RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	SPPL3	Q8TCT6	385 aa		2.97	□□□□□ -1.93
CD44-238	ENST00000534296	NUDCD2	Q8WVJ2	157 aa		2.97	□□□□□ -1.93
CD44-238	ENST00000534296	URB1-AS1	Q96HZ7	61 aa		2.97	□□□□□ -1.93
CD44-238	ENST00000534296	APOLD1	Q96LR9	279 aa		2.97	□□□□□ -1.93
CD44-238	ENST00000534296	TWSG1	Q9GZX9	223 aa		2.97	□□□□□ -1.93
CD44-238	ENST00000534296	ZHX3	Q9H4I2	956 aa		2.97	□□□□□ -1.93
CD44-238	ENST00000534296	TTC12	Q9H892	705 aa	Predicted RBP	2.97	□□□□□ -1.93
CD44-238	ENST00000534296	PLEKHB1	Q9UF11	243 aa	Predicted RBP	2.97	□□□□□ -1.93
CD44-238	ENST00000534296	DENND3	A2RUS2	1198 aa		2.96	□□□□□ -1.94
CD44-238	ENST00000534296	DDTL	A6NHG4	134 aa	Predicted RBP	2.96	□□□□□ -1.94
CD44-238	ENST00000534296	RRN3P2	A6NIE6	340 aa		2.96	□□□□□ -1.94
CD44-238	ENST00000534296	C4orf47	A7E2U8	309 aa		2.96	□□□□□ -1.94
CD44-238	ENST00000534296	KDM4E	B2RXH2	506 aa	Predicted RBP	2.96	□□□□□ -1.94
CD44-238	ENST00000534296	PRSS44	E7EML9	344 aa		2.96	□□□□□ -1.94
CD44-238	ENST00000534296	SLC28A2	O43868	658 aa		2.96	□□□□□ -1.94
CD44-238	ENST00000534296	KCNJ13	O60928	360 aa		2.96	□□□□□ -1.94
CD44-238	ENST00000534296	PAPSS2	O95340	614 aa	Predicted RBP	2.96	□□□□□ -1.94
CD44-238	ENST00000534296	CYP21A2	P08686	494 aa		2.96	□□□□□ -1.94
CD44-238	ENST00000534296	CSF1	P09603	554 aa		2.96	□□□□□ -1.94
CD44-238	ENST00000534296	FCGR1A	P12314	374 aa		2.96	□□□□□ -1.94
CD44-238	ENST00000534296	CKMT1A	P12532	417 aa		2.96	□□□□□ -1.94
CD44-238	ENST00000534296	ARSA	P15289	507 aa		2.96	□□□□□ -1.94
CD44-238	ENST00000534296	C21orf33	P30042	268 aa	Predicted RBP	2.96	□□□□□ -1.94
CD44-238	ENST00000534296	HOXA11	P31270	313 aa	Predicted RBP	2.96	□□□□□ -1.94
CD44-238	ENST00000534296	KRT9	P35527	623 aa		2.96	□□□□□ -1.94
CD44-238	ENST00000534296	AMT	P48728	403 aa		2.96	□□□□□ -1.94
CD44-238	ENST00000534296	ART1	P52961	327 aa		2.96	□□□□□ -1.94
CD44-238	ENST00000534296	GAS1	P54826	345 aa		2.96	□□□□□ -1.94
CD44-238	ENST00000534296		Q0VFX4	171 aa		2.96	□□□□□ -1.94
CD44-238	ENST00000534296	TBL3	Q12788	808 aa	Known RBP	2.96	□□□□□ -1.94
CD44-238	ENST00000534296	TRPC3	Q13507	836 aa		2.96	□□□□□ -1.94
CD44-238	ENST00000534296	KEAP1	Q14145	624 aa		2.96	□□□□□ -1.94
CD44-238	ENST00000534296	NFATC4	Q14934	902 aa		2.96	□□□□□ -1.94
CD44-238	ENST00000534296	IZUMO4	Q1ZYL8	232 aa		2.96	□□□□□ -1.94
CD44-238	ENST00000534296	FBXO47	Q5MNV8	452 aa		2.96	□□□□□ -1.94
CD44-238	ENST00000534296	CBWD5	Q5RIA9	395 aa		2.96	□□□□□ -1.94
CD44-238	ENST00000534296	ZNF324B	Q6AW86	544 aa	Predicted RBP	2.96	□□□□□ -1.94
CD44-238	ENST00000534296	GJB7	Q6PEY0	223 aa		2.96	□□□□□ -1.94
CD44-238	ENST00000534296	KLHL24	Q6TFL4	600 aa		2.96	□□□□□ -1.94
CD44-238	ENST00000534296		Q6ZSV7	163 aa		2.96	□□□□□ -1.94
CD44-238	ENST00000534296	ZMIZ2	Q8NF64	920 aa		2.96	□□□□□ -1.94
CD44-238	ENST00000534296	LINS1	Q8NG48	757 aa		2.96	□□□□□ -1.94
CD44-238	ENST00000534296	FAM216A	Q8WUB2	273 aa		2.96	□□□□□ -1.94
CD44-238	ENST00000534296	ATOH1	Q92858	354 aa	Predicted RBP	2.96	□□□□□ -1.94
CD44-238	ENST00000534296	TMEM18	Q96B42	140 aa		2.96	□□□□□ -1.94
CD44-238	ENST00000534296	RNF183	Q96D59	192 aa		2.96	□□□□□ -1.94
CD44-238	ENST00000534296	FAM84B	Q96KN1	310 aa	Predicted RBP	2.96	□□□□□ -1.94
CD44-238	ENST00000534296	COG8	Q96MW5	612 aa		2.96	□□□□□ -1.94
CD44-238	ENST00000534296	CAMK1G	Q96NX5	476 aa		2.96	□□□□□ -1.94
CD44-238	ENST00000534296	CTAGE1	Q96RT6	745 aa		2.96	□□□□□ -1.94
CD44-238	ENST00000534296	CD180	Q99467	661 aa		2.96	□□□□□ -1.94
CD44-238	ENST00000534296	MMTAG2	Q9BU76	263 aa	Known RBP	2.96	□□□□□ -1.94
CD44-238	ENST00000534296	LHPP	Q9H008	270 aa		2.96	□□□□□ -1.94
CD44-238	ENST00000534296	RIC8A	Q9NPQ8	531 aa		2.96	□□□□□ -1.94
CD44-238	ENST00000534296	ITM2C	Q9NQX7	267 aa		2.96	□□□□□ -1.94
CD44-238	ENST00000534296	ALKBH4	Q9NXW9	302 aa		2.96	□□□□□ -1.94
CD44-238	ENST00000534296	PROCR	Q9UNN8	238 aa		2.96	□□□□□ -1.94
CD44-238	ENST00000534296	PCDHGB3	Q9Y5G1	929 aa		2.96	□□□□□ -1.94
CD44-238	ENST00000534296	PRR23D1	E9PI22	279 aa	Predicted RBP	2.95	□□□□□ -1.94
CD44-238	ENST00000534296	STX16-NPEPL1	H3BU86	382 aa		2.95	□□□□□ -1.94
CD44-238	ENST00000534296	STX16	O14662	325 aa		2.95	□□□□□ -1.94
CD44-238	ENST00000534296	GUCY1B2	O75343	617 aa		2.95	□□□□□ -1.94
CD44-238	ENST00000534296	WDHD1	O75717	1129 aa	Predicted RBP	2.95	□□□□□ -1.94
CD44-238	ENST00000534296	MTA2	O94776	668 aa		2.95	□□□□□ -1.94
CD44-238	ENST00000534296	CLDN7	O95471	211 aa		2.95	□□□□□ -1.94
CD44-238	ENST00000534296	SERPINC1	P01008	464 aa		2.95	□□□□□ -1.94
CD44-238	ENST00000534296	PRR23D2	P0DMB1	279 aa	Predicted RBP	2.95	□□□□□ -1.94
CD44-238	ENST00000534296	VEGFA	P15692	232 aa	Predicted RBP	2.95	□□□□□ -1.94
CD44-238	ENST00000534296	GNLY	P22749	145 aa		2.95	□□□□□ -1.94
CD44-238	ENST00000534296	MYF6	P23409	242 aa		2.95	□□□□□ -1.94
CD44-238	ENST00000534296	AVPR2	P30518	371 aa		2.95	□□□□□ -1.94
CD44-238	ENST00000534296	MTNR1A	P48039	350 aa		2.95	□□□□□ -1.94
CD44-238	ENST00000534296	PEX5	P50542	639 aa		2.95	□□□□□ -1.94
CD44-238	ENST00000534296	RRP1	P56182	461 aa	Known RBP	2.95	□□□□□ -1.94
CD44-238	ENST00000534296	DSCR9	P59020	149 aa		2.95	□□□□□ -1.94
CD44-238	ENST00000534296	SEC61A1	P61619	476 aa	Known RBP	2.95	□□□□□ -1.94
CD44-238	ENST00000534296	YWHAZ	P63104	245 aa	Known RBP	2.95	□□□□□ -1.94
CD44-238	ENST00000534296	UBE3A	Q05086	875 aa		2.95	□□□□□ -1.94
CD44-238	ENST00000534296	ST3GAL1	Q11201	340 aa		2.95	□□□□□ -1.94
CD44-238	ENST00000534296	EDRF1	Q3B7T1	1238 aa		2.95	□□□□□ -1.94
CD44-238	ENST00000534296	PRAMEF19	Q5SWL8	479 aa		2.95	□□□□□ -1.94
CD44-238	ENST00000534296	ATG9B	Q674R7	924 aa		2.95	□□□□□ -1.94
CD44-238	ENST00000534296	C18orf65	Q6ZTR6	163 aa		2.95	□□□□□ -1.94
CD44-238	ENST00000534296	MOGAT3	Q86VF5	341 aa		2.95	□□□□□ -1.94
CD44-238	ENST00000534296	HSPH1	Q92598	858 aa		2.95	□□□□□ -1.94
CD44-238	ENST00000534296	RTP4	Q96DX8	246 aa		2.95	□□□□□ -1.94
CD44-238	ENST00000534296	MASTL	Q96GX5	879 aa		2.95	□□□□□ -1.94
CD44-238	ENST00000534296	TXNDC15	Q96J42	360 aa		2.95	□□□□□ -1.94
CD44-238	ENST00000534296	UBXN10	Q96LJ8	280 aa		2.95	□□□□□ -1.94
CD44-238	ENST00000534296	TBATA	Q96M53	351 aa		2.95	□□□□□ -1.94
CD44-238	ENST00000534296	CTDSP1	Q9GZU7	261 aa		2.95	□□□□□ -1.94
CD44-238	ENST00000534296	RMI1	Q9H9A7	625 aa		2.95	□□□□□ -1.94
CD44-238	ENST00000534296	IRAK4	Q9NWZ3	460 aa		2.95	□□□□□ -1.94
CD44-238	ENST00000534296	CD207	Q9UJ71	328 aa		2.95	□□□□□ -1.94
CD44-238	ENST00000534296	SLC13A4	Q9UKG4	626 aa		2.95	□□□□□ -1.94
CD44-238	ENST00000534296	PCDHGB1	Q9Y5G3	927 aa		2.95	□□□□□ -1.94
CD44-238	ENST00000534296	CLDN16	Q9Y5I7	305 aa		2.95	□□□□□ -1.94
CD44-238	ENST00000534296	LRRFIP2	Q9Y608	721 aa	Known RBP	2.95	□□□□□ -1.94
CD44-238	ENST00000534296		A0A0A0MQY5	61 aa		2.94	□□□□□ -1.94
CD44-238	ENST00000534296	IGHV4-28	A0A0C4DH34	117 aa		2.94	□□□□□ -1.94

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