RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 C11orf21Q9P2W6 132 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 DKK4Q9UBT3 224 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 KCND3Q9UK17 655 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 VPS28Q9UK41 221 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 CAPN11Q9UMQ6 739 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 ADAMTS5Q9UNA0 930 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 GPR34Q9UPC5 381 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 DYNC1LI1Q9Y6G9 523 aaKnown RBP4.07□□□□□ -1.76
LIMA1-208ENST00000551691 CELSR3Q9NYQ7 3312 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 ZNF236Q9UL36 1845 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 CNOT1A5YKK6 2376 aaKnown RBP4.06□□□□□ -1.76
LIMA1-208ENST00000551691 FLT1P17948 1338 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 TEP1Q99973 2627 aaKnown RBP4.06□□□□□ -1.76
LIMA1-208ENST00000551691 HECTD1Q9ULT8 2610 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 MYO18BQ8IUG5 2567 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 LOC105378220A0A1B0GUY1 285 aaPredicted RBP4.06□□□□□ -1.76
LIMA1-208ENST00000551691 TSPY2A6NKD2 308 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 E9PLN8 166 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 STX16-NPEPL1H3BU86 382 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 VWA5AO00534 786 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 MPHOSPH10O00566 681 aaKnown RBP4.06□□□□□ -1.76
LIMA1-208ENST00000551691 PEX12O00623 359 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 STX16O14662 325 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 CXCL10P02778 98 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 C1SP09871 688 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 TSPY3P0CV98 308 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 TSPY8P0CW00 308 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 ALOX12P18054 663 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 COMTP21964 271 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 SLC6A2P23975 617 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 RBL1P28749 1068 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 SHMT1P34896 483 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 PSMC2P35998 433 aaKnown RBP4.06□□□□□ -1.76
LIMA1-208ENST00000551691 BMPR1AP36894 532 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 STAT1P42224 750 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 RAD52P43351 418 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 RFX5P48382 616 aaPredicted RBP4.06□□□□□ -1.76
LIMA1-208ENST00000551691 PLCD1P51178 756 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 PTTG1IPP53801 180 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 TSPY1Q01534 308 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 GALNT2Q10471 571 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 SF3A3Q12874 501 aaKnown RBP eCLIP4.06□□□□□ -1.76
LIMA1-208ENST00000551691 GRM4Q14833 912 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 PSMD6Q15008 389 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 NPY5RQ15761 445 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 CCDC6Q16204 474 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 LPAL2Q16609 132 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 PTGISQ16647 500 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 NFIL3Q16649 462 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 TBR1Q16650 682 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 CCDC96Q2M329 555 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 LSM12Q3MHD2 195 aaKnown RBP4.06□□□□□ -1.76
LIMA1-208ENST00000551691 MIIPQ5JXC2 388 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 GPATCH4Q5T3I0 446 aaKnown RBP4.06□□□□□ -1.76
LIMA1-208ENST00000551691 ARHGAP40Q5TG30 622 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 MANEALQ5VSG8 457 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 TSHZ3Q63HK5 1081 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 SFRP4Q6FHJ7 346 aaPredicted RBP4.06□□□□□ -1.76
LIMA1-208ENST00000551691 DGAT2L7PQ6IED9 249 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 ATF7IPQ6VMQ6 1270 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 NEK10Q6ZWH5 1172 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 LRRC8DQ7L1W4 858 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 DOK3Q7L591 496 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 R3HCC1LQ7Z5L2 792 aaKnown RBP4.06□□□□□ -1.76
LIMA1-208ENST00000551691 UBALD2Q8IYN6 164 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 MAML2Q8IZL2 1156 aaPredicted RBP4.06□□□□□ -1.76
LIMA1-208ENST00000551691 MB21D1Q8N884 522 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 FAM133AQ8N9E0 248 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 ANKRD52Q8NB46 1076 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 NSUN7Q8NE18 718 aaKnown RBP4.06□□□□□ -1.76
LIMA1-208ENST00000551691 DBF4BQ8NFT6 615 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 OR1N1Q8NGS0 311 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 ADAMTS15Q8TE58 950 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 CHFRQ96EP1 664 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 TMEM176AQ96HP8 235 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 REXO5Q96IC2 774 aaKnown RBP4.06□□□□□ -1.76
LIMA1-208ENST00000551691 MED15Q96RN5 788 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 YME1L1Q96TA2 773 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 VKORC1Q9BQB6 163 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 REEP2Q9BRK0 252 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 TLR10Q9BXR5 811 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 LMAN2LQ9H0V9 348 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 VPS16Q9H269 839 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 CCDC134Q9H6E4 229 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 G6PC2Q9NQR9 355 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 TMEM160Q9NX00 188 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 DNMT3BQ9UBC3 853 aaKnown RBP4.06□□□□□ -1.76
LIMA1-208ENST00000551691 SORCS3Q9UPU3 1222 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 NEU2Q9Y3R4 380 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 COL12A1Q99715 3063 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 CACNA1IQ9P0X4 2223 aa4.06□□□□□ -1.76
LIMA1-208ENST00000551691 COL11A1P12107 1806 aaPredicted RBP4.05□□□□□ -1.76
LIMA1-208ENST00000551691 IL16Q14005 1332 aa4.05□□□□□ -1.76
LIMA1-208ENST00000551691 CCDC78A2IDD5 438 aa4.05□□□□□ -1.76
LIMA1-208ENST00000551691 SPTLC2O15270 562 aa4.05□□□□□ -1.76
LIMA1-208ENST00000551691 KLK10O43240 276 aa4.05□□□□□ -1.76
LIMA1-208ENST00000551691 NARSO43776 548 aaKnown RBP4.05□□□□□ -1.76
LIMA1-208ENST00000551691 STC2O76061 302 aa4.05□□□□□ -1.76
LIMA1-208ENST00000551691 HGFP14210 728 aa4.05□□□□□ -1.76
LIMA1-208ENST00000551691 DRD1P21728 446 aa4.05□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms