RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 HOPXQ9BPY8 73 aaPredicted RBP3.61□□□□□ -1.83
USP53-205ENST00000509769 KCNS3Q9BQ31 491 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 MKRN2Q9H000 416 aaKnown RBP3.61□□□□□ -1.83
USP53-205ENST00000509769 SLC12A5Q9H2X9 1139 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 SMURF1Q9HCE7 757 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 XPNPEP1Q9NQW7 623 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 CTPS2Q9NRF8 586 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 MTMR4Q9NYA4 1195 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 STAP2Q9UGK3 403 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 MAGEL2Q9UJ55 1249 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 LAMP5Q9UJQ1 280 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 TRHDEQ9UKU6 1024 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 AP4E1Q9UPM8 1137 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 DRG1Q9Y295 367 aaKnown RBP3.61□□□□□ -1.83
USP53-205ENST00000509769 PRKAB1Q9Y478 270 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 TESMINQ9Y4I5 508 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 PCDHA5Q9Y5H7 936 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 IFT172Q9UG01 1749 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 ERBB4Q15303 1308 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 NRXN3Q9Y4C0 1643 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 A0A087X0B3 334 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 E2F8A0AVK6 867 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 PLEKHG3A1L390 1219 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 E9PBE3 544 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 C2CD2LO14523 706 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 MAGEB4O15481 346 aaPredicted RBP3.61□□□□□ -1.83
USP53-205ENST00000509769 DYRK3O43781 588 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 SHOX2O60902 331 aaPredicted RBP3.61□□□□□ -1.83
USP53-205ENST00000509769 ARHGEF15O94989 841 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 RPP14O95059 124 aaKnown RBP3.61□□□□□ -1.83
USP53-205ENST00000509769 SNAPINO95295 136 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 CALCAP01258 141 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 IFNGP01579 166 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 PGRP06401 933 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 UCHL1P09936 223 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 WEE2P0C1S8 567 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 GTF2F2P13984 249 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 XRCC1P18887 633 aaPredicted RBP3.61□□□□□ -1.83
USP53-205ENST00000509769 RAB3AP20336 220 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 CYP7A1P22680 504 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 RRM1P23921 792 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 TARSP26639 723 aaKnown RBP3.61□□□□□ -1.83
USP53-205ENST00000509769 GMPRP36959 345 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 HSD17B3P37058 310 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 TGM4P49221 684 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 FHITP49789 147 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 USP11P51784 963 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 EIF6P56537 245 aaKnown RBP3.61□□□□□ -1.83
USP53-205ENST00000509769 HTRA4P83105 476 aaPredicted RBP3.61□□□□□ -1.83
USP53-205ENST00000509769 TLE3Q04726 772 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 POU5F1BQ06416 359 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 FRG1Q14331 258 aaKnown RBP3.61□□□□□ -1.83
USP53-205ENST00000509769 ZNF268Q14587 947 aaPredicted RBP3.61□□□□□ -1.83
USP53-205ENST00000509769 ACAP1Q15027 740 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 GRK1Q15835 563 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 NFE2Q16621 373 aaPredicted RBP3.61□□□□□ -1.83
USP53-205ENST00000509769 C4orf17Q53FE4 359 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 ODR4Q5SWX8 454 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 FAM162BQ5T6X4 162 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 METTL21CQ5VZV1 264 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 PDPK2PQ6A1A2 396 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 THAP5Q7Z6K1 395 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 PPM1NQ8N819 430 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 LINS1Q8NG48 757 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 RNF31Q96EP0 1072 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 OR5B12Q96R08 314 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 LPIN3Q9BQK8 851 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 ADPGKQ9BRR6 497 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 MAF1Q9H063 256 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 CCDC86Q9H6F5 360 aaKnown RBP3.61□□□□□ -1.83
USP53-205ENST00000509769 OPA3Q9H6K4 179 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 MOB1AQ9H8S9 216 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 EBF2Q9HAK2 575 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 GPR108Q9NPR9 543 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 HEBP1Q9NRV9 189 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 SLC22A11Q9NSA0 550 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 GDAP2Q9NXN4 497 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 DDX43Q9NXZ2 648 aaKnown RBP3.61□□□□□ -1.83
USP53-205ENST00000509769 CD274Q9NZQ7 290 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 ZNF70Q9UC06 446 aaPredicted RBP3.61□□□□□ -1.83
USP53-205ENST00000509769 PRKAG2Q9UGJ0 569 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 ADAM28Q9UKQ2 775 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 DHRS7Q9Y394 339 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 COL5A2P05997 1499 aaPredicted RBP3.61□□□□□ -1.83
USP53-205ENST00000509769 CLUHO75153 1309 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 E5RI56 91 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 PTGES3LE9PB15 166 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 E2F3O00716 465 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 BHLHE40O14503 412 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 ADAM12O43184 909 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 LCMT2O60294 686 aaKnown RBP3.61□□□□□ -1.83
USP53-205ENST00000509769 RAD17O75943 681 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 ALDH1A1P00352 501 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 GPIP06744 558 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 POLBP06746 335 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 ODC1P11926 461 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 IL1R1P14778 569 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 CSF2RAP15509 400 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 EIF2AK2P19525 551 aaKnown RBP3.61□□□□□ -1.83
USP53-205ENST00000509769 CD72P21854 359 aa3.61□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms