RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 SCML4Q8N228 414 aa5.29□□□□□ -1.56
CLIP1-217ENST00000543205 WDTC1Q8N5D0 677 aa5.29□□□□□ -1.56
CLIP1-217ENST00000543205 OR8K1Q8NGG5 319 aa5.29□□□□□ -1.56
CLIP1-217ENST00000543205 FBLIM1Q8WUP2 373 aa5.29□□□□□ -1.56
CLIP1-217ENST00000543205 CPA5Q8WXQ8 436 aa5.29□□□□□ -1.56
CLIP1-217ENST00000543205 ZSWIM3Q96MP5 696 aa5.29□□□□□ -1.56
CLIP1-217ENST00000543205 CPXM1Q96SM3 734 aa5.29□□□□□ -1.56
CLIP1-217ENST00000543205 CDK5RAP1Q96SZ6 601 aaKnown RBP5.29□□□□□ -1.56
CLIP1-217ENST00000543205 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP5.29□□□□□ -1.56
CLIP1-217ENST00000543205 SLC46A2Q9BY10 475 aa5.29□□□□□ -1.56
CLIP1-217ENST00000543205 ULBP1Q9BZM6 244 aa5.29□□□□□ -1.56
CLIP1-217ENST00000543205 TRIT1Q9H3H1 467 aaKnown RBP5.29□□□□□ -1.56
CLIP1-217ENST00000543205 CAMSAP3Q9P1Y5 1249 aaPredicted RBP5.29□□□□□ -1.56
CLIP1-217ENST00000543205 CYTH4Q9UIA0 394 aa5.29□□□□□ -1.56
CLIP1-217ENST00000543205 PCDHGB2Q9Y5G2 931 aa5.29□□□□□ -1.56
CLIP1-217ENST00000543205 ANKRD34BA5PLL1 514 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 TRIM64A6NGJ6 449 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 TRIM64BA6NI03 449 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 GOLGA6L6A8MZA4 724 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 LOC730098B7Z3J9 87 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 E5RJQ4 531 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 FANCGO15287 622 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 FRS3O43559 492 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 MFAP3LO75121 409 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 TADA3O75528 432 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 CYP1A1P04798 512 aaPredicted RBP5.28□□□□□ -1.56
CLIP1-217ENST00000543205 CKMP06732 381 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 ZDHHC11BP0C7U3 371 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 MBL2P11226 248 aaPredicted RBP5.28□□□□□ -1.56
CLIP1-217ENST00000543205 RARGP13631 454 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 PFKLP17858 780 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 MAP4P27816 1152 aaKnown RBP5.28□□□□□ -1.56
CLIP1-217ENST00000543205 CDH5P33151 784 aaPredicted RBP5.28□□□□□ -1.56
CLIP1-217ENST00000543205 PRKCIP41743 596 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 RPL34P49207 117 aaKnown RBP5.28□□□□□ -1.56
CLIP1-217ENST00000543205 BTKQ06187 659 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 RING1Q06587 406 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 CLEC16AQ2KHT3 1053 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 FAM78AQ5JUQ0 283 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 TMEM31Q5JXX7 168 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 DGKKQ5KSL6 1271 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 SNX30Q5VWJ9 437 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 OR6B2Q6IFH4 312 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 PPP1R2P3Q6NXS1 205 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 ZNF571Q7Z3V5 609 aaPredicted RBP5.28□□□□□ -1.56
CLIP1-217ENST00000543205 ARID3BQ8IVW6 561 aaPredicted RBP5.28□□□□□ -1.56
CLIP1-217ENST00000543205 FAM20CQ8IXL6 584 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 ARL14EPQ8N8R7 260 aaPredicted RBP5.28□□□□□ -1.56
CLIP1-217ENST00000543205 CLEC4CQ8WTT0 213 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 ZFPM2Q8WW38 1151 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 IRGQQ8WZA9 623 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 NDRG1Q92597 394 aaKnown RBP5.28□□□□□ -1.56
CLIP1-217ENST00000543205 JADE3Q92613 823 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 CENPIQ92674 756 aaPredicted RBP5.28□□□□□ -1.56
CLIP1-217ENST00000543205 SMARCD2Q92925 531 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 PTPRN2Q92932 1015 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 USP13Q92995 863 aaPredicted RBP5.28□□□□□ -1.56
CLIP1-217ENST00000543205 ISL2Q96A47 359 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 FAM149B1Q96BN6 582 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 C18orf8Q96DM3 657 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 CYP2S1Q96SQ9 504 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 PCDHB18PQ96TA0 734 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 WNT10AQ9GZT5 417 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 MS4A5Q9H3V2 200 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 GRPEL1Q9HAV7 217 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 ZFP14Q9HCL3 533 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 TPSG1Q9NRR2 321 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 GPR34Q9UPC5 381 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 YJEFN3A6XGL0 299 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 TMCO5BA8MYB1 307 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 E7ENQ6 273 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 CAPN9O14815 690 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 COCHO43405 550 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 TUSC2O75896 110 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 OAS1P00973 400 aaKnown RBP5.28□□□□□ -1.56
CLIP1-217ENST00000543205 ERBB2P04626 1255 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 CALB1P05937 261 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 UNGP13051 313 aaPredicted RBP5.28□□□□□ -1.56
CLIP1-217ENST00000543205 ITGB7P26010 798 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 HNRNPH3P31942 346 aaKnown RBP5.28□□□□□ -1.56
CLIP1-217ENST00000543205 ATP5C1P36542 298 aaKnown RBP5.28□□□□□ -1.56
CLIP1-217ENST00000543205 LSSP48449 732 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 PGFP49763 221 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 DAOAP59103 153 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 NOMO3P69849 1222 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 GOLGA8FQ08AF8 430 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 GOLGA8DPQ0D2H9 430 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 GALNT1Q10472 559 aaPredicted RBP5.28□□□□□ -1.56
CLIP1-217ENST00000543205 DOC2BQ14184 412 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 PTPN20Q4JDL3 420 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 EFHC1Q5JVL4 640 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 C10orf120Q5SQS8 335 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 BSPRYQ5W0U4 402 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 E4F1Q66K89 784 aaPredicted RBP5.28□□□□□ -1.56
CLIP1-217ENST00000543205 ACAD10Q6JQN1 1059 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 PARM1Q6UWI2 310 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 ARHGAP30Q7Z6I6 1101 aaPredicted RBP5.28□□□□□ -1.56
CLIP1-217ENST00000543205 SCD5Q86SK9 330 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 ZDHHC17Q8IUH5 632 aa5.28□□□□□ -1.56
CLIP1-217ENST00000543205 YAF2Q8IY57 180 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms