RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 LGMNQ99538 433 aa13.09□□□□□ -0.31
PTCH1-218ENST00000548945 TUBGCP2Q9BSJ2 902 aa13.09□□□□□ -0.31
PTCH1-218ENST00000548945 C1QTNF2Q9BXJ5 285 aa13.09□□□□□ -0.31
PTCH1-218ENST00000548945 ABCG4Q9H172 646 aa13.09□□□□□ -0.31
PTCH1-218ENST00000548945 POLR1BQ9H9Y6 1135 aa13.09□□□□□ -0.31
PTCH1-218ENST00000548945 TMPRSS4Q9NRS4 437 aa13.09□□□□□ -0.31
PTCH1-218ENST00000548945 PCDHB1Q9Y5F3 818 aa13.09□□□□□ -0.31
PTCH1-218ENST00000548945 CAPN8A6NHC0 703 aa13.08□□□□□ -0.32
PTCH1-218ENST00000548945 FPGTO14772 594 aa13.08□□□□□ -0.32
PTCH1-218ENST00000548945 TPP1O14773 563 aa13.08□□□□□ -0.32
PTCH1-218ENST00000548945 USP12O75317 370 aa13.08□□□□□ -0.32
PTCH1-218ENST00000548945 CSO75390 466 aaKnown RBP13.08□□□□□ -0.32
PTCH1-218ENST00000548945 C1QL1O75973 258 aa13.08□□□□□ -0.32
PTCH1-218ENST00000548945 CD160O95971 181 aa13.08□□□□□ -0.32
PTCH1-218ENST00000548945 PAK4O96013 591 aaPredicted RBP13.08□□□□□ -0.32
PTCH1-218ENST00000548945 MAPKAPK2P49137 400 aa13.08□□□□□ -0.32
PTCH1-218ENST00000548945 GABREP78334 506 aa13.08□□□□□ -0.32
PTCH1-218ENST00000548945 MAPK8IP2Q13387 824 aaPredicted RBP13.08□□□□□ -0.32
PTCH1-218ENST00000548945 RAPGEF1Q13905 1077 aa13.08□□□□□ -0.32
PTCH1-218ENST00000548945 CAMK4Q16566 473 aa13.08□□□□□ -0.32
PTCH1-218ENST00000548945 MANEALQ5VSG8 457 aa13.08□□□□□ -0.32
PTCH1-218ENST00000548945 BROXQ5VW32 411 aa13.08□□□□□ -0.32
PTCH1-218ENST00000548945 TRNP1Q6NT89 227 aa13.08□□□□□ -0.32
PTCH1-218ENST00000548945 PARS2Q7L3T8 475 aaKnown RBP13.08□□□□□ -0.32
PTCH1-218ENST00000548945 FAM131BQ86XD5 332 aa13.08□□□□□ -0.32
PTCH1-218ENST00000548945 ZNF677Q86XU0 584 aa13.08□□□□□ -0.32
PTCH1-218ENST00000548945 TPCN2Q8NHX9 752 aa13.08□□□□□ -0.32
PTCH1-218ENST00000548945 IFI44Q8TCB0 444 aa13.08□□□□□ -0.32
PTCH1-218ENST00000548945 WBP1Q96G27 269 aa13.08□□□□□ -0.32
PTCH1-218ENST00000548945 TBATAQ96M53 351 aa13.08□□□□□ -0.32
PTCH1-218ENST00000548945 CFAP57Q96MR6 1250 aa13.08□□□□□ -0.32
PTCH1-218ENST00000548945 KLF6Q99612 283 aaPredicted RBP13.08□□□□□ -0.32
PTCH1-218ENST00000548945 NAA15Q9BXJ9 866 aaKnown RBP13.08□□□□□ -0.32
PTCH1-218ENST00000548945 OSBPL1AQ9BXW6 950 aa13.08□□□□□ -0.32
PTCH1-218ENST00000548945 HECAQ9UBI9 543 aaPredicted RBP13.08□□□□□ -0.32
PTCH1-218ENST00000548945 SALL4Q9UJQ4 1053 aa13.08□□□□□ -0.32
PTCH1-218ENST00000548945 C16orf96A6NNT2 1141 aa13.07□□□□□ -0.32
PTCH1-218ENST00000548945 GOLGA8SH3BPF8 625 aa13.07□□□□□ -0.32
PTCH1-218ENST00000548945 ERVH48-1M5A8F1 160 aa13.07□□□□□ -0.32
PTCH1-218ENST00000548945 TOR1BO14657 336 aa13.07□□□□□ -0.32
PTCH1-218ENST00000548945 RAD51BO15315 384 aa13.07□□□□□ -0.32
PTCH1-218ENST00000548945 AQP9O43315 295 aa13.07□□□□□ -0.32
PTCH1-218ENST00000548945 NEBLO76041 1014 aa13.07□□□□□ -0.32
PTCH1-218ENST00000548945 GSRP00390 522 aa13.07□□□□□ -0.32
PTCH1-218ENST00000548945 PRB1P04280 392 aa13.07□□□□□ -0.32
PTCH1-218ENST00000548945 MPOP05164 745 aa13.07□□□□□ -0.32
PTCH1-218ENST00000548945 UCHL3P15374 230 aa13.07□□□□□ -0.32
PTCH1-218ENST00000548945 RHOQP17081 205 aa13.07□□□□□ -0.32
PTCH1-218ENST00000548945 ERCC5P28715 1186 aaPredicted RBP13.07□□□□□ -0.32
PTCH1-218ENST00000548945 DNA2P51530 1060 aa13.07□□□□□ -0.32
PTCH1-218ENST00000548945 TMPRSS3P57727 454 aa13.07□□□□□ -0.32
PTCH1-218ENST00000548945 PFN3P60673 137 aa13.07□□□□□ -0.32
PTCH1-218ENST00000548945 NOMO3P69849 1222 aa13.07□□□□□ -0.32
PTCH1-218ENST00000548945 POLD3Q15054 466 aaPredicted RBP13.07□□□□□ -0.32
PTCH1-218ENST00000548945 ARL13BQ3SXY8 428 aa13.07□□□□□ -0.32
PTCH1-218ENST00000548945 ZNF805Q5CZA5 627 aa13.07□□□□□ -0.32
PTCH1-218ENST00000548945 ZNF542PQ5EBM4 170 aa13.07□□□□□ -0.32
PTCH1-218ENST00000548945 DRC7Q8IY82 874 aa13.07□□□□□ -0.32
PTCH1-218ENST00000548945 MAPK15Q8TD08 544 aa13.07□□□□□ -0.32
PTCH1-218ENST00000548945 BTN2A2Q8WVV5 523 aa13.07□□□□□ -0.32
PTCH1-218ENST00000548945 ARHGEF2Q92974 986 aaKnown RBP13.07□□□□□ -0.32
PTCH1-218ENST00000548945 STK33Q9BYT3 514 aa13.07□□□□□ -0.32
PTCH1-218ENST00000548945 DPH1Q9BZG8 443 aa13.07□□□□□ -0.32
PTCH1-218ENST00000548945 OSBPL2Q9H1P3 480 aa13.07□□□□□ -0.32
PTCH1-218ENST00000548945 MAGEH1Q9H213 219 aa13.07□□□□□ -0.32
PTCH1-218ENST00000548945 ZDHHC6Q9H6R6 413 aa13.07□□□□□ -0.32
PTCH1-218ENST00000548945 ASCL3Q9NQ33 180 aa13.07□□□□□ -0.32
PTCH1-218ENST00000548945 THSD1Q9NS62 852 aa13.07□□□□□ -0.32
PTCH1-218ENST00000548945 OR12D3Q9UGF7 316 aa13.07□□□□□ -0.32
PTCH1-218ENST00000548945 IPO11Q9UI26 975 aaKnown RBP13.07□□□□□ -0.32
PTCH1-218ENST00000548945 HPCAL4Q9UM19 191 aa13.07□□□□□ -0.32
PTCH1-218ENST00000548945 FCF1Q9Y324 198 aaKnown RBP13.07□□□□□ -0.32
PTCH1-218ENST00000548945 FHOD1Q9Y613 1164 aa13.07□□□□□ -0.32
PTCH1-218ENST00000548945 LRRK1Q38SD2 2015 aa13.06□□□□□ -0.32
PTCH1-218ENST00000548945 SPTA1P02549 2419 aa13.06□□□□□ -0.32
PTCH1-218ENST00000548945 EME2A4GXA9 379 aaPredicted RBP13.06□□□□□ -0.32
PTCH1-218ENST00000548945 ZSCAN5CA6NGD5 496 aaPredicted RBP13.06□□□□□ -0.32
PTCH1-218ENST00000548945 IGLON5A6NGN9 336 aa13.06□□□□□ -0.32
PTCH1-218ENST00000548945 F8VZ95 297 aa13.06□□□□□ -0.32
PTCH1-218ENST00000548945 NEMP1O14524 444 aa13.06□□□□□ -0.32
PTCH1-218ENST00000548945 TCEA3O75764 348 aa13.06□□□□□ -0.32
PTCH1-218ENST00000548945 POP4O95707 220 aaKnown RBP13.06□□□□□ -0.32
PTCH1-218ENST00000548945 JUNDP17535 347 aa13.06□□□□□ -0.32
PTCH1-218ENST00000548945 ADRA1BP35368 520 aa13.06□□□□□ -0.32
PTCH1-218ENST00000548945 SNRPD1P62314 119 aaKnown RBP13.06□□□□□ -0.32
PTCH1-218ENST00000548945 CXADRP78310 365 aa13.06□□□□□ -0.32
PTCH1-218ENST00000548945 RHDQ02161 417 aa13.06□□□□□ -0.32
PTCH1-218ENST00000548945 PDE1CQ14123 709 aaPredicted RBP13.06□□□□□ -0.32
PTCH1-218ENST00000548945 PTK2BQ14289 1009 aa13.06□□□□□ -0.32
PTCH1-218ENST00000548945 ISXQ2M1V0 245 aa13.06□□□□□ -0.32
PTCH1-218ENST00000548945 TAF3Q5VWG9 929 aa13.06□□□□□ -0.32
PTCH1-218ENST00000548945 NOP9Q86U38 636 aaKnown RBP13.06□□□□□ -0.32
PTCH1-218ENST00000548945 NLRP14Q86W24 1093 aa13.06□□□□□ -0.32
PTCH1-218ENST00000548945 OR2AP1Q8NGE2 309 aa13.06□□□□□ -0.32
PTCH1-218ENST00000548945 WDR48Q8TAF3 677 aa13.06□□□□□ -0.32
PTCH1-218ENST00000548945 EPS8L1Q8TE68 723 aa13.06□□□□□ -0.32
PTCH1-218ENST00000548945 SNRNP27Q8WVK2 155 aaKnown RBP13.06□□□□□ -0.32
PTCH1-218ENST00000548945 GLMNQ92990 594 aa13.06□□□□□ -0.32
PTCH1-218ENST00000548945 GBP4Q96PP9 640 aa13.06□□□□□ -0.32
PTCH1-218ENST00000548945 TM6SF2Q9BZW4 377 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms