENST00000556412 CTSLP07711 333 aa14.22□□□□□ -0.13
VIPAS39-208ENST00000556412 ACADMP11310 421 aa14.22□□□□□ -0.13
VIPAS39-208ENST00000556412 RPS14P62263 151 aaKnown RBP14.22□□□□□ -0.13
VIPAS39-208ENST00000556412 CFAP58Q5T655 872 aa14.22□□□□□ -0.13
VIPAS39-208ENST00000556412 TAB3Q8N5C8 712 aaPredicted RBP14.22□□□□□ -0.13
VIPAS39-208ENST00000556412 CCDC89Q8N998 374 aa14.22□□□□□ -0.13
VIPAS39-208ENST00000556412 PIP4K2CQ8TBX8 421 aa14.22□□□□□ -0.13
VIPAS39-208ENST00000556412 MRGPRX1Q96LB2 322 aa14.22□□□□□ -0.13
VIPAS39-208ENST00000556412 TEKT5Q96M29 485 aa14.22□□□□□ -0.13
VIPAS39-208ENST00000556412 NUDCD1Q96RS6 583 aa14.22□□□□□ -0.13
VIPAS39-208ENST00000556412 VAT1Q99536 393 aa14.22□□□□□ -0.13
VIPAS39-208ENST00000556412 RSPH9Q9H1X1 276 aaPredicted RBP14.22□□□□□ -0.13
VIPAS39-208ENST00000556412 FBRSQ9HAH7 460 aa14.22□□□□□ -0.13
VIPAS39-208ENST00000556412 USP29Q9HBJ7 922 aa14.22□□□□□ -0.13
VIPAS39-208ENST00000556412 CD248Q9HCU0 757 aa14.22□□□□□ -0.13
VIPAS39-208ENST00000556412 RSPH14Q9UHP6 348 aa14.22□□□□□ -0.13
VIPAS39-208ENST00000556412 SARDHQ9UL12 918 aa14.22□□□□□ -0.13
VIPAS39-208ENST00000556412 WASF2Q9Y6W5 498 aa14.22□□□□□ -0.13
VIPAS39-208ENST00000556412 ALOX15BO15296 676 aa14.22□□□□□ -0.13
VIPAS39-208ENST00000556412 PHF2O75151 1096 aa14.22□□□□□ -0.13
VIPAS39-208ENST00000556412 ITGAVP06756 1048 aa14.22□□□□□ -0.13
VIPAS39-208ENST00000556412 NFKB1P19838 968 aa14.22□□□□□ -0.13
VIPAS39-208ENST00000556412 SLC8A1P32418 973 aa14.22□□□□□ -0.13
VIPAS39-208ENST00000556412 METAP1P53582 386 aa14.22□□□□□ -0.13
VIPAS39-208ENST00000556412 AP1S1P61966 158 aa14.22□□□□□ -0.13
VIPAS39-208ENST00000556412 NSUN2Q08J23 767 aaKnown RBP eCLIP14.22□□□□□ -0.13
VIPAS39-208ENST00000556412 CST6Q15828 149 aa14.22□□□□□ -0.13
VIPAS39-208ENST00000556412 ANKRD20A2Q5SQ80 823 aa14.22□□□□□ -0.13
VIPAS39-208ENST00000556412 ANKRD20A1Q5TYW2 823 aa14.22□□□□□ -0.13
VIPAS39-208ENST00000556412 ANKRD20A3Q5VUR7 823 aa14.22□□□□□ -0.13
VIPAS39-208ENST00000556412 TTC27Q6P3X3 843 aa14.22□□□□□ -0.13
VIPAS39-208ENST00000556412 CCDC137Q6PK04 289 aaKnown RBP14.22□□□□□ -0.13
VIPAS39-208ENST00000556412 ARHGEF18Q6ZSZ5 1173 aa14.22□□□□□ -0.13
VIPAS39-208ENST00000556412 PRUNE1Q86TP1 453 aa14.22□□□□□ -0.13
VIPAS39-208ENST00000556412 KLHL7Q8IXQ5 586 aa14.22□□□□□ -0.13
VIPAS39-208ENST00000556412 PLPP6Q8IY26 295 aa14.22□□□□□ -0.13
VIPAS39-208ENST00000556412 PDCD6IPQ8WUM4 868 aaKnown RBP14.22□□□□□ -0.13
VIPAS39-208ENST00000556412 DDX47Q9H0S4 455 aaKnown RBP14.22□□□□□ -0.13
VIPAS39-208ENST00000556412 ATP13A3Q9H7F0 1226 aa14.22□□□□□ -0.13
VIPAS39-208ENST00000556412 GLOD4Q9HC38 313 aa14.22□□□□□ -0.13
VIPAS39-208ENST00000556412 AMACRQ9UHK6 382 aa14.22□□□□□ -0.13
VIPAS39-208ENST00000556412 CDC23Q9UJX2 597 aa14.22□□□□□ -0.13
VIPAS39-208ENST00000556412 TRHDEQ9UKU6 1024 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms