RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 SERHLQ9NQF3 203 aa16.61■□□□□ 0.25
COL7A1-210ENST00000487017 ARL8BQ9NVJ2 186 aa16.61■□□□□ 0.25
COL7A1-210ENST00000487017 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP16.61■□□□□ 0.25
COL7A1-210ENST00000487017 NUDT5Q9UKK9 219 aa16.61■□□□□ 0.25
COL7A1-210ENST00000487017 RIMS1Q86UR5 1692 aaKnown RBP16.61■□□□□ 0.25
COL7A1-210ENST00000487017 H3BMM5 538 aa16.61■□□□□ 0.25
COL7A1-210ENST00000487017 H3BN98 237 aa16.61■□□□□ 0.25
COL7A1-210ENST00000487017 RNASEH1O60930 286 aaKnown RBP16.61■□□□□ 0.25
COL7A1-210ENST00000487017 PEX11AO75192 247 aa16.61■□□□□ 0.25
COL7A1-210ENST00000487017 ACVR2BQ13705 512 aa16.61■□□□□ 0.25
COL7A1-210ENST00000487017 FGD3Q5JSP0 725 aa16.61■□□□□ 0.25
COL7A1-210ENST00000487017 CERS5Q8N5B7 392 aa16.61■□□□□ 0.25
COL7A1-210ENST00000487017 MLYCDO95822 493 aa16.61■□□□□ 0.25
COL7A1-210ENST00000487017 CKBP12277 381 aa16.61■□□□□ 0.25
COL7A1-210ENST00000487017 GUCA1AP43080 201 aaPredicted RBP16.61■□□□□ 0.25
COL7A1-210ENST00000487017 FOLH1Q04609 750 aa16.61■□□□□ 0.25
COL7A1-210ENST00000487017 INO80DQ53TQ3 878 aaPredicted RBP16.61■□□□□ 0.25
COL7A1-210ENST00000487017 BROXQ5VW32 411 aa16.61■□□□□ 0.25
COL7A1-210ENST00000487017 TNS4Q8IZW8 715 aa16.61■□□□□ 0.25
COL7A1-210ENST00000487017 OSGEPL1Q9H4B0 414 aa16.61■□□□□ 0.25
COL7A1-210ENST00000487017 ARL15Q9NXU5 204 aa16.61■□□□□ 0.25
COL7A1-210ENST00000487017 LYPLA2O95372 231 aa16.61■□□□□ 0.25
COL7A1-210ENST00000487017 COX7A2P14406 83 aa16.61■□□□□ 0.25
COL7A1-210ENST00000487017 EPHA3P29320 983 aa16.61■□□□□ 0.25
COL7A1-210ENST00000487017 ZCCHC8Q6NZY4 707 aaKnown RBP16.61■□□□□ 0.25
COL7A1-210ENST00000487017 EPHX4Q8IUS5 362 aa16.61■□□□□ 0.25
COL7A1-210ENST00000487017 GAD1Q99259 594 aa16.61■□□□□ 0.25
COL7A1-210ENST00000487017 NDNQ99608 321 aa16.61■□□□□ 0.25
COL7A1-210ENST00000487017 NOL6Q9H6R4 1146 aaKnown RBP16.61■□□□□ 0.25
COL7A1-210ENST00000487017 KLQ9UEF7 1012 aa16.61■□□□□ 0.25
COL7A1-210ENST00000487017 SLIT3O75094 1523 aa16.61■□□□□ 0.25
COL7A1-210ENST00000487017 DYTNA2CJ06 578 aa16.6■□□□□ 0.25
COL7A1-210ENST00000487017 TK2O00142 265 aa16.6■□□□□ 0.25
COL7A1-210ENST00000487017 LIN7AO14910 233 aaPredicted RBP16.6■□□□□ 0.25
COL7A1-210ENST00000487017 MYL12BO14950 172 aa16.6■□□□□ 0.25
COL7A1-210ENST00000487017 ZBTB14O43829 449 aa16.6■□□□□ 0.25
COL7A1-210ENST00000487017 BPGMP07738 259 aa16.6■□□□□ 0.25
COL7A1-210ENST00000487017 CDK20Q8IZL9 346 aa16.6■□□□□ 0.25
COL7A1-210ENST00000487017 CERKQ8TCT0 537 aa16.6■□□□□ 0.25
COL7A1-210ENST00000487017 COX10Q12887 443 aa16.6■□□□□ 0.25
COL7A1-210ENST00000487017 LRRN4Q8WUT4 740 aa16.6■□□□□ 0.25
COL7A1-210ENST00000487017 MTFMTQ96DP5 389 aaKnown RBP16.6■□□□□ 0.25
COL7A1-210ENST00000487017 GBA2Q9HCG7 927 aaPredicted RBP16.6■□□□□ 0.25
COL7A1-210ENST00000487017 MARCH2Q9P0N8 246 aa16.6■□□□□ 0.25
COL7A1-210ENST00000487017 SNAP91O60641 907 aa16.6■□□□□ 0.25
COL7A1-210ENST00000487017 GRK4P32298 578 aa16.6■□□□□ 0.25
COL7A1-210ENST00000487017 ACSM2AQ08AH3 577 aa16.6■□□□□ 0.25
COL7A1-210ENST00000487017 RIPK1Q13546 671 aa16.6■□□□□ 0.25
COL7A1-210ENST00000487017 ACSM2BQ68CK6 577 aa16.6■□□□□ 0.25
COL7A1-210ENST00000487017 IQSEC1Q6DN90 963 aa16.6■□□□□ 0.25
COL7A1-210ENST00000487017 MTSS1LQ765P7 747 aa16.6■□□□□ 0.25
COL7A1-210ENST00000487017 OSBPL11Q9BXB4 747 aa16.6■□□□□ 0.25
COL7A1-210ENST00000487017 ZCCHC2Q9C0B9 1178 aaKnown RBP16.6■□□□□ 0.25
COL7A1-210ENST00000487017 RNF19AQ9NV58 838 aa16.6■□□□□ 0.25
COL7A1-210ENST00000487017 SMPD4Q9NXE4 827 aa16.6■□□□□ 0.25
COL7A1-210ENST00000487017 CLIC5Q9NZA1 410 aa16.6■□□□□ 0.25
COL7A1-210ENST00000487017 XPR1Q9UBH6 696 aa16.6■□□□□ 0.25
COL7A1-210ENST00000487017 PRR5-ARHGAP8B1AHC4 643 aa16.6■□□□□ 0.25
COL7A1-210ENST00000487017 FGFR1P11362 822 aa16.6■□□□□ 0.25
COL7A1-210ENST00000487017 ARHGAP8P85298 464 aa16.6■□□□□ 0.25
COL7A1-210ENST00000487017 DNAJB14Q8TBM8 379 aa16.6■□□□□ 0.25
COL7A1-210ENST00000487017 SENP6Q9GZR1 1112 aaPredicted RBP16.6■□□□□ 0.25
COL7A1-210ENST00000487017 STARD7Q9NQZ5 370 aa16.6■□□□□ 0.25
COL7A1-210ENST00000487017 PNPLA3Q9NST1 481 aa16.6■□□□□ 0.25
COL7A1-210ENST00000487017 ARHGAP28Q9P2N2 729 aa16.6■□□□□ 0.25
COL7A1-210ENST00000487017 TBKBP1A7MCY6 615 aa16.6■□□□□ 0.25
COL7A1-210ENST00000487017 CLTBP09497 229 aa16.6■□□□□ 0.25
COL7A1-210ENST00000487017 MYL12AP19105 171 aa16.6■□□□□ 0.25
COL7A1-210ENST00000487017 PLCL1Q15111 1095 aa16.6■□□□□ 0.25
COL7A1-210ENST00000487017 CCDC149Q6ZUS6 474 aa16.6■□□□□ 0.25
COL7A1-210ENST00000487017 PLPPR4Q7Z2D5 763 aa16.6■□□□□ 0.25
COL7A1-210ENST00000487017 WDR36Q8NI36 951 aaKnown RBP16.6■□□□□ 0.25
COL7A1-210ENST00000487017 TEKT5Q96M29 485 aa16.6■□□□□ 0.25
COL7A1-210ENST00000487017 ARHGEF3Q9NR81 526 aa16.6■□□□□ 0.25
COL7A1-210ENST00000487017 PNPOQ9NVS9 261 aa16.6■□□□□ 0.25
COL7A1-210ENST00000487017 CDH9Q9ULB4 789 aa16.6■□□□□ 0.25
COL7A1-210ENST00000487017 SPATA31C2B4DYI2 1134 aa16.59■□□□□ 0.25
COL7A1-210ENST00000487017 ROR2Q01974 943 aaKnown RBP16.59■□□□□ 0.25
COL7A1-210ENST00000487017 ITGADQ13349 1161 aa16.59■□□□□ 0.25
COL7A1-210ENST00000487017 ZNF618Q5T7W0 954 aa16.59■□□□□ 0.25
COL7A1-210ENST00000487017 LRRC49Q8IUZ0 686 aa16.59■□□□□ 0.25
COL7A1-210ENST00000487017 UXS1Q8NBZ7 420 aa16.59■□□□□ 0.25
COL7A1-210ENST00000487017 JOSD2Q8TAC2 188 aa16.59■□□□□ 0.25
COL7A1-210ENST00000487017 SLC44A1Q8WWI5 657 aa16.59■□□□□ 0.25
COL7A1-210ENST00000487017 LHX5Q9H2C1 402 aa16.59■□□□□ 0.25
COL7A1-210ENST00000487017 ETAA1Q9NY74 926 aa16.59■□□□□ 0.25
COL7A1-210ENST00000487017 MCM8Q9UJA3 840 aa16.59■□□□□ 0.25
COL7A1-210ENST00000487017 COG5Q9UP83 839 aa16.59■□□□□ 0.25
COL7A1-210ENST00000487017 CENPXA8MT69 81 aa16.59■□□□□ 0.25
COL7A1-210ENST00000487017 DCDC2CA8MYV0 355 aa16.59■□□□□ 0.25
COL7A1-210ENST00000487017 ADSSP30520 456 aa16.59■□□□□ 0.25
COL7A1-210ENST00000487017 LRRC57Q8N9N7 239 aa16.59■□□□□ 0.25
COL7A1-210ENST00000487017 FAM13CQ8NE31 585 aa16.59■□□□□ 0.25
COL7A1-210ENST00000487017 RTKNQ9BST9 563 aa16.59■□□□□ 0.25
COL7A1-210ENST00000487017 R3HDM2Q9Y2K5 976 aaKnown RBP16.59■□□□□ 0.25
COL7A1-210ENST00000487017 CYP2A6P11509 494 aaPredicted RBP16.59■□□□□ 0.25
COL7A1-210ENST00000487017 ATP12AP54707 1039 aa16.59■□□□□ 0.25
COL7A1-210ENST00000487017 ITGA1P56199 1179 aa16.59■□□□□ 0.25
COL7A1-210ENST00000487017 DGCR6Q14129 220 aa16.59■□□□□ 0.25
COL7A1-210ENST00000487017 NOMO1Q15155 1222 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms