RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 PRPF39Q86UA1 669 aaKnown RBP10.45□□□□□ -0.74
CCDC88C-206ENST00000553437 ARHGAP12Q8IWW6 846 aa10.45□□□□□ -0.74
CCDC88C-206ENST00000553437 NIPA2Q8N8Q9 360 aa10.45□□□□□ -0.74
CCDC88C-206ENST00000553437 NETO2Q8NC67 525 aa10.45□□□□□ -0.74
CCDC88C-206ENST00000553437 OR2AP1Q8NGE2 309 aa10.45□□□□□ -0.74
CCDC88C-206ENST00000553437 CASKIN2Q8WXE0 1202 aa10.45□□□□□ -0.74
CCDC88C-206ENST00000553437 CELF6Q96J87 481 aaKnown RBP10.45□□□□□ -0.74
CCDC88C-206ENST00000553437 BTBD6Q96KE9 485 aa10.45□□□□□ -0.74
CCDC88C-206ENST00000553437 CAMK1GQ96NX5 476 aa10.45□□□□□ -0.74
CCDC88C-206ENST00000553437 NCAPGQ9BPX3 1015 aa10.45□□□□□ -0.74
CCDC88C-206ENST00000553437 NUP85Q9BW27 656 aa10.45□□□□□ -0.74
CCDC88C-206ENST00000553437 SLC39A8Q9C0K1 460 aa10.45□□□□□ -0.74
CCDC88C-206ENST00000553437 PDFQ9HBH1 243 aa10.45□□□□□ -0.74
CCDC88C-206ENST00000553437 PREBQ9HCU5 417 aa10.45□□□□□ -0.74
CCDC88C-206ENST00000553437 CWC15Q9P013 229 aaKnown RBP10.45□□□□□ -0.74
CCDC88C-206ENST00000553437 CNOT1A5YKK6 2376 aaKnown RBP10.44□□□□□ -0.74
CCDC88C-206ENST00000553437 SSU72P8A0A1W2PR75 194 aa10.44□□□□□ -0.74
CCDC88C-206ENST00000553437 H0Y8X5 98 aa10.44□□□□□ -0.74
CCDC88C-206ENST00000553437 J3KR12 359 aa10.44□□□□□ -0.74
CCDC88C-206ENST00000553437 PRAMEF11O60813 436 aa10.44□□□□□ -0.74
CCDC88C-206ENST00000553437 RNGTTO60942 597 aaKnown RBP10.44□□□□□ -0.74
CCDC88C-206ENST00000553437 CBFA2T3O75081 653 aa10.44□□□□□ -0.74
CCDC88C-206ENST00000553437 POP4O95707 220 aaKnown RBP10.44□□□□□ -0.74
CCDC88C-206ENST00000553437 RARAP10276 462 aa10.44□□□□□ -0.74
CCDC88C-206ENST00000553437 ITGB7P26010 798 aa10.44□□□□□ -0.74
CCDC88C-206ENST00000553437 CD38P28907 300 aa10.44□□□□□ -0.74
CCDC88C-206ENST00000553437 MAT2AP31153 395 aaKnown RBP10.44□□□□□ -0.74
CCDC88C-206ENST00000553437 NUDT1P36639 197 aa10.44□□□□□ -0.74
CCDC88C-206ENST00000553437 PAPOLAP51003 745 aaKnown RBP10.44□□□□□ -0.74
CCDC88C-206ENST00000553437 ZNF135P52742 658 aaPredicted RBP10.44□□□□□ -0.74
CCDC88C-206ENST00000553437 SNRPD1P62314 119 aaKnown RBP10.44□□□□□ -0.74
CCDC88C-206ENST00000553437 SLC25A11Q02978 314 aaKnown RBP10.44□□□□□ -0.74
CCDC88C-206ENST00000553437 CCDC15Q0P6D6 951 aa10.44□□□□□ -0.74
CCDC88C-206ENST00000553437 TBX2Q13207 712 aaPredicted RBP10.44□□□□□ -0.74
CCDC88C-206ENST00000553437 DPYSQ14117 519 aa10.44□□□□□ -0.74
CCDC88C-206ENST00000553437 SLC18A3Q16572 532 aa10.44□□□□□ -0.74
CCDC88C-206ENST00000553437 ZNF284Q2VY69 593 aa10.44□□□□□ -0.74
CCDC88C-206ENST00000553437 PPP6R3Q5H9R7 873 aaPredicted RBP10.44□□□□□ -0.74
CCDC88C-206ENST00000553437 ATXN7L2Q5T6C5 722 aaPredicted RBP10.44□□□□□ -0.74
CCDC88C-206ENST00000553437 NAPEPLDQ6IQ20 393 aa10.44□□□□□ -0.74
CCDC88C-206ENST00000553437 PARS2Q7L3T8 475 aaKnown RBP10.44□□□□□ -0.74
CCDC88C-206ENST00000553437 HORMAD1Q86X24 394 aa10.44□□□□□ -0.74
CCDC88C-206ENST00000553437 NPWQ8N729 165 aa10.44□□□□□ -0.74
CCDC88C-206ENST00000553437 OR6K2Q8NGY2 324 aa10.44□□□□□ -0.74
CCDC88C-206ENST00000553437 PPP1R16AQ96I34 528 aa10.44□□□□□ -0.74
CCDC88C-206ENST00000553437 LRIG1Q96JA1 1093 aa10.44□□□□□ -0.74
CCDC88C-206ENST00000553437 SERAC1Q96JX3 654 aa10.44□□□□□ -0.74
CCDC88C-206ENST00000553437 CHP1Q99653 195 aa10.44□□□□□ -0.74
CCDC88C-206ENST00000553437 PACSIN1Q9BY11 444 aa10.44□□□□□ -0.74
CCDC88C-206ENST00000553437 SLC32A1Q9H598 525 aa10.44□□□□□ -0.74
CCDC88C-206ENST00000553437 ZDHHC6Q9H6R6 413 aa10.44□□□□□ -0.74
CCDC88C-206ENST00000553437 DYRK4Q9NR20 520 aa10.44□□□□□ -0.74
CCDC88C-206ENST00000553437 AASDHPPTQ9NRN7 309 aa10.44□□□□□ -0.74
CCDC88C-206ENST00000553437 TM7SF3Q9NS93 570 aa10.44□□□□□ -0.74
CCDC88C-206ENST00000553437 DONSONQ9NYP3 566 aa10.44□□□□□ -0.74
CCDC88C-206ENST00000553437 LHX3Q9UBR4 397 aa10.44□□□□□ -0.74
CCDC88C-206ENST00000553437 IP6K2Q9UHH9 426 aa10.44□□□□□ -0.74
CCDC88C-206ENST00000553437 ZFR2Q9UPR6 939 aaKnown RBP10.44□□□□□ -0.74
CCDC88C-206ENST00000553437 WASF3Q9UPY6 502 aa10.44□□□□□ -0.74
CCDC88C-206ENST00000553437 DMTF1Q9Y222 760 aa10.44□□□□□ -0.74
CCDC88C-206ENST00000553437 MFHAS1Q9Y4C4 1052 aa10.44□□□□□ -0.74
CCDC88C-206ENST00000553437 PCDHGB2Q9Y5G2 931 aa10.44□□□□□ -0.74
CCDC88C-206ENST00000553437 FADS3Q9Y5Q0 445 aa10.44□□□□□ -0.74
CCDC88C-206ENST00000553437 SPAARA0A1B0GVQ0 90 aa10.43□□□□□ -0.74
CCDC88C-206ENST00000553437 A0A1W2PQU0 124 aa10.43□□□□□ -0.74
CCDC88C-206ENST00000553437 TLR4O00206 839 aa10.43□□□□□ -0.74
CCDC88C-206ENST00000553437 SPINT1O43278 529 aa10.43□□□□□ -0.74
CCDC88C-206ENST00000553437 AP1G1O43747 822 aa10.43□□□□□ -0.74
CCDC88C-206ENST00000553437 MFAP3LO75121 409 aa10.43□□□□□ -0.74
CCDC88C-206ENST00000553437 ADRB3P13945 408 aa10.43□□□□□ -0.74
CCDC88C-206ENST00000553437 NEK3P51956 506 aa10.43□□□□□ -0.74
CCDC88C-206ENST00000553437 ADKP55263 362 aaKnown RBP10.43□□□□□ -0.74
CCDC88C-206ENST00000553437 C21orf59P57076 290 aa10.43□□□□□ -0.74
CCDC88C-206ENST00000553437 NXPH1P58417 271 aa10.43□□□□□ -0.74
CCDC88C-206ENST00000553437 SHBQ15464 509 aa10.43□□□□□ -0.74
CCDC88C-206ENST00000553437 SMTNL2Q2TAL5 461 aa10.43□□□□□ -0.74
CCDC88C-206ENST00000553437 TMEM259Q4ZIN3 620 aa10.43□□□□□ -0.74
CCDC88C-206ENST00000553437 ZNF805Q5CZA5 627 aa10.43□□□□□ -0.74
CCDC88C-206ENST00000553437 PRAMEF14Q5SWL7 426 aa10.43□□□□□ -0.74
CCDC88C-206ENST00000553437 SEL1L3Q68CR1 1132 aa10.43□□□□□ -0.74
CCDC88C-206ENST00000553437 SARM1Q6SZW1 724 aa10.43□□□□□ -0.74
CCDC88C-206ENST00000553437 ARHGAP36Q6ZRI8 547 aa10.43□□□□□ -0.74
CCDC88C-206ENST00000553437 POLNQ7Z5Q5 900 aa10.43□□□□□ -0.74
CCDC88C-206ENST00000553437 ADAT2Q7Z6V5 191 aaKnown RBP10.43□□□□□ -0.74
CCDC88C-206ENST00000553437 ZNF354CQ86Y25 554 aa10.43□□□□□ -0.74
CCDC88C-206ENST00000553437 CPNE8Q86YQ8 564 aa10.43□□□□□ -0.74
CCDC88C-206ENST00000553437 NAXDQ8IW45 347 aa10.43□□□□□ -0.74
CCDC88C-206ENST00000553437 TP53INP2Q8IXH6 220 aa10.43□□□□□ -0.74
CCDC88C-206ENST00000553437 RYBPQ8N488 228 aaPredicted RBP10.43□□□□□ -0.74
CCDC88C-206ENST00000553437 MFSD2AQ8NA29 543 aa10.43□□□□□ -0.74
CCDC88C-206ENST00000553437 TMEM145Q8NBT3 493 aa10.43□□□□□ -0.74
CCDC88C-206ENST00000553437 BAHD1Q8TBE0 780 aaPredicted RBP10.43□□□□□ -0.74
CCDC88C-206ENST00000553437 TEKT4Q8WW24 435 aa10.43□□□□□ -0.74
CCDC88C-206ENST00000553437 ZWILCHQ9H900 591 aa10.43□□□□□ -0.74
CCDC88C-206ENST00000553437 ABHD10Q9NUJ1 306 aa10.43□□□□□ -0.74
CCDC88C-206ENST00000553437 ETNK2Q9NVF9 386 aa10.43□□□□□ -0.74
CCDC88C-206ENST00000553437 UBA2Q9UBT2 640 aaPredicted RBP10.43□□□□□ -0.74
CCDC88C-206ENST00000553437 ANAPC7Q9UJX3 599 aa10.43□□□□□ -0.74
CCDC88C-206ENST00000553437 CA5BQ9Y2D0 317 aa10.43□□□□□ -0.74
CCDC88C-206ENST00000553437 CACNA1EQ15878 2313 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms