RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 FOXRED1Q96CU9 486 aaPredicted RBP4.33□□□□□ -1.72
CD44-226ENST00000527889 TMEM176AQ96HP8 235 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 MS4A14Q96JA4 679 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 JMJD8Q96S16 334 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 CPXM1Q96SM3 734 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 OSBPL9Q96SU4 736 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 G6PC3Q9BUM1 346 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 SELENOOQ9BVL4 669 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 APOL5Q9BWW9 433 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 FTHL17Q9BXU8 183 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 SNX25Q9H3E2 840 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 POFUT1Q9H488 388 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 SLC38A7Q9NVC3 462 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 TBC1D13Q9NVG8 400 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 GDAP2Q9NXN4 497 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 UVRAGQ9P2Y5 699 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 TNFRSF10DQ9UBN6 386 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 ZNF69Q9UC07 566 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 DNAJB4Q9UDY4 337 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 ANAPC7Q9UJX3 599 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 GTF3C4Q9UKN8 822 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 TSPAN16Q9UKR8 245 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 AMFRQ9UKV5 643 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 TBX21Q9UL17 535 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 TMPRSS11EQ9UL52 423 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 SNX12Q9UMY4 172 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 JRKLQ9Y4A0 524 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 CEP83Q9Y592 693 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 SAR1BQ9Y6B6 198 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 USP9XQ93008 2570 aaPredicted RBP4.33□□□□□ -1.72
CD44-226ENST00000527889 CDH23Q9H251 3354 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 SCO2A0A1W2PP80 73 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 TCRBV5S1A1TA0A578 114 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 TBKBP1A7MCY6 615 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 INPPL1O15357 1258 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 CTIFO43310 598 aaKnown RBP4.32□□□□□ -1.72
CD44-226ENST00000527889 SPOPO43791 374 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 CEP104O60308 925 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 COQ9O75208 318 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 GRAP2O75791 330 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 KRT38O76015 456 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 B3GAT3O94766 335 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 TPPPO94811 219 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 LSM8O95777 96 aaKnown RBP4.32□□□□□ -1.72
CD44-226ENST00000527889 CXCL10P02778 98 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 ERBB2P04626 1255 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 CALB1P05937 261 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 CLTBP09497 229 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 MYBL1P10243 752 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 RPL17P18621 184 aaKnown RBP4.32□□□□□ -1.72
CD44-226ENST00000527889 COMTP21964 271 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 MMP8P22894 467 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 PAX7P23759 505 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 HTR1BP28222 390 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 PEX2P28328 305 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 TKTP29401 623 aaKnown RBP4.32□□□□□ -1.72
CD44-226ENST00000527889 OAS2P29728 719 aaKnown RBP4.32□□□□□ -1.72
CD44-226ENST00000527889 RPL9P32969 192 aaKnown RBP4.32□□□□□ -1.72
CD44-226ENST00000527889 GJC1P36383 396 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 PBX3P40426 434 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 GPD2P43304 727 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 OR1G1P47890 313 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 TRPC1P48995 793 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 AGFG1P52594 562 aaKnown RBP4.32□□□□□ -1.72
CD44-226ENST00000527889 HADHBP55084 474 aaKnown RBP4.32□□□□□ -1.72
CD44-226ENST00000527889 CORO7P57737 925 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 RPL7AP62424 266 aaKnown RBP4.32□□□□□ -1.72
CD44-226ENST00000527889 FAM189BP81408 668 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 RNASELQ05823 741 aaKnown RBP4.32□□□□□ -1.72
CD44-226ENST00000527889 PDCLQ13371 301 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 MAMLD1Q13495 774 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 SIM2Q14190 667 aaPredicted RBP4.32□□□□□ -1.72
CD44-226ENST00000527889 TRIM25Q14258 630 aaKnown RBP4.32□□□□□ -1.72
CD44-226ENST00000527889 ELF2Q15723 593 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 CNGA2Q16280 664 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 WHAMMP3Q1A5X7 153 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 ERCC6LQ2NKX8 1250 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 DNAJC21Q5F1R6 531 aaKnown RBP4.32□□□□□ -1.72
CD44-226ENST00000527889 MDH1BQ5I0G3 518 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 NOMO2Q5JPE7 1267 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 XP32Q5T750 250 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 MFSD4BQ5TF39 518 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 RNF220Q5VTB9 566 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 DCAF12L1Q5VU92 463 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 BTBD8Q5XKL5 378 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 STEAP3Q658P3 488 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 OR6B2Q6IFH4 312 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 PLEKHA7Q6IQ23 1121 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 C11orf63Q6NUN7 778 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 AADACL2Q6P093 401 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 DNAJC24Q6P3W2 148 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 C16orf87Q6PH81 154 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 LCLAT1Q6UWP7 414 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 FAM183BPQ6ZVS7 135 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 PNPLA5Q7Z6Z6 429 aaPredicted RBP4.32□□□□□ -1.72
CD44-226ENST00000527889 SLCO6A1Q86UG4 719 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 UNC93AQ86WB7 457 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 XYLT1Q86Y38 959 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 IQCF2Q8IXL9 164 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 COLGALT2Q8IYK4 626 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms