RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 CD44P16070 742 aaKnown RBP9□□□□□ -0.97
VPS13D-212ENST00000543766 ECHS1P30084 290 aa9□□□□□ -0.97
VPS13D-212ENST00000543766 CDC25AP30304 524 aa9□□□□□ -0.97
VPS13D-212ENST00000543766 VAV2P52735 878 aa9□□□□□ -0.97
VPS13D-212ENST00000543766 DRG2P55039 364 aaKnown RBP9□□□□□ -0.97
VPS13D-212ENST00000543766 GPX6P59796 221 aa9□□□□□ -0.97
VPS13D-212ENST00000543766 SNX17Q15036 470 aa9□□□□□ -0.97
VPS13D-212ENST00000543766 PCBP1Q15365 356 aaKnown RBP eCLIP9□□□□□ -0.97
VPS13D-212ENST00000543766 PFKFB3Q16875 520 aaPredicted RBP9□□□□□ -0.97
VPS13D-212ENST00000543766 KLHL26Q53HC5 615 aa9□□□□□ -0.97
VPS13D-212ENST00000543766 TNFAIP8L3Q5GJ75 292 aa9□□□□□ -0.97
VPS13D-212ENST00000543766 THEM4Q5T1C6 240 aa9□□□□□ -0.97
VPS13D-212ENST00000543766 BEND3Q5T5X7 828 aa9□□□□□ -0.97
VPS13D-212ENST00000543766 TIGD3Q6B0B8 471 aa9□□□□□ -0.97
VPS13D-212ENST00000543766 C3orf33Q6P1S2 294 aa9□□□□□ -0.97
VPS13D-212ENST00000543766 ERN2Q76MJ5 926 aaKnown RBP9□□□□□ -0.97
VPS13D-212ENST00000543766 ZSCAN29Q8IWY8 852 aaPredicted RBP9□□□□□ -0.97
VPS13D-212ENST00000543766 FBXW5Q969U6 566 aa9□□□□□ -0.97
VPS13D-212ENST00000543766 WNK4Q96J92 1243 aa9□□□□□ -0.97
VPS13D-212ENST00000543766 FAM83CQ9BQN1 747 aa9□□□□□ -0.97
VPS13D-212ENST00000543766 GPR61Q9BZJ8 451 aa9□□□□□ -0.97
VPS13D-212ENST00000543766 QRSL1Q9H0R6 528 aaKnown RBP9□□□□□ -0.97
VPS13D-212ENST00000543766 ETNK1Q9HBU6 452 aa9□□□□□ -0.97
VPS13D-212ENST00000543766 RGS17Q9UGC6 210 aaPredicted RBP9□□□□□ -0.97
VPS13D-212ENST00000543766 LAMB4A4D0S4 1761 aa9□□□□□ -0.97
VPS13D-212ENST00000543766 B4E171 279 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 M0QZ92 97 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 VPS4BO75351 444 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 PCSK2P16519 638 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 CXCR2P25025 360 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 SLC5A2P31639 672 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 RNF144AP50876 292 aaPredicted RBP8.99□□□□□ -0.97
VPS13D-212ENST00000543766 GRIN1Q05586 938 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 SYT16Q17RD7 645 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 ERMARDQ5T6L9 678 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 DUPD1Q68J44 220 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 SGMS1Q86VZ5 419 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 RHPN2Q8IUC4 686 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 DTX3LQ8TDB6 740 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 PHKBQ93100 1093 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 SEMA4CQ9C0C4 833 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 DNAJB9Q9UBS3 223 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 DBF4Q9UBU7 674 aaPredicted RBP8.99□□□□□ -0.97
VPS13D-212ENST00000543766 KCNH3Q9ULD8 1083 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 UTP11Q9Y3A2 253 aaKnown RBP8.99□□□□□ -0.97
VPS13D-212ENST00000543766 PMF1-BGLAPU3KQ54 211 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 RGS5O15539 181 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 MOCS2O96007 188 aaPredicted RBP8.99□□□□□ -0.97
VPS13D-212ENST00000543766 CSTAP01040 98 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 PLCG1P19174 1290 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 CYP2A7P20853 494 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 MAGEA11P43364 429 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 PIP4K2AP48426 406 aaPredicted RBP8.99□□□□□ -0.97
VPS13D-212ENST00000543766 MYBPC1Q00872 1141 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 MEF2AQ02078 507 aaPredicted RBP8.99□□□□□ -0.97
VPS13D-212ENST00000543766 TOP3AQ13472 1001 aaPredicted RBP8.99□□□□□ -0.97
VPS13D-212ENST00000543766 OGFOD2Q6N063 350 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 SLC25A24Q6NUK1 477 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 MTFR2Q6P444 385 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 SNX20Q7Z614 316 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 RABEPKQ7Z6M1 372 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 CUZD1Q86UP6 607 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 DNAAF5Q86Y56 855 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 STMN2Q93045 179 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 MSANTD3Q96H12 275 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 LACRTQ9GZZ8 138 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 CCDC134Q9H6E4 229 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 ZFP37Q9Y6Q3 630 aaPredicted RBP8.99□□□□□ -0.97
VPS13D-212ENST00000543766 SEC23IPQ9Y6Y8 1000 aaKnown RBP8.99□□□□□ -0.97
VPS13D-212ENST00000543766 MYH10P35580 1976 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 HEG1Q9ULI3 1381 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 MASP2O00187 686 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 SPOPO43791 374 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 DHFRP00374 187 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 ERVFC1P60507 584 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 LASP1Q14847 261 aaKnown RBP8.99□□□□□ -0.97
VPS13D-212ENST00000543766 GPR68Q15743 365 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 KRTCAP3Q53RY4 240 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 SEL1L2Q5TEA6 688 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 SH3RF1Q7Z6J0 888 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 NKAIN4Q8IVV8 208 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 METTL4Q8N3J2 472 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 KLHL36Q8N4N3 616 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 OXR1Q8N573 874 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 RNASE11Q8TAA1 199 aaKnown RBP8.99□□□□□ -0.97
VPS13D-212ENST00000543766 FBXO32Q969P5 355 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 TEKT5Q96M29 485 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 RAB3IPQ96QF0 476 aaPredicted RBP8.99□□□□□ -0.97
VPS13D-212ENST00000543766 IFT27Q9BW83 186 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 RSAD1Q9HA92 442 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 TLR7Q9NYK1 1049 aaKnown RBP8.99□□□□□ -0.97
VPS13D-212ENST00000543766 GRHL1Q9NZI5 618 aa8.99□□□□□ -0.97
VPS13D-212ENST00000543766 NKX1-2Q9UD57 310 aaPredicted RBP8.99□□□□□ -0.97
VPS13D-212ENST00000543766 C5P01031 1676 aa8.98□□□□□ -0.97
VPS13D-212ENST00000543766 SERTM2A0A1B0GWG4 89 aa8.98□□□□□ -0.97
VPS13D-212ENST00000543766 A0A1W2PPW3 197 aa8.98□□□□□ -0.97
VPS13D-212ENST00000543766 BTBD17A6NE02 478 aa8.98□□□□□ -0.97
VPS13D-212ENST00000543766 LRRC53A6NM62 1247 aa8.98□□□□□ -0.97
VPS13D-212ENST00000543766 ZNF888P0CJ79 500 aaPredicted RBP8.98□□□□□ -0.97
VPS13D-212ENST00000543766 STAG3L3P0CL85 134 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms