RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 SEMA3CQ99985 751 aa13.62□□□□□ -0.23
PTCH1-215ENST00000547672 MGME1Q9BQP7 344 aa13.62□□□□□ -0.23
PTCH1-215ENST00000547672 PLCD4Q9BRC7 762 aa13.62□□□□□ -0.23
PTCH1-215ENST00000547672 C17orf80Q9BSJ5 609 aa13.62□□□□□ -0.23
PTCH1-215ENST00000547672 FAM167BQ9BTA0 163 aa13.62□□□□□ -0.23
PTCH1-215ENST00000547672 ADGRE3Q9BY15 652 aa13.62□□□□□ -0.23
PTCH1-215ENST00000547672 PDFQ9HBH1 243 aa13.62□□□□□ -0.23
PTCH1-215ENST00000547672 C20orf96Q9NUD7 363 aaPredicted RBP13.62□□□□□ -0.23
PTCH1-215ENST00000547672 MKS1Q9NXB0 559 aa13.62□□□□□ -0.23
PTCH1-215ENST00000547672 DCDC2Q9UHG0 476 aa13.62□□□□□ -0.23
PTCH1-215ENST00000547672 GGA2Q9UJY4 613 aa13.62□□□□□ -0.23
PTCH1-215ENST00000547672 RIMKLBQ9ULI2 386 aa13.62□□□□□ -0.23
PTCH1-215ENST00000547672 TCAF1Q9Y4C2 921 aa13.62□□□□□ -0.23
PTCH1-215ENST00000547672 LOC285095A0A1B0GVY8 99 aa13.61□□□□□ -0.23
PTCH1-215ENST00000547672 TRIM49D1C9J1S8 452 aa13.61□□□□□ -0.23
PTCH1-215ENST00000547672 CBX4O00257 560 aa13.61□□□□□ -0.23
PTCH1-215ENST00000547672 LEFTY2O00292 366 aa13.61□□□□□ -0.23
PTCH1-215ENST00000547672 EBAG9O00559 213 aa13.61□□□□□ -0.23
PTCH1-215ENST00000547672 COPEO14579 308 aa13.61□□□□□ -0.23
PTCH1-215ENST00000547672 MT-CYBP00156 380 aaPredicted RBP13.61□□□□□ -0.23
PTCH1-215ENST00000547672 DNAJB1P25685 340 aa13.61□□□□□ -0.23
PTCH1-215ENST00000547672 WEE1P30291 646 aa13.61□□□□□ -0.23
PTCH1-215ENST00000547672 CYP4F8P98187 520 aa13.61□□□□□ -0.23
PTCH1-215ENST00000547672 CDK18Q07002 472 aa13.61□□□□□ -0.23
PTCH1-215ENST00000547672 THOC5Q13769 683 aaKnown RBP13.61□□□□□ -0.23
PTCH1-215ENST00000547672 RAB30Q15771 203 aa13.61□□□□□ -0.23
PTCH1-215ENST00000547672 ZSCAN26Q16670 478 aa13.61□□□□□ -0.23
PTCH1-215ENST00000547672 GKAP1Q5VSY0 366 aaPredicted RBP13.61□□□□□ -0.23
PTCH1-215ENST00000547672 KIAA0408Q6ZU52 694 aa13.61□□□□□ -0.23
PTCH1-215ENST00000547672 ANKS4BQ8N8V4 417 aa13.61□□□□□ -0.23
PTCH1-215ENST00000547672 BANPQ8N9N5 519 aa13.61□□□□□ -0.23
PTCH1-215ENST00000547672 DCAF4L2Q8NA75 395 aa13.61□□□□□ -0.23
PTCH1-215ENST00000547672 FIBINQ8TAL6 211 aa13.61□□□□□ -0.23
PTCH1-215ENST00000547672 ARRDC2Q8TBH0 407 aa13.61□□□□□ -0.23
PTCH1-215ENST00000547672 SCG3Q8WXD2 468 aaKnown RBP13.61□□□□□ -0.23
PTCH1-215ENST00000547672 PRICKLE1Q96MT3 831 aaPredicted RBP13.61□□□□□ -0.23
PTCH1-215ENST00000547672 NUDCD1Q96RS6 583 aa13.61□□□□□ -0.23
PTCH1-215ENST00000547672 FEM1AQ9BSK4 669 aa13.61□□□□□ -0.23
PTCH1-215ENST00000547672 SLC46A2Q9BY10 475 aa13.61□□□□□ -0.23
PTCH1-215ENST00000547672 FAM107BQ9H098 131 aa13.61□□□□□ -0.23
PTCH1-215ENST00000547672 VPS11Q9H270 941 aa13.61□□□□□ -0.23
PTCH1-215ENST00000547672 KIF9Q9HAQ2 790 aa13.61□□□□□ -0.23
PTCH1-215ENST00000547672 PIDD1Q9HB75 910 aa13.61□□□□□ -0.23
PTCH1-215ENST00000547672 SCUBE2Q9NQ36 999 aa13.61□□□□□ -0.23
PTCH1-215ENST00000547672 TDP1Q9NUW8 608 aa13.61□□□□□ -0.23
PTCH1-215ENST00000547672 VPS28Q9UK41 221 aa13.61□□□□□ -0.23
PTCH1-215ENST00000547672 GRID1Q9ULK0 1009 aa13.61□□□□□ -0.23
PTCH1-215ENST00000547672 PLXNA4Q9HCM2 1894 aa13.61□□□□□ -0.23
PTCH1-215ENST00000547672 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.6□□□□□ -0.23
PTCH1-215ENST00000547672 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.6□□□□□ -0.23
PTCH1-215ENST00000547672 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.6□□□□□ -0.23
PTCH1-215ENST00000547672 A0A1W2PPM1 405 aa13.6□□□□□ -0.23
PTCH1-215ENST00000547672 GFRA2O00451 464 aa13.6□□□□□ -0.23
PTCH1-215ENST00000547672 GRM6O15303 877 aa13.6□□□□□ -0.23
PTCH1-215ENST00000547672 INSIG1O15503 277 aa13.6□□□□□ -0.23
PTCH1-215ENST00000547672 TYROBPO43914 113 aa13.6□□□□□ -0.23
PTCH1-215ENST00000547672 GREM1O60565 184 aa13.6□□□□□ -0.23
PTCH1-215ENST00000547672 CRTAMO95727 393 aa13.6□□□□□ -0.23
PTCH1-215ENST00000547672 NDST3O95803 873 aa13.6□□□□□ -0.23
PTCH1-215ENST00000547672 C1QAP02745 245 aa13.6□□□□□ -0.23
PTCH1-215ENST00000547672 MPOP05164 745 aa13.6□□□□□ -0.23
PTCH1-215ENST00000547672 RHOP08100 348 aa13.6□□□□□ -0.23
PTCH1-215ENST00000547672 VIMP08670 466 aaKnown RBP13.6□□□□□ -0.23
PTCH1-215ENST00000547672 TPH1P17752 444 aa13.6□□□□□ -0.23
PTCH1-215ENST00000547672 HOXD9P28356 352 aaPredicted RBP13.6□□□□□ -0.23
PTCH1-215ENST00000547672 PLK1P53350 603 aa13.6□□□□□ -0.23
PTCH1-215ENST00000547672 CRADDP78560 199 aa13.6□□□□□ -0.23
PTCH1-215ENST00000547672 DMTNQ08495 405 aa13.6□□□□□ -0.23
PTCH1-215ENST00000547672 DMC1Q14565 340 aa13.6□□□□□ -0.23
PTCH1-215ENST00000547672 EFTUD2Q15029 972 aaKnown RBP eCLIP13.6□□□□□ -0.23
PTCH1-215ENST00000547672 SLC1A5Q15758 541 aa13.6□□□□□ -0.23
PTCH1-215ENST00000547672 DBN1Q16643 649 aa13.6□□□□□ -0.23
PTCH1-215ENST00000547672 INSCQ1MX18 579 aa13.6□□□□□ -0.23
PTCH1-215ENST00000547672 TTC19Q6DKK2 380 aaPredicted RBP13.6□□□□□ -0.23
PTCH1-215ENST00000547672 DENND5AQ6IQ26 1287 aa13.6□□□□□ -0.23
PTCH1-215ENST00000547672 TRMT10BQ6PF06 316 aaKnown RBP13.6□□□□□ -0.23
PTCH1-215ENST00000547672 PACS1Q6VY07 963 aa13.6□□□□□ -0.23
PTCH1-215ENST00000547672 CCDC91Q7Z6B0 441 aa13.6□□□□□ -0.23
PTCH1-215ENST00000547672 KCNMB4Q86W47 210 aa13.6□□□□□ -0.23
PTCH1-215ENST00000547672 MFN1Q8IWA4 741 aa13.6□□□□□ -0.23
PTCH1-215ENST00000547672 OR7D4Q8NG98 312 aa13.6□□□□□ -0.23
PTCH1-215ENST00000547672 ADAMTS19Q8TE59 1207 aa13.6□□□□□ -0.23
PTCH1-215ENST00000547672 DENND1AQ8TEH3 1009 aa13.6□□□□□ -0.23
PTCH1-215ENST00000547672 MZB1Q8WU39 189 aa13.6□□□□□ -0.23
PTCH1-215ENST00000547672 APOPT1Q96IL0 206 aa13.6□□□□□ -0.23
PTCH1-215ENST00000547672 SLC22A12Q96S37 553 aa13.6□□□□□ -0.23
PTCH1-215ENST00000547672 SLC2A11Q9BYW1 496 aa13.6□□□□□ -0.23
PTCH1-215ENST00000547672 TLE6Q9H808 572 aa13.6□□□□□ -0.23
PTCH1-215ENST00000547672 CHRAC1Q9NRG0 131 aa13.6□□□□□ -0.23
PTCH1-215ENST00000547672 DZANK1Q9NVP4 752 aa13.6□□□□□ -0.23
PTCH1-215ENST00000547672 NYNRINQ9P2P1 1898 aaKnown RBP13.6□□□□□ -0.23
PTCH1-215ENST00000547672 ALPK3Q96L96 1907 aa13.6□□□□□ -0.23
PTCH1-215ENST00000547672 DENND4CQ5VZ89 1909 aa13.59□□□□□ -0.23
PTCH1-215ENST00000547672 A0A0D9SEW6 157 aa13.59□□□□□ -0.23
PTCH1-215ENST00000547672 ZCWPW2A0A1B0GU75 182 aa13.59□□□□□ -0.23
PTCH1-215ENST00000547672 CXorf49A8MYA2 514 aaPredicted RBP13.59□□□□□ -0.23
PTCH1-215ENST00000547672 PFDN6O15212 129 aa13.59□□□□□ -0.23
PTCH1-215ENST00000547672 GSTA1P08263 222 aa13.59□□□□□ -0.23
PTCH1-215ENST00000547672 HOXB8P17481 243 aaPredicted RBP13.59□□□□□ -0.23
PTCH1-215ENST00000547672 CRHR1P34998 444 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms