RNA–Protein interactions for RNA: ENST00000542817.1

NPIPB3-210, Transcript of nuclear pore complex interacting protein family member B3, human

TSL 5 BASIC

Gene NPIPB3, Length 1,342 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NPIPB3-210	ENST00000542817	NOD2	Q9HC29	1040 aa		10.84	□□□□□ -0.67
NPIPB3-210	ENST00000542817	SEPT3	Q9UH03	358 aa		10.84	□□□□□ -0.67
NPIPB3-210	ENST00000542817	ZNF318	Q5VUA4	2279 aa		10.83	□□□□□ -0.68
NPIPB3-210	ENST00000542817	EDDM13	A0A1B0GTR0	161 aa		10.83	□□□□□ -0.68
NPIPB3-210	ENST00000542817	TARSL2	A2RTX5	802 aa	Known RBP	10.83	□□□□□ -0.68
NPIPB3-210	ENST00000542817		K7ESF4	209 aa		10.83	□□□□□ -0.68
NPIPB3-210	ENST00000542817	KCNN4	O15554	427 aa		10.83	□□□□□ -0.68
NPIPB3-210	ENST00000542817	PHF2	O75151	1096 aa		10.83	□□□□□ -0.68
NPIPB3-210	ENST00000542817	GCAT	O75600	419 aa		10.83	□□□□□ -0.68
NPIPB3-210	ENST00000542817	METTL18	O95568	372 aa		10.83	□□□□□ -0.68
NPIPB3-210	ENST00000542817	GSR	P00390	522 aa		10.83	□□□□□ -0.68
NPIPB3-210	ENST00000542817	EPHX1	P07099	455 aa		10.83	□□□□□ -0.68
NPIPB3-210	ENST00000542817	CSNK1D	P48730	415 aa		10.83	□□□□□ -0.68
NPIPB3-210	ENST00000542817	RENBP	P51606	427 aa		10.83	□□□□□ -0.68
NPIPB3-210	ENST00000542817	CCNH	P51946	323 aa	Predicted RBP	10.83	□□□□□ -0.68
NPIPB3-210	ENST00000542817	GEMIN4	P57678	1058 aa	Known RBP	10.83	□□□□□ -0.68
NPIPB3-210	ENST00000542817	SATB1	Q01826	763 aa		10.83	□□□□□ -0.68
NPIPB3-210	ENST00000542817	DSC2	Q02487	901 aa		10.83	□□□□□ -0.68
NPIPB3-210	ENST00000542817	MYLK3	Q32MK0	819 aa		10.83	□□□□□ -0.68
NPIPB3-210	ENST00000542817	CARD16	Q5EG05	197 aa		10.83	□□□□□ -0.68
NPIPB3-210	ENST00000542817	DNTTIP2	Q5QJE6	756 aa	Known RBP	10.83	□□□□□ -0.68
NPIPB3-210	ENST00000542817	NCEH1	Q6PIU2	408 aa		10.83	□□□□□ -0.68
NPIPB3-210	ENST00000542817	NUDT18	Q6ZVK8	323 aa		10.83	□□□□□ -0.68
NPIPB3-210	ENST00000542817	ZSWIM9	Q86XI8	627 aa		10.83	□□□□□ -0.68
NPIPB3-210	ENST00000542817	STK40	Q8N2I9	435 aa		10.83	□□□□□ -0.68
NPIPB3-210	ENST00000542817	SPEM1	Q8N4L4	309 aa		10.83	□□□□□ -0.68
NPIPB3-210	ENST00000542817	OR2AP1	Q8NGE2	309 aa		10.83	□□□□□ -0.68
NPIPB3-210	ENST00000542817	OR6K2	Q8NGY2	324 aa		10.83	□□□□□ -0.68
NPIPB3-210	ENST00000542817	CCDC110	Q8TBZ0	833 aa		10.83	□□□□□ -0.68
NPIPB3-210	ENST00000542817	MAIP1	Q8WWC4	291 aa		10.83	□□□□□ -0.68
NPIPB3-210	ENST00000542817	IMP4	Q96G21	291 aa	Known RBP	10.83	□□□□□ -0.68
NPIPB3-210	ENST00000542817	OXNAD1	Q96HP4	312 aa	Predicted RBP	10.83	□□□□□ -0.68
NPIPB3-210	ENST00000542817	SPATA13	Q96N96	652 aa		10.83	□□□□□ -0.68
NPIPB3-210	ENST00000542817	AGAP3	Q96P47	875 aa		10.83	□□□□□ -0.68
NPIPB3-210	ENST00000542817	NAP1L3	Q99457	506 aa	Predicted RBP	10.83	□□□□□ -0.68
NPIPB3-210	ENST00000542817	GLOD4	Q9HC38	313 aa		10.83	□□□□□ -0.68
NPIPB3-210	ENST00000542817	NT5M	Q9NPB1	228 aa		10.83	□□□□□ -0.68
NPIPB3-210	ENST00000542817	OGFR	Q9NZT2	677 aa		10.83	□□□□□ -0.68
NPIPB3-210	ENST00000542817	AMACR	Q9UHK6	382 aa		10.83	□□□□□ -0.68
NPIPB3-210	ENST00000542817	PPM1H	Q9ULR3	514 aa		10.83	□□□□□ -0.68
NPIPB3-210	ENST00000542817	FAM86C2P	A6NEL3	165 aa		10.82	□□□□□ -0.68
NPIPB3-210	ENST00000542817	C10orf142	B7Z368	130 aa		10.82	□□□□□ -0.68
NPIPB3-210	ENST00000542817	TRAFD1	O14545	582 aa	Predicted RBP	10.82	□□□□□ -0.68
NPIPB3-210	ENST00000542817	TP73	O15350	636 aa		10.82	□□□□□ -0.68
NPIPB3-210	ENST00000542817	PAPSS2	O95340	614 aa	Predicted RBP	10.82	□□□□□ -0.68
NPIPB3-210	ENST00000542817	PRL	P01236	227 aa		10.82	□□□□□ -0.68
NPIPB3-210	ENST00000542817	HOXB2	P14652	356 aa		10.82	□□□□□ -0.68
NPIPB3-210	ENST00000542817	RPL22	P35268	128 aa	Known RBP	10.82	□□□□□ -0.68
NPIPB3-210	ENST00000542817	FNTA	P49354	379 aa		10.82	□□□□□ -0.68
NPIPB3-210	ENST00000542817	RHOA	P61586	193 aa		10.82	□□□□□ -0.68
NPIPB3-210	ENST00000542817	SKOR1	P84550	965 aa		10.82	□□□□□ -0.68
NPIPB3-210	ENST00000542817	C2orf54	Q08AI8	447 aa		10.82	□□□□□ -0.68
NPIPB3-210	ENST00000542817	WHAMMP3	Q1A5X7	153 aa		10.82	□□□□□ -0.68
NPIPB3-210	ENST00000542817	ACCSL	Q4AC99	568 aa		10.82	□□□□□ -0.68
NPIPB3-210	ENST00000542817	ANKRD20A2	Q5SQ80	823 aa		10.82	□□□□□ -0.68
NPIPB3-210	ENST00000542817	ANKRD20A1	Q5TYW2	823 aa		10.82	□□□□□ -0.68
NPIPB3-210	ENST00000542817	ANKRD20A3	Q5VUR7	823 aa		10.82	□□□□□ -0.68
NPIPB3-210	ENST00000542817	HEATR6	Q6AI08	1181 aa	Known RBP	10.82	□□□□□ -0.68
NPIPB3-210	ENST00000542817	CCDC137	Q6PK04	289 aa	Known RBP	10.82	□□□□□ -0.68
NPIPB3-210	ENST00000542817	KDELC1	Q6UW63	502 aa		10.82	□□□□□ -0.68
NPIPB3-210	ENST00000542817	SRL	Q86TD4	932 aa		10.82	□□□□□ -0.68
NPIPB3-210	ENST00000542817	METTL3	Q86U44	580 aa	Known RBP	10.82	□□□□□ -0.68
NPIPB3-210	ENST00000542817	ATL2	Q8NHH9	583 aa		10.82	□□□□□ -0.68
NPIPB3-210	ENST00000542817	SLCO2A1	Q92959	643 aa		10.82	□□□□□ -0.68
NPIPB3-210	ENST00000542817	PBXIP1	Q96AQ6	731 aa		10.82	□□□□□ -0.68
NPIPB3-210	ENST00000542817	FAM131C	Q96AQ9	280 aa		10.82	□□□□□ -0.68
NPIPB3-210	ENST00000542817	NUDCD1	Q96RS6	583 aa		10.82	□□□□□ -0.68
NPIPB3-210	ENST00000542817	SEMA3C	Q99985	751 aa		10.82	□□□□□ -0.68
NPIPB3-210	ENST00000542817	MLPH	Q9BV36	600 aa	Predicted RBP	10.82	□□□□□ -0.68
NPIPB3-210	ENST00000542817	CINP	Q9BW66	212 aa	Predicted RBP	10.82	□□□□□ -0.68
NPIPB3-210	ENST00000542817	SLC25A51	Q9H1U9	297 aa		10.82	□□□□□ -0.68
NPIPB3-210	ENST00000542817	RSPH9	Q9H1X1	276 aa	Predicted RBP	10.82	□□□□□ -0.68
NPIPB3-210	ENST00000542817	CD93	Q9NPY3	652 aa		10.82	□□□□□ -0.68
NPIPB3-210	ENST00000542817	HOMER3	Q9NSC5	361 aa		10.82	□□□□□ -0.68
NPIPB3-210	ENST00000542817	SEPT10	Q9P0V9	454 aa		10.82	□□□□□ -0.68
NPIPB3-210	ENST00000542817	SUN2	Q9UH99	717 aa		10.82	□□□□□ -0.68
NPIPB3-210	ENST00000542817	PCYOX1	Q9UHG3	505 aa		10.82	□□□□□ -0.68
NPIPB3-210	ENST00000542817	EVL	Q9UI08	416 aa	Predicted RBP	10.82	□□□□□ -0.68
NPIPB3-210	ENST00000542817	ZNF148	Q9UQR1	794 aa		10.82	□□□□□ -0.68
NPIPB3-210	ENST00000542817	BHMG1	C9JSJ3	638 aa	Predicted RBP	10.81	□□□□□ -0.68
NPIPB3-210	ENST00000542817	STK25	O00506	426 aa		10.81	□□□□□ -0.68
NPIPB3-210	ENST00000542817	SPINT1	O43278	529 aa		10.81	□□□□□ -0.68
NPIPB3-210	ENST00000542817	MTSS1	O43312	755 aa		10.81	□□□□□ -0.68
NPIPB3-210	ENST00000542817	HTRA2	O43464	458 aa	Predicted RBP	10.81	□□□□□ -0.68
NPIPB3-210	ENST00000542817	FZD6	O60353	706 aa		10.81	□□□□□ -0.68
NPIPB3-210	ENST00000542817	PIGN	O95427	931 aa		10.81	□□□□□ -0.68
NPIPB3-210	ENST00000542817	MT-CYB	P00156	380 aa	Predicted RBP	10.81	□□□□□ -0.68
NPIPB3-210	ENST00000542817	GABRG2	P18507	467 aa		10.81	□□□□□ -0.68
NPIPB3-210	ENST00000542817	NDUFV2	P19404	249 aa		10.81	□□□□□ -0.68
NPIPB3-210	ENST00000542817	NFKB1	P19838	968 aa		10.81	□□□□□ -0.68
NPIPB3-210	ENST00000542817	IVD	P26440	423 aa		10.81	□□□□□ -0.68
NPIPB3-210	ENST00000542817	STIP1	P31948	543 aa	Known RBP	10.81	□□□□□ -0.68
NPIPB3-210	ENST00000542817	CHRNA3	P32297	505 aa		10.81	□□□□□ -0.68
NPIPB3-210	ENST00000542817	DRD3	P35462	400 aa		10.81	□□□□□ -0.68
NPIPB3-210	ENST00000542817	HSPA9	P38646	679 aa	Known RBP	10.81	□□□□□ -0.68
NPIPB3-210	ENST00000542817	ST8SIA6	P61647	398 aa		10.81	□□□□□ -0.68
NPIPB3-210	ENST00000542817	RPS14	P62263	151 aa	Known RBP	10.81	□□□□□ -0.68
NPIPB3-210	ENST00000542817	MRPS25	P82663	173 aa	Known RBP	10.81	□□□□□ -0.68
NPIPB3-210	ENST00000542817	TRAF2	Q12933	501 aa		10.81	□□□□□ -0.68
NPIPB3-210	ENST00000542817	ELAVL3	Q14576	367 aa	Known RBP	10.81	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms