RNA–Protein interactions for RNA: ENST00000524955.1

CHMP4A-202, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 2

Gene CHMP4A, Length 268 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-202ENST00000524955 HCN4Q9Y3Q4 1203 aa4.67□□□□□ -1.66
CHMP4A-202ENST00000524955 SLCO1B1Q9Y6L6 691 aa4.67□□□□□ -1.66
CHMP4A-202ENST00000524955 WASF2Q9Y6W5 498 aa4.67□□□□□ -1.66
CHMP4A-202ENST00000524955 MYOFQ9NZM1 2061 aa4.67□□□□□ -1.66
CHMP4A-202ENST00000524955 KIAA1549LQ6ZVL6 1849 aa4.67□□□□□ -1.66
CHMP4A-202ENST00000524955 MIA3Q5JRA6 1907 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 MUC22E2RYF6 1773 aaPredicted RBP4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 TARSL2A2RTX5 802 aaKnown RBP4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 MIF4GDA9UHW6 222 aaKnown RBP4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 PATE3B3GLJ2 98 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 NPC1O15118 1278 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 MATN3O15232 486 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 KCNN4O15554 427 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 KIF5CO60282 957 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 RNASEH1O60930 286 aaKnown RBP4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 NDUFS2O75306 463 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 FSBPO95073 299 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 IGSF6O95976 241 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 MT-CYBP00156 380 aaPredicted RBP4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 FGGP02679 453 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 PDHA1P08559 390 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 ALPIP09923 528 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 PIRTP0C851 137 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 ZSCAN5DPP0CG00 497 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 RBP3P10745 1247 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 ETS1P14921 441 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 PRLRP16471 622 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 ZFXP17010 805 aaPredicted RBP4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 CTPS1P17812 591 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 NFKB1P19838 968 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 TGM2P21980 687 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 CCNCP24863 283 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 CD6P30203 668 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 DRD3P35462 400 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 CETN2P41208 172 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 CD86P42081 329 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 ABL2P42684 1182 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 KCNJ1P48048 391 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 ZNF135P52742 658 aaPredicted RBP4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 GDF10P55107 478 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 SNRPD1P62314 119 aaKnown RBP4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 PPP2CBP62714 309 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 PPP2CAP67775 309 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 MRPS25P82663 173 aaKnown RBP4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 NHLH1Q02575 133 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 BCL2L1Q07817 233 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 SLC20A2Q08357 652 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 PPIDQ08752 370 aaKnown RBP4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 WASHC5Q12768 1159 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 TRAF2Q12933 501 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 OLIG2Q13516 323 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 TFDP2Q14188 446 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 SPARCL1Q14515 664 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 ELAVL3Q14576 367 aaKnown RBP4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 PDK1Q15118 436 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 PRKD1Q15139 912 aaPredicted RBP4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 PPP2R5EQ16537 467 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 LONRF2Q1L5Z9 754 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 MAP7D1Q3KQU3 841 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 HSF5Q4G112 596 aaPredicted RBP4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 USP39Q53GS9 565 aaKnown RBP4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 FAXCQ5TGI0 409 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 SEL1L3Q68CR1 1132 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 DENND2CQ68D51 928 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 DARS2Q6PI48 645 aaKnown RBP4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 NCEH1Q6PIU2 408 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 GDPD4Q6W3E5 623 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 SYT10Q6XYQ8 523 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 ZNF662Q6ZS27 426 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 MICALCLQ6ZW33 695 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 PARS2Q7L3T8 475 aaKnown RBP4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 PID1Q7Z2X4 250 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 SRLQ86TD4 932 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 SLC13A5Q86YT5 568 aaPredicted RBP4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 SLC41A1Q8IVJ1 513 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 CAMKK1Q8N5S9 505 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 PCDH20Q8N6Y1 951 aaKnown RBP4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 FAM71DQ8N9W8 422 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 ZBTB44Q8NCP5 570 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 OR14C36Q8NHC7 312 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 CCDC26Q8TAB7 109 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 CCDC110Q8TBZ0 833 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 KCNV2Q8TDN2 545 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 NSMCE1Q8WV22 266 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 TFB1MQ8WVM0 346 aaKnown RBP4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 GAB3Q8WWW8 586 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 ZNF592Q92610 1267 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 HDAC11Q96DB2 347 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 C16orf45Q96MC5 204 aaPredicted RBP4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 HSPA12BQ96MM6 686 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 GDAP1L1Q96MZ0 367 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 OLFM3Q96PB7 478 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 QKIQ96PU8 341 aaKnown RBP eCLIP4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 RBM15Q96T37 977 aaKnown RBP eCLIP4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 OMDQ99983 421 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 SEMA3CQ99985 751 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 APOL2Q9BQE5 337 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 TMEM121Q9BTD3 319 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 IER2Q9BTL4 223 aa4.66□□□□□ -1.66
CHMP4A-202ENST00000524955 WRAP53Q9BUR4 548 aaKnown RBP4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms