RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 C17orf113A0A1B0GUU1 675 aa6.3□□□□□ -1.4
USP40-213ENST00000483216 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP6.3□□□□□ -1.4
USP40-213ENST00000483216 I6L893 689 aaPredicted RBP6.3□□□□□ -1.4
USP40-213ENST00000483216 CLDN7O95471 211 aa6.3□□□□□ -1.4
USP40-213ENST00000483216 LCATP04180 440 aa6.3□□□□□ -1.4
USP40-213ENST00000483216 CD72P21854 359 aa6.3□□□□□ -1.4
USP40-213ENST00000483216 TRAF1Q13077 416 aa6.3□□□□□ -1.4
USP40-213ENST00000483216 ME3Q16798 604 aa6.3□□□□□ -1.4
USP40-213ENST00000483216 RETSATQ6NUM9 610 aa6.3□□□□□ -1.4
USP40-213ENST00000483216 ZNF517Q6ZMY9 492 aaPredicted RBP6.3□□□□□ -1.4
USP40-213ENST00000483216 FAM83HQ6ZRV2 1179 aaPredicted RBP6.3□□□□□ -1.4
USP40-213ENST00000483216 RBFAQ8N0V3 343 aa6.3□□□□□ -1.4
USP40-213ENST00000483216 DNAAF1Q8NEP3 725 aa6.3□□□□□ -1.4
USP40-213ENST00000483216 RFWD2Q8NHY2 731 aa6.3□□□□□ -1.4
USP40-213ENST00000483216 TMEM170AQ8WVE7 144 aa6.3□□□□□ -1.4
USP40-213ENST00000483216 USP13Q92995 863 aaPredicted RBP6.3□□□□□ -1.4
USP40-213ENST00000483216 MAELQ96JY0 434 aaKnown RBP6.3□□□□□ -1.4
USP40-213ENST00000483216 MYH16Q9H6N6 1097 aa6.3□□□□□ -1.4
USP40-213ENST00000483216 HIF1ANQ9NWT6 349 aa6.3□□□□□ -1.4
USP40-213ENST00000483216 SAGE1Q9NXZ1 904 aa6.3□□□□□ -1.4
USP40-213ENST00000483216 RRN3Q9NYV6 651 aa6.3□□□□□ -1.4
USP40-213ENST00000483216 VPS8Q8N3P4 1428 aa6.3□□□□□ -1.4
USP40-213ENST00000483216 WDR62O43379 1518 aa6.3□□□□□ -1.4
USP40-213ENST00000483216 GOLGA6L10A0A0M3HER8 536 aa6.29□□□□□ -1.4
USP40-213ENST00000483216 PLEKHD1A6NEE1 506 aa6.29□□□□□ -1.4
USP40-213ENST00000483216 EYA2O00167 538 aa6.29□□□□□ -1.4
USP40-213ENST00000483216 PER2O15055 1255 aa6.29□□□□□ -1.4
USP40-213ENST00000483216 NCAM2O15394 837 aa6.29□□□□□ -1.4
USP40-213ENST00000483216 RGS14O43566 566 aa6.29□□□□□ -1.4
USP40-213ENST00000483216 PSMC2P35998 433 aaKnown RBP6.29□□□□□ -1.4
USP40-213ENST00000483216 GPD2P43304 727 aa6.29□□□□□ -1.4
USP40-213ENST00000483216 RFX5P48382 616 aaPredicted RBP6.29□□□□□ -1.4
USP40-213ENST00000483216 CENPAP49450 140 aa6.29□□□□□ -1.4
USP40-213ENST00000483216 THBS3P49746 956 aa6.29□□□□□ -1.4
USP40-213ENST00000483216 HTR6P50406 440 aa6.29□□□□□ -1.4
USP40-213ENST00000483216 ARSFP54793 590 aa6.29□□□□□ -1.4
USP40-213ENST00000483216 VAMP2P63027 116 aa6.29□□□□□ -1.4
USP40-213ENST00000483216 SLC18A2Q05940 514 aa6.29□□□□□ -1.4
USP40-213ENST00000483216 NAA25Q14CX7 972 aa6.29□□□□□ -1.4
USP40-213ENST00000483216 DNTTIP2Q5QJE6 756 aaKnown RBP6.29□□□□□ -1.4
USP40-213ENST00000483216 IL20RBQ6UXL0 311 aa6.29□□□□□ -1.4
USP40-213ENST00000483216 Q6ZSV7 163 aa6.29□□□□□ -1.4
USP40-213ENST00000483216 LRRC8DQ7L1W4 858 aa6.29□□□□□ -1.4
USP40-213ENST00000483216 ZNF367Q7RTV3 350 aa6.29□□□□□ -1.4
USP40-213ENST00000483216 PRSS45Q7RTY3 260 aa6.29□□□□□ -1.4
USP40-213ENST00000483216 B4GALNT2Q8NHY0 566 aa6.29□□□□□ -1.4
USP40-213ENST00000483216 OIT3Q8WWZ8 545 aa6.29□□□□□ -1.4
USP40-213ENST00000483216 ATOH1Q92858 354 aaPredicted RBP6.29□□□□□ -1.4
USP40-213ENST00000483216 LYZL4Q96KX0 146 aa6.29□□□□□ -1.4
USP40-213ENST00000483216 EPHX3Q9H6B9 360 aa6.29□□□□□ -1.4
USP40-213ENST00000483216 WDR6Q9NNW5 1121 aaKnown RBP6.29□□□□□ -1.4
USP40-213ENST00000483216 PCDHA7Q9UN72 937 aa6.29□□□□□ -1.4
USP40-213ENST00000483216 INSL5Q9Y5Q6 135 aa6.29□□□□□ -1.4
USP40-213ENST00000483216 LRRFIP2Q9Y608 721 aaKnown RBP6.29□□□□□ -1.4
USP40-213ENST00000483216 OR6C75A6NL08 312 aa6.28□□□□□ -1.4
USP40-213ENST00000483216 LDB2O43679 373 aa6.28□□□□□ -1.4
USP40-213ENST00000483216 GUCY1B2O75343 617 aa6.28□□□□□ -1.4
USP40-213ENST00000483216 CNTFP26441 200 aa6.28□□□□□ -1.4
USP40-213ENST00000483216 HOXD3P31249 432 aaPredicted RBP6.28□□□□□ -1.4
USP40-213ENST00000483216 PGM1P36871 562 aa6.28□□□□□ -1.4
USP40-213ENST00000483216 MAPK9P45984 424 aa6.28□□□□□ -1.4
USP40-213ENST00000483216 GPS2Q13227 327 aa6.28□□□□□ -1.4
USP40-213ENST00000483216 ADGRG6Q86SQ4 1221 aa6.28□□□□□ -1.4
USP40-213ENST00000483216 CPXM2Q8N436 756 aa6.28□□□□□ -1.4
USP40-213ENST00000483216 MCPH1Q8NEM0 835 aa6.28□□□□□ -1.4
USP40-213ENST00000483216 TMEM18Q96B42 140 aa6.28□□□□□ -1.4
USP40-213ENST00000483216 GFM1Q96RP9 751 aaKnown RBP6.28□□□□□ -1.4
USP40-213ENST00000483216 GPR63Q9BZJ6 419 aa6.28□□□□□ -1.4
USP40-213ENST00000483216 DCLK3Q9C098 648 aa6.28□□□□□ -1.4
USP40-213ENST00000483216 INAFM1C9JVW0 142 aa6.27□□□□□ -1.41
USP40-213ENST00000483216 VWA5AO00534 786 aa6.27□□□□□ -1.41
USP40-213ENST00000483216 SMAD6O43541 496 aaKnown RBP6.27□□□□□ -1.41
USP40-213ENST00000483216 CTPS1P17812 591 aa6.27□□□□□ -1.41
USP40-213ENST00000483216 BLKP51451 505 aa6.27□□□□□ -1.41
USP40-213ENST00000483216 NANOS2P60321 138 aaKnown RBP6.27□□□□□ -1.41
USP40-213ENST00000483216 Q0VFX4 171 aa6.27□□□□□ -1.41
USP40-213ENST00000483216 FNBP1LQ5T0N5 605 aa6.27□□□□□ -1.41
USP40-213ENST00000483216 LCE1AQ5T7P2 110 aa6.27□□□□□ -1.41
USP40-213ENST00000483216 NAA35Q5VZE5 725 aa6.27□□□□□ -1.41
USP40-213ENST00000483216 C17orf99Q6UX52 265 aa6.27□□□□□ -1.41
USP40-213ENST00000483216 PRR26Q8N8Z3 221 aa6.27□□□□□ -1.41
USP40-213ENST00000483216 MARK4Q96L34 752 aa6.27□□□□□ -1.41
USP40-213ENST00000483216 APOLD1Q96LR9 279 aa6.27□□□□□ -1.41
USP40-213ENST00000483216 LHPPQ9H008 270 aa6.27□□□□□ -1.41
USP40-213ENST00000483216 MVB12BQ9H7P6 319 aa6.27□□□□□ -1.41
USP40-213ENST00000483216 GGA3Q9NZ52 723 aa6.27□□□□□ -1.41
USP40-213ENST00000483216 IFT80Q9P2H3 777 aaPredicted RBP6.27□□□□□ -1.41
USP40-213ENST00000483216 IL36RNQ9UBH0 155 aa6.27□□□□□ -1.41
USP40-213ENST00000483216 GJD2Q9UKL4 321 aa6.27□□□□□ -1.41
USP40-213ENST00000483216 HSF4Q9ULV5 492 aa6.27□□□□□ -1.41
USP40-213ENST00000483216 FZD10Q9ULW2 581 aa6.27□□□□□ -1.41
USP40-213ENST00000483216 SRPRBQ9Y5M8 271 aaKnown RBP6.27□□□□□ -1.41
USP40-213ENST00000483216 PTGDR2Q9Y5Y4 395 aa6.27□□□□□ -1.41
USP40-213ENST00000483216 URB2Q14146 1524 aaKnown RBP6.26□□□□□ -1.41
USP40-213ENST00000483216 A0A1B0GVT2 93 aa6.26□□□□□ -1.41
USP40-213ENST00000483216 RRN3P2A6NIE6 340 aa6.26□□□□□ -1.41
USP40-213ENST00000483216 HOXC11O43248 304 aaPredicted RBP6.26□□□□□ -1.41
USP40-213ENST00000483216 CEP104O60308 925 aa6.26□□□□□ -1.41
USP40-213ENST00000483216 SOX30O94993 753 aa6.26□□□□□ -1.41
USP40-213ENST00000483216 POLBP06746 335 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms