RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 SLC25A17O43808 307 aa4.39□□□□□ -1.71
VPS29-205ENST00000548539 NEURL1O76050 574 aa4.39□□□□□ -1.71
VPS29-205ENST00000548539 SERPINC1P01008 464 aa4.39□□□□□ -1.71
VPS29-205ENST00000548539 WNT1P04628 370 aa4.39□□□□□ -1.71
VPS29-205ENST00000548539 CERS1P27544 350 aa4.39□□□□□ -1.71
VPS29-205ENST00000548539 MPGP29372 298 aa4.39□□□□□ -1.71
VPS29-205ENST00000548539 FMO4P31512 558 aa4.39□□□□□ -1.71
VPS29-205ENST00000548539 ARL3P36405 182 aa4.39□□□□□ -1.71
VPS29-205ENST00000548539 SLC12A2P55011 1212 aa4.39□□□□□ -1.71
VPS29-205ENST00000548539 DRG2P55039 364 aaKnown RBP4.39□□□□□ -1.71
VPS29-205ENST00000548539 ARF3P61204 181 aaPredicted RBP4.39□□□□□ -1.71
VPS29-205ENST00000548539 ARF1P84077 181 aaKnown RBP4.39□□□□□ -1.71
VPS29-205ENST00000548539 STIM1Q13586 685 aa4.39□□□□□ -1.71
VPS29-205ENST00000548539 RPE65Q16518 533 aa4.39□□□□□ -1.71
VPS29-205ENST00000548539 PLK5Q496M5 336 aa4.39□□□□□ -1.71
VPS29-205ENST00000548539 TADA2BQ86TJ2 420 aa4.39□□□□□ -1.71
VPS29-205ENST00000548539 GPAT4Q86UL3 456 aa4.39□□□□□ -1.71
VPS29-205ENST00000548539 WDR5BQ86VZ2 330 aa4.39□□□□□ -1.71
VPS29-205ENST00000548539 NME8Q8N427 588 aa4.39□□□□□ -1.71
VPS29-205ENST00000548539 CMASQ8NFW8 434 aaPredicted RBP4.39□□□□□ -1.71
VPS29-205ENST00000548539 FAR1Q8WVX9 515 aa4.39□□□□□ -1.71
VPS29-205ENST00000548539 TIGD1Q96MW7 591 aa4.39□□□□□ -1.71
VPS29-205ENST00000548539 TEFMQ96QE5 360 aaKnown RBP4.39□□□□□ -1.71
VPS29-205ENST00000548539 FRG2BQ96QU4 278 aa4.39□□□□□ -1.71
VPS29-205ENST00000548539 PIMREGQ9BSJ6 248 aa4.39□□□□□ -1.71
VPS29-205ENST00000548539 NUF2Q9BZD4 464 aa4.39□□□□□ -1.71
VPS29-205ENST00000548539 ATP8A2Q9NTI2 1148 aa4.39□□□□□ -1.71
VPS29-205ENST00000548539 C20orf141Q9NUB4 165 aa4.39□□□□□ -1.71
VPS29-205ENST00000548539 MPP6Q9NZW5 540 aa4.39□□□□□ -1.71
VPS29-205ENST00000548539 MKLN1Q9UL63 735 aa4.39□□□□□ -1.71
VPS29-205ENST00000548539 WDR17Q8IZU2 1322 aa4.39□□□□□ -1.71
VPS29-205ENST00000548539 ARHGAP10A1A4S6 786 aa4.38□□□□□ -1.71
VPS29-205ENST00000548539 DDTLA6NHG4 134 aaPredicted RBP4.38□□□□□ -1.71
VPS29-205ENST00000548539 PRR23D1E9PI22 279 aaPredicted RBP4.38□□□□□ -1.71
VPS29-205ENST00000548539 AP3D1O14617 1153 aa4.38□□□□□ -1.71
VPS29-205ENST00000548539 PTP4A3O75365 173 aa4.38□□□□□ -1.71
VPS29-205ENST00000548539 CD63P08962 238 aa4.38□□□□□ -1.71
VPS29-205ENST00000548539 PRR23D2P0DMB1 279 aaPredicted RBP4.38□□□□□ -1.71
VPS29-205ENST00000548539 ACADMP11310 421 aa4.38□□□□□ -1.71
VPS29-205ENST00000548539 NFKBIAP25963 317 aa4.38□□□□□ -1.71
VPS29-205ENST00000548539 POU1F1P28069 291 aa4.38□□□□□ -1.71
VPS29-205ENST00000548539 RARSP54136 660 aaKnown RBP4.38□□□□□ -1.71
VPS29-205ENST00000548539 ARSFP54793 590 aa4.38□□□□□ -1.71
VPS29-205ENST00000548539 NAP1L1P55209 391 aaKnown RBP4.38□□□□□ -1.71
VPS29-205ENST00000548539 PMPCAQ10713 525 aa4.38□□□□□ -1.71
VPS29-205ENST00000548539 EIF4A2Q14240 407 aaKnown RBP4.38□□□□□ -1.71
VPS29-205ENST00000548539 MED22Q15528 200 aa4.38□□□□□ -1.71
VPS29-205ENST00000548539 ZNF260Q3ZCT1 412 aa4.38□□□□□ -1.71
VPS29-205ENST00000548539 SYTL3Q4VX76 610 aa4.38□□□□□ -1.71
VPS29-205ENST00000548539 EARS2Q5JPH6 523 aaKnown RBP4.38□□□□□ -1.71
VPS29-205ENST00000548539 CEP78Q5JTW2 689 aa4.38□□□□□ -1.71
VPS29-205ENST00000548539 VWA5B1Q5TIE3 1220 aa4.38□□□□□ -1.71
VPS29-205ENST00000548539 PRSS45Q7RTY3 260 aa4.38□□□□□ -1.71
VPS29-205ENST00000548539 TRIM74Q86UV6 250 aa4.38□□□□□ -1.71
VPS29-205ENST00000548539 TRIM73Q86UV7 250 aa4.38□□□□□ -1.71
VPS29-205ENST00000548539 CADM4Q8NFZ8 388 aa4.38□□□□□ -1.71
VPS29-205ENST00000548539 ATOH1Q92858 354 aaPredicted RBP4.38□□□□□ -1.71
VPS29-205ENST00000548539 HMCESQ96FZ2 354 aa4.38□□□□□ -1.71
VPS29-205ENST00000548539 CENPOQ9BU64 300 aa4.38□□□□□ -1.71
VPS29-205ENST00000548539 ACTR5Q9H9F9 607 aaPredicted RBP4.38□□□□□ -1.71
VPS29-205ENST00000548539 EIF2B3Q9NR50 452 aaKnown RBP4.38□□□□□ -1.71
VPS29-205ENST00000548539 DIAPH3Q9NSV4 1193 aa4.38□□□□□ -1.71
VPS29-205ENST00000548539 SEPT11Q9NVA2 429 aaKnown RBP4.38□□□□□ -1.71
VPS29-205ENST00000548539 HAUS2Q9NVX0 235 aa4.38□□□□□ -1.71
VPS29-205ENST00000548539 ELOVL5Q9NYP7 299 aa4.38□□□□□ -1.71
VPS29-205ENST00000548539 GRHL1Q9NZI5 618 aa4.38□□□□□ -1.71
VPS29-205ENST00000548539 KIAA1456Q9P272 454 aa4.38□□□□□ -1.71
VPS29-205ENST00000548539 PLEKHB1Q9UF11 243 aaPredicted RBP4.38□□□□□ -1.71
VPS29-205ENST00000548539 GPR34Q9UPC5 381 aa4.38□□□□□ -1.71
VPS29-205ENST00000548539 LAMP3Q9UQV4 416 aa4.38□□□□□ -1.71
VPS29-205ENST00000548539 A0A1W2PQM1 296 aa4.37□□□□□ -1.71
VPS29-205ENST00000548539 CYSRT1A8MQ03 144 aa4.37□□□□□ -1.71
VPS29-205ENST00000548539 TMCC1O94876 653 aa4.37□□□□□ -1.71
VPS29-205ENST00000548539 SEC31AO94979 1220 aaKnown RBP4.37□□□□□ -1.71
VPS29-205ENST00000548539 LATS1O95835 1130 aa4.37□□□□□ -1.71
VPS29-205ENST00000548539 SCGB1D1O95968 90 aa4.37□□□□□ -1.71
VPS29-205ENST00000548539 CCKARP32238 428 aa4.37□□□□□ -1.71
VPS29-205ENST00000548539 PBX3P40426 434 aa4.37□□□□□ -1.71
VPS29-205ENST00000548539 MLH1P40692 756 aa4.37□□□□□ -1.71
VPS29-205ENST00000548539 ARHGAP25P42331 645 aa4.37□□□□□ -1.71
VPS29-205ENST00000548539 EIF3BP55884 814 aaKnown RBP4.37□□□□□ -1.71
VPS29-205ENST00000548539 TMPRSS3P57727 454 aa4.37□□□□□ -1.71
VPS29-205ENST00000548539 HSF1Q00613 529 aa4.37□□□□□ -1.71
VPS29-205ENST00000548539 CYP4A11Q02928 519 aa4.37□□□□□ -1.71
VPS29-205ENST00000548539 TMEM115Q12893 351 aaPredicted RBP4.37□□□□□ -1.71
VPS29-205ENST00000548539 PRKG2Q13237 762 aa4.37□□□□□ -1.71
VPS29-205ENST00000548539 MAMLD1Q13495 774 aa4.37□□□□□ -1.71
VPS29-205ENST00000548539 VEPH1Q14D04 833 aa4.37□□□□□ -1.71
VPS29-205ENST00000548539 TAF11Q15544 211 aa4.37□□□□□ -1.71
VPS29-205ENST00000548539 MEA1Q16626 185 aa4.37□□□□□ -1.71
VPS29-205ENST00000548539 SLC9C1Q4G0N8 1177 aa4.37□□□□□ -1.71
VPS29-205ENST00000548539 ALG10Q5BKT4 473 aa4.37□□□□□ -1.71
VPS29-205ENST00000548539 ALG10BQ5I7T1 473 aa4.37□□□□□ -1.71
VPS29-205ENST00000548539 ENTPD8Q5MY95 495 aa4.37□□□□□ -1.71
VPS29-205ENST00000548539 SERTAD4-AS1Q5TG53 156 aa4.37□□□□□ -1.71
VPS29-205ENST00000548539 TBC1D9BQ66K14 1250 aa4.37□□□□□ -1.71
VPS29-205ENST00000548539 CCDC129Q6ZRS4 1044 aa4.37□□□□□ -1.71
VPS29-205ENST00000548539 IKBIPQ70UQ0 350 aa4.37□□□□□ -1.71
VPS29-205ENST00000548539 FAM57BQ71RH2 274 aa4.37□□□□□ -1.71
VPS29-205ENST00000548539 SLC46A3Q7Z3Q1 461 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms