RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 RP1P56715 2156 aa13.82□□□□□ -0.2
SS18-204ENST00000539244 EME2A4GXA9 379 aaPredicted RBP13.82□□□□□ -0.2
SS18-204ENST00000539244 AQP9O43315 295 aa13.82□□□□□ -0.2
SS18-204ENST00000539244 TSPAN6O43657 245 aa13.82□□□□□ -0.2
SS18-204ENST00000539244 ENDOD1O94919 500 aa13.82□□□□□ -0.2
SS18-204ENST00000539244 ZIC2O95409 532 aaPredicted RBP13.82□□□□□ -0.2
SS18-204ENST00000539244 PNMA6AP0CW24 399 aaPredicted RBP13.82□□□□□ -0.2
SS18-204ENST00000539244 TGM2P21980 687 aa13.82□□□□□ -0.2
SS18-204ENST00000539244 FLT3P36888 993 aa13.82□□□□□ -0.2
SS18-204ENST00000539244 PFN3P60673 137 aa13.82□□□□□ -0.2
SS18-204ENST00000539244 GNA12Q03113 381 aa13.82□□□□□ -0.2
SS18-204ENST00000539244 MAPK8IP2Q13387 824 aaPredicted RBP13.82□□□□□ -0.2
SS18-204ENST00000539244 FAM102AQ5T9C2 384 aaPredicted RBP13.82□□□□□ -0.2
SS18-204ENST00000539244 TRNP1Q6NT89 227 aa13.82□□□□□ -0.2
SS18-204ENST00000539244 PARS2Q7L3T8 475 aaKnown RBP13.82□□□□□ -0.2
SS18-204ENST00000539244 CREBRFQ8IUR6 639 aa13.82□□□□□ -0.2
SS18-204ENST00000539244 TPCN2Q8NHX9 752 aa13.82□□□□□ -0.2
SS18-204ENST00000539244 MAPK15Q8TD08 544 aa13.82□□□□□ -0.2
SS18-204ENST00000539244 KCNE4Q8WWG9 221 aa13.82□□□□□ -0.2
SS18-204ENST00000539244 VOPP1Q96AW1 172 aa13.82□□□□□ -0.2
SS18-204ENST00000539244 NAF1Q96HR8 494 aaKnown RBP13.82□□□□□ -0.2
SS18-204ENST00000539244 TBATAQ96M53 351 aa13.82□□□□□ -0.2
SS18-204ENST00000539244 SPON2Q9BUD6 331 aa13.82□□□□□ -0.2
SS18-204ENST00000539244 RETREG1Q9H6L5 497 aa13.82□□□□□ -0.2
SS18-204ENST00000539244 ATP13A1Q9HD20 1204 aa13.82□□□□□ -0.2
SS18-204ENST00000539244 KIAA1468Q9P260 1216 aa13.82□□□□□ -0.2
SS18-204ENST00000539244 TMEM59LQ9UK28 342 aa13.82□□□□□ -0.2
SS18-204ENST00000539244 A0A1W2PNU3 283 aaPredicted RBP13.81□□□□□ -0.2
SS18-204ENST00000539244 FPGTO14772 594 aa13.81□□□□□ -0.2
SS18-204ENST00000539244 SPINT1O43278 529 aa13.81□□□□□ -0.2
SS18-204ENST00000539244 SRGAP2O75044 1071 aa13.81□□□□□ -0.2
SS18-204ENST00000539244 GADD45BO75293 160 aaPredicted RBP13.81□□□□□ -0.2
SS18-204ENST00000539244 TCEA3O75764 348 aa13.81□□□□□ -0.2
SS18-204ENST00000539244 CYP11B1P15538 503 aa13.81□□□□□ -0.2
SS18-204ENST00000539244 JUNDP17535 347 aa13.81□□□□□ -0.2
SS18-204ENST00000539244 NRG1Q02297 640 aaPredicted RBP13.81□□□□□ -0.2
SS18-204ENST00000539244 PDE1CQ14123 709 aaPredicted RBP13.81□□□□□ -0.2
SS18-204ENST00000539244 BECN1Q14457 450 aa13.81□□□□□ -0.2
SS18-204ENST00000539244 MAN2A1Q16706 1144 aa13.81□□□□□ -0.2
SS18-204ENST00000539244 TPRG1LQ5T0D9 272 aa13.81□□□□□ -0.2
SS18-204ENST00000539244 MANEALQ5VSG8 457 aa13.81□□□□□ -0.2
SS18-204ENST00000539244 GUSBP11Q6P575 273 aa13.81□□□□□ -0.2
SS18-204ENST00000539244 VCPIP1Q96JH7 1222 aa13.81□□□□□ -0.2
SS18-204ENST00000539244 SLC46A1Q96NT5 459 aa13.81□□□□□ -0.2
SS18-204ENST00000539244 BOCQ9BWV1 1114 aa13.81□□□□□ -0.2
SS18-204ENST00000539244 CPNE5Q9HCH3 593 aa13.81□□□□□ -0.2
SS18-204ENST00000539244 HECAQ9UBI9 543 aaPredicted RBP13.81□□□□□ -0.2
SS18-204ENST00000539244 FCF1Q9Y324 198 aaKnown RBP13.81□□□□□ -0.2
SS18-204ENST00000539244 PCDHGA8Q9Y5G5 932 aa13.81□□□□□ -0.2
SS18-204ENST00000539244 IGLON5A6NGN9 336 aa13.8□□□□□ -0.2
SS18-204ENST00000539244 C16orf96A6NNT2 1141 aa13.8□□□□□ -0.2
SS18-204ENST00000539244 LSM8O95777 96 aaKnown RBP13.8□□□□□ -0.2
SS18-204ENST00000539244 ETFBP38117 255 aa13.8□□□□□ -0.2
SS18-204ENST00000539244 ABL2P42684 1182 aa13.8□□□□□ -0.2
SS18-204ENST00000539244 MTIF2P46199 727 aaKnown RBP13.8□□□□□ -0.2
SS18-204ENST00000539244 GEMIN4P57678 1058 aaKnown RBP13.8□□□□□ -0.2
SS18-204ENST00000539244 EIF2B5Q13144 721 aaKnown RBP13.8□□□□□ -0.2
SS18-204ENST00000539244 SGCGQ13326 291 aa13.8□□□□□ -0.2
SS18-204ENST00000539244 CDKN3Q16667 212 aa13.8□□□□□ -0.2
SS18-204ENST00000539244 KIF26BQ2KJY2 2108 aa13.8□□□□□ -0.2
SS18-204ENST00000539244 TAF1BQ53T94 588 aaPredicted RBP13.8□□□□□ -0.2
SS18-204ENST00000539244 ZNF805Q5CZA5 627 aa13.8□□□□□ -0.2
SS18-204ENST00000539244 EFL1Q7Z2Z2 1120 aaKnown RBP13.8□□□□□ -0.2
SS18-204ENST00000539244 FAM131BQ86XD5 332 aa13.8□□□□□ -0.2
SS18-204ENST00000539244 WDR48Q8TAF3 677 aa13.8□□□□□ -0.2
SS18-204ENST00000539244 BTN2A2Q8WVV5 523 aa13.8□□□□□ -0.2
SS18-204ENST00000539244 TTC9Q92623 222 aa13.8□□□□□ -0.2
SS18-204ENST00000539244 CENPTQ96BT3 561 aa13.8□□□□□ -0.2
SS18-204ENST00000539244 ARHGEF26Q96DR7 871 aa13.8□□□□□ -0.2
SS18-204ENST00000539244 PRR11Q96HE9 360 aaPredicted RBP13.8□□□□□ -0.2
SS18-204ENST00000539244 CFAP57Q96MR6 1250 aa13.8□□□□□ -0.2
SS18-204ENST00000539244 IL12RB2Q99665 862 aa13.8□□□□□ -0.2
SS18-204ENST00000539244 OSBPL2Q9H1P3 480 aa13.8□□□□□ -0.2
SS18-204ENST00000539244 ZDHHC6Q9H6R6 413 aa13.8□□□□□ -0.2
SS18-204ENST00000539244 IPO11Q9UI26 975 aaKnown RBP13.8□□□□□ -0.2
SS18-204ENST00000539244 SATB2Q9UPW6 733 aa13.8□□□□□ -0.2
SS18-204ENST00000539244 ENTPD2Q9Y5L3 495 aa13.8□□□□□ -0.2
SS18-204ENST00000539244 ACTL7AQ9Y615 435 aa13.8□□□□□ -0.2
SS18-204ENST00000539244 CDRT15L2A8MXV6 281 aa13.79□□□□□ -0.2
SS18-204ENST00000539244 AREL1O15033 823 aa13.79□□□□□ -0.2
SS18-204ENST00000539244 KLK10O43240 276 aa13.79□□□□□ -0.2
SS18-204ENST00000539244 GSRP00390 522 aa13.79□□□□□ -0.2
SS18-204ENST00000539244 PRKCSHP14314 528 aaPredicted RBP13.79□□□□□ -0.2
SS18-204ENST00000539244 MLLT3P42568 568 aaPredicted RBP13.79□□□□□ -0.2
SS18-204ENST00000539244 MAPKAPK2P49137 400 aa13.79□□□□□ -0.2
SS18-204ENST00000539244 DNA2P51530 1060 aa13.79□□□□□ -0.2
SS18-204ENST00000539244 VAC14Q08AM6 782 aa13.79□□□□□ -0.2
SS18-204ENST00000539244 PTK2BQ14289 1009 aa13.79□□□□□ -0.2
SS18-204ENST00000539244 DRAP1Q14919 205 aaPredicted RBP13.79□□□□□ -0.2
SS18-204ENST00000539244 NR0B2Q15466 257 aa13.79□□□□□ -0.2
SS18-204ENST00000539244 DEFB133Q30KQ1 61 aa13.79□□□□□ -0.2
SS18-204ENST00000539244 C3orf38Q5JPI3 329 aa13.79□□□□□ -0.2
SS18-204ENST00000539244 MIIPQ5JXC2 388 aa13.79□□□□□ -0.2
SS18-204ENST00000539244 ARHGAP40Q5TG30 622 aa13.79□□□□□ -0.2
SS18-204ENST00000539244 RBM44Q6ZP01 1051 aaKnown RBP13.79□□□□□ -0.2
SS18-204ENST00000539244 NLRP14Q86W24 1093 aa13.79□□□□□ -0.2
SS18-204ENST00000539244 DRC7Q8IY82 874 aa13.79□□□□□ -0.2
SS18-204ENST00000539244 MLKLQ8NB16 471 aa13.79□□□□□ -0.2
SS18-204ENST00000539244 MSANTD4Q8NCY6 345 aa13.79□□□□□ -0.2
SS18-204ENST00000539244 OR2AP1Q8NGE2 309 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms