RNA–Protein interactions for RNA: ENST00000535717.1

CHD4-203, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 2

Gene CHD4, Length 660 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-203ENST00000535717 ARSIQ5FYB1 569 aa12.24□□□□□ -0.45
CHD4-203ENST00000535717 CCDC181Q5TID7 509 aa12.24□□□□□ -0.45
CHD4-203ENST00000535717 MARC1Q5VT66 337 aa12.24□□□□□ -0.45
CHD4-203ENST00000535717 TIGD7Q6NT04 549 aaPredicted RBP12.24□□□□□ -0.45
CHD4-203ENST00000535717 BZW1Q7L1Q6 419 aaKnown RBP12.24□□□□□ -0.45
CHD4-203ENST00000535717 CCDC13Q8IYE1 715 aa12.24□□□□□ -0.45
CHD4-203ENST00000535717 C17orf53Q8N3J3 647 aaPredicted RBP12.24□□□□□ -0.45
CHD4-203ENST00000535717 PGBD5Q8N414 524 aa12.24□□□□□ -0.45
CHD4-203ENST00000535717 AADATQ8N5Z0 425 aa12.24□□□□□ -0.45
CHD4-203ENST00000535717 TEX26Q8N6G2 289 aa12.24□□□□□ -0.45
CHD4-203ENST00000535717 TMIEQ8NEW7 156 aa12.24□□□□□ -0.45
CHD4-203ENST00000535717 PIP4K2CQ8TBX8 421 aa12.24□□□□□ -0.45
CHD4-203ENST00000535717 ACTL9Q8TC94 416 aa12.24□□□□□ -0.45
CHD4-203ENST00000535717 GRIN3AQ8TCU5 1115 aa12.24□□□□□ -0.45
CHD4-203ENST00000535717 NSMCE1Q8WV22 266 aa12.24□□□□□ -0.45
CHD4-203ENST00000535717 GAB3Q8WWW8 586 aa12.24□□□□□ -0.45
CHD4-203ENST00000535717 BRD8Q9H0E9 1235 aa12.24□□□□□ -0.45
CHD4-203ENST00000535717 CARD9Q9H257 536 aa12.24□□□□□ -0.45
CHD4-203ENST00000535717 ZDHHC6Q9H6R6 413 aa12.24□□□□□ -0.45
CHD4-203ENST00000535717 KCND1Q9NSA2 647 aa12.24□□□□□ -0.45
CHD4-203ENST00000535717 FAM86C1Q9NVL1 165 aa12.24□□□□□ -0.45
CHD4-203ENST00000535717 SERGEFQ9UGK8 458 aa12.24□□□□□ -0.45
CHD4-203ENST00000535717 EVLQ9UI08 416 aaPredicted RBP12.24□□□□□ -0.45
CHD4-203ENST00000535717 MBD1Q9UIS9 605 aaPredicted RBP12.24□□□□□ -0.45
CHD4-203ENST00000535717 SCML1Q9UN30 329 aa12.24□□□□□ -0.45
CHD4-203ENST00000535717 JRKLQ9Y4A0 524 aa12.24□□□□□ -0.45
CHD4-203ENST00000535717 IGHV1OR15-9A0A0B4J2B8 117 aa12.23□□□□□ -0.45
CHD4-203ENST00000535717 TTC24A2A3L6 582 aaPredicted RBP12.23□□□□□ -0.45
CHD4-203ENST00000535717 C1QTNF3-AMACRE9PGA6 284 aa12.23□□□□□ -0.45
CHD4-203ENST00000535717 KCNK1O00180 336 aa12.23□□□□□ -0.45
CHD4-203ENST00000535717 PLK4O00444 970 aa12.23□□□□□ -0.45
CHD4-203ENST00000535717 PRNPP04156 253 aa12.23□□□□□ -0.45
CHD4-203ENST00000535717 CCNB1P14635 433 aa12.23□□□□□ -0.45
CHD4-203ENST00000535717 BCKDHBP21953 392 aa12.23□□□□□ -0.45
CHD4-203ENST00000535717 DRD3P35462 400 aa12.23□□□□□ -0.45
CHD4-203ENST00000535717 CSNK1DP48730 415 aa12.23□□□□□ -0.45
CHD4-203ENST00000535717 RENBPP51606 427 aa12.23□□□□□ -0.45
CHD4-203ENST00000535717 OTUD4Q01804 1114 aaKnown RBP12.23□□□□□ -0.45
CHD4-203ENST00000535717 ZNF33AQ06730 810 aa12.23□□□□□ -0.45
CHD4-203ENST00000535717 NSUN2Q08J23 767 aaKnown RBP eCLIP12.23□□□□□ -0.45
CHD4-203ENST00000535717 BYSLQ13895 437 aaKnown RBP12.23□□□□□ -0.45
CHD4-203ENST00000535717 HNRNPDQ14103 355 aaKnown RBP12.23□□□□□ -0.45
CHD4-203ENST00000535717 PRKD1Q15139 912 aaPredicted RBP12.23□□□□□ -0.45
CHD4-203ENST00000535717 NOMO1Q15155 1222 aa12.23□□□□□ -0.45
CHD4-203ENST00000535717 TTC31Q49AM3 519 aaPredicted RBP12.23□□□□□ -0.45
CHD4-203ENST00000535717 SEL1L2Q5TEA6 688 aa12.23□□□□□ -0.45
CHD4-203ENST00000535717 FAM46CQ5VWP2 391 aa12.23□□□□□ -0.45
CHD4-203ENST00000535717 ZC3H14Q6PJT7 736 aaKnown RBP12.23□□□□□ -0.45
CHD4-203ENST00000535717 MTERF4Q7Z6M4 381 aaKnown RBP12.23□□□□□ -0.45
CHD4-203ENST00000535717 SRLQ86TD4 932 aa12.23□□□□□ -0.45
CHD4-203ENST00000535717 FAM124AQ86V42 546 aa12.23□□□□□ -0.45
CHD4-203ENST00000535717 ZC3H18Q86VM9 953 aaKnown RBP12.23□□□□□ -0.45
CHD4-203ENST00000535717 TFB1MQ8WVM0 346 aaKnown RBP12.23□□□□□ -0.45
CHD4-203ENST00000535717 ARRDC3Q96B67 414 aa12.23□□□□□ -0.45
CHD4-203ENST00000535717 TRIM44Q96DX7 344 aaPredicted RBP12.23□□□□□ -0.45
CHD4-203ENST00000535717 NSMCE3Q96MG7 304 aa12.23□□□□□ -0.45
CHD4-203ENST00000535717 FAM118BQ9BPY3 351 aa12.23□□□□□ -0.45
CHD4-203ENST00000535717 NT5MQ9NPB1 228 aa12.23□□□□□ -0.45
CHD4-203ENST00000535717 FBXL12Q9NXK8 326 aa12.23□□□□□ -0.45
CHD4-203ENST00000535717 PLXND1Q9Y4D7 1925 aa12.23□□□□□ -0.45
CHD4-203ENST00000535717 A0A1W2PP55 124 aa12.22□□□□□ -0.45
CHD4-203ENST00000535717 KPNA3O00505 521 aaPredicted RBP12.22□□□□□ -0.45
CHD4-203ENST00000535717 RNASEH2AO75792 299 aaKnown RBP12.22□□□□□ -0.45
CHD4-203ENST00000535717 JCHAINP01591 159 aa12.22□□□□□ -0.45
CHD4-203ENST00000535717 ATP1A1P05023 1023 aaKnown RBP12.22□□□□□ -0.45
CHD4-203ENST00000535717 CXCR5P32302 372 aa12.22□□□□□ -0.45
CHD4-203ENST00000535717 HSPA9P38646 679 aaKnown RBP12.22□□□□□ -0.45
CHD4-203ENST00000535717 MAXP61244 160 aa12.22□□□□□ -0.45
CHD4-203ENST00000535717 IFI35P80217 286 aaPredicted RBP12.22□□□□□ -0.45
CHD4-203ENST00000535717 CNTN1Q12860 1018 aa12.22□□□□□ -0.45
CHD4-203ENST00000535717 ZBTB17Q13105 803 aa12.22□□□□□ -0.45
CHD4-203ENST00000535717 XRCC4Q13426 336 aa12.22□□□□□ -0.45
CHD4-203ENST00000535717 FAM182AQ5T1J6 154 aa12.22□□□□□ -0.45
CHD4-203ENST00000535717 GDPD4Q6W3E5 623 aa12.22□□□□□ -0.45
CHD4-203ENST00000535717 USP30Q70CQ3 517 aa12.22□□□□□ -0.45
CHD4-203ENST00000535717 SLC13A5Q86YT5 568 aaPredicted RBP12.22□□□□□ -0.45
CHD4-203ENST00000535717 BBS5Q8N3I7 341 aa12.22□□□□□ -0.45
CHD4-203ENST00000535717 HDDC3Q8N4P3 179 aa12.22□□□□□ -0.45
CHD4-203ENST00000535717 GANCQ8TET4 914 aa12.22□□□□□ -0.45
CHD4-203ENST00000535717 TOE1Q96GM8 510 aaKnown RBP12.22□□□□□ -0.45
CHD4-203ENST00000535717 LRIG1Q96JA1 1093 aa12.22□□□□□ -0.45
CHD4-203ENST00000535717 SPACA7Q96KW9 195 aa12.22□□□□□ -0.45
CHD4-203ENST00000535717 QKIQ96PU8 341 aaKnown RBP eCLIP12.22□□□□□ -0.45
CHD4-203ENST00000535717 IL12RB2Q99665 862 aa12.22□□□□□ -0.45
CHD4-203ENST00000535717 OMDQ99983 421 aa12.22□□□□□ -0.45
CHD4-203ENST00000535717 MGME1Q9BQP7 344 aa12.22□□□□□ -0.45
CHD4-203ENST00000535717 CEP41Q9BYV8 373 aa12.22□□□□□ -0.45
CHD4-203ENST00000535717 CPEB1Q9BZB8 566 aaKnown RBP12.22□□□□□ -0.45
CHD4-203ENST00000535717 NEUROG2Q9H2A3 272 aa12.22□□□□□ -0.45
CHD4-203ENST00000535717 C10orf88Q9H8K7 445 aa12.22□□□□□ -0.45
CHD4-203ENST00000535717 RBM22Q9NW64 420 aaKnown RBP eCLIP12.22□□□□□ -0.45
CHD4-203ENST00000535717 WSB2Q9NYS7 404 aaPredicted RBP12.22□□□□□ -0.45
CHD4-203ENST00000535717 R3HDM2Q9Y2K5 976 aaKnown RBP12.22□□□□□ -0.45
CHD4-203ENST00000535717 ZFHX2Q9C0A1 2572 aaPredicted RBP12.21□□□□□ -0.45
CHD4-203ENST00000535717 HACD1B0YJ81 288 aa12.21□□□□□ -0.45
CHD4-203ENST00000535717 H7C0C1 242 aa12.21□□□□□ -0.45
CHD4-203ENST00000535717 MAP3K13O43283 966 aa12.21□□□□□ -0.45
CHD4-203ENST00000535717 PIGNO95427 931 aa12.21□□□□□ -0.45
CHD4-203ENST00000535717 HLA-DQB2P05538 268 aa12.21□□□□□ -0.45
CHD4-203ENST00000535717 UGT2B4P06133 528 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms