RNA–Protein interactions for RNA: ENST00000480139.5

LIME1-205, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene LIME1, Length 819 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-205ENST00000480139 KLF1Q13351 362 aaPredicted RBP20.02■□□□□ 0.8
LIME1-205ENST00000480139 XRCC4Q13426 336 aa20.02■□□□□ 0.8
LIME1-205ENST00000480139 PRKD1Q15139 912 aaPredicted RBP20.02■□□□□ 0.8
LIME1-205ENST00000480139 NOMO1Q15155 1222 aa20.02■□□□□ 0.8
LIME1-205ENST00000480139 RALGPS1Q5JS13 557 aa20.02■□□□□ 0.8
LIME1-205ENST00000480139 ATXN7L2Q5T6C5 722 aaPredicted RBP20.02■□□□□ 0.8
LIME1-205ENST00000480139 SEL1L2Q5TEA6 688 aa20.02■□□□□ 0.8
LIME1-205ENST00000480139 AADACL2Q6P093 401 aa20.02■□□□□ 0.8
LIME1-205ENST00000480139 SLC36A4Q6YBV0 504 aa20.02■□□□□ 0.8
LIME1-205ENST00000480139 AADATQ8N5Z0 425 aa20.02■□□□□ 0.8
LIME1-205ENST00000480139 PPP1R16AQ96I34 528 aa20.02■□□□□ 0.8
LIME1-205ENST00000480139 TUBGCP5Q96RT8 1024 aa20.02■□□□□ 0.8
LIME1-205ENST00000480139 MGME1Q9BQP7 344 aa20.02■□□□□ 0.8
LIME1-205ENST00000480139 ZDHHC6Q9H6R6 413 aa20.02■□□□□ 0.8
LIME1-205ENST00000480139 SAE1Q9UBE0 346 aaPredicted RBP20.02■□□□□ 0.8
LIME1-205ENST00000480139 CYP8B1Q9UNU6 501 aa20.02■□□□□ 0.8
LIME1-205ENST00000480139 NCKAP1Q9Y2A7 1128 aa20.02■□□□□ 0.8
LIME1-205ENST00000480139 HACD1B0YJ81 288 aa20.01■□□□□ 0.79
LIME1-205ENST00000480139 KRIT1O00522 736 aa20.01■□□□□ 0.79
LIME1-205ENST00000480139 SLC7A4O43246 635 aa20.01■□□□□ 0.79
LIME1-205ENST00000480139 CCNB1P14635 433 aa20.01■□□□□ 0.79
LIME1-205ENST00000480139 CD6P30203 668 aa20.01■□□□□ 0.79
LIME1-205ENST00000480139 DRD3P35462 400 aa20.01■□□□□ 0.79
LIME1-205ENST00000480139 AP1S1P61966 158 aa20.01■□□□□ 0.79
LIME1-205ENST00000480139 ARSIQ5FYB1 569 aa20.01■□□□□ 0.79
LIME1-205ENST00000480139 ZNF569Q5MCW4 686 aa20.01■□□□□ 0.79
LIME1-205ENST00000480139 SPDYCQ5MJ68 293 aa20.01■□□□□ 0.79
LIME1-205ENST00000480139 CCDC181Q5TID7 509 aa20.01■□□□□ 0.79
LIME1-205ENST00000480139 ALG1LQ6GMV1 187 aa20.01■□□□□ 0.79
LIME1-205ENST00000480139 RYBPQ8N488 228 aaPredicted RBP20.01■□□□□ 0.79
LIME1-205ENST00000480139 TTC13Q8NBP0 860 aa20.01■□□□□ 0.79
LIME1-205ENST00000480139 GRIN3AQ8TCU5 1115 aa20.01■□□□□ 0.79
LIME1-205ENST00000480139 TFB1MQ8WVM0 346 aaKnown RBP20.01■□□□□ 0.79
LIME1-205ENST00000480139 RLN3Q8WXF3 142 aa20.01■□□□□ 0.79
LIME1-205ENST00000480139 ZNF419Q96HQ0 510 aaPredicted RBP20.01■□□□□ 0.79
LIME1-205ENST00000480139 ZC3H10Q96K80 434 aaKnown RBP20.01■□□□□ 0.79
LIME1-205ENST00000480139 EXOC2Q96KP1 924 aa20.01■□□□□ 0.79
LIME1-205ENST00000480139 CD93Q9NPY3 652 aa20.01■□□□□ 0.79
LIME1-205ENST00000480139 FBXL12Q9NXK8 326 aa20.01■□□□□ 0.79
LIME1-205ENST00000480139 MBD1Q9UIS9 605 aaPredicted RBP20.01■□□□□ 0.79
LIME1-205ENST00000480139 PROB1E7EW31 1015 aa20■□□□□ 0.79
LIME1-205ENST00000480139 KCNK3O14649 394 aa20■□□□□ 0.79
LIME1-205ENST00000480139 MUSKO15146 869 aa20■□□□□ 0.79
LIME1-205ENST00000480139 MTSS1O43312 755 aa20■□□□□ 0.79
LIME1-205ENST00000480139 ZNF189O75820 626 aaPredicted RBP20■□□□□ 0.79
LIME1-205ENST00000480139 CR2P20023 1033 aa20■□□□□ 0.79
LIME1-205ENST00000480139 ITGB7P26010 798 aa20■□□□□ 0.79
LIME1-205ENST00000480139 RGRP47804 291 aa20■□□□□ 0.79
LIME1-205ENST00000480139 OTUD4Q01804 1114 aaKnown RBP20■□□□□ 0.79
LIME1-205ENST00000480139 CCDC15Q0P6D6 951 aa20■□□□□ 0.79
LIME1-205ENST00000480139 AP1B1Q10567 949 aa20■□□□□ 0.79
LIME1-205ENST00000480139 SRSF5Q13243 272 aaKnown RBP20■□□□□ 0.79
LIME1-205ENST00000480139 SRLQ86TD4 932 aa20■□□□□ 0.79
LIME1-205ENST00000480139 PGBD5Q8N414 524 aa20■□□□□ 0.79
LIME1-205ENST00000480139 OR6K2Q8NGY2 324 aa20■□□□□ 0.79
LIME1-205ENST00000480139 ACTL9Q8TC94 416 aa20■□□□□ 0.79
LIME1-205ENST00000480139 HCAR2Q8TDS4 363 aa20■□□□□ 0.79
LIME1-205ENST00000480139 QKIQ96PU8 341 aaKnown RBP eCLIP20■□□□□ 0.79
LIME1-205ENST00000480139 NUDCD1Q96RS6 583 aa20■□□□□ 0.79
LIME1-205ENST00000480139 IL12RB2Q99665 862 aa20■□□□□ 0.79
LIME1-205ENST00000480139 OMDQ99983 421 aa20■□□□□ 0.79
LIME1-205ENST00000480139 HDAC8Q9BY41 377 aa20■□□□□ 0.79
LIME1-205ENST00000480139 SGK2Q9HBY8 427 aa20■□□□□ 0.79
LIME1-205ENST00000480139 WSB2Q9NYS7 404 aaPredicted RBP20■□□□□ 0.79
LIME1-205ENST00000480139 EVLQ9UI08 416 aaPredicted RBP20■□□□□ 0.79
LIME1-205ENST00000480139 SPAG17Q6Q759 2223 aa20■□□□□ 0.79
LIME1-205ENST00000480139 ANKRD36A6QL64 1941 aa20■□□□□ 0.79
LIME1-205ENST00000480139 A0A1W2PP55 124 aa19.99■□□□□ 0.79
LIME1-205ENST00000480139 KPNA3O00505 521 aaPredicted RBP19.99■□□□□ 0.79
LIME1-205ENST00000480139 CES1P23141 567 aa19.99■□□□□ 0.79
LIME1-205ENST00000480139 NHLH1Q02575 133 aa19.99■□□□□ 0.79
LIME1-205ENST00000480139 SIM2Q14190 667 aaPredicted RBP19.99■□□□□ 0.79
LIME1-205ENST00000480139 SLC45A4Q5BKX6 768 aa19.99■□□□□ 0.79
LIME1-205ENST00000480139 ZNF805Q5CZA5 627 aa19.99■□□□□ 0.79
LIME1-205ENST00000480139 CEP68Q76N32 757 aa19.99■□□□□ 0.79
LIME1-205ENST00000480139 SLC35F6Q8N357 371 aa19.99■□□□□ 0.79
LIME1-205ENST00000480139 HDDC3Q8N4P3 179 aa19.99■□□□□ 0.79
LIME1-205ENST00000480139 FAM160A2Q8N612 972 aaPredicted RBP19.99■□□□□ 0.79
LIME1-205ENST00000480139 FRMD1Q8N878 549 aa19.99■□□□□ 0.79
LIME1-205ENST00000480139 HAUS1Q96CS2 278 aa19.99■□□□□ 0.79
LIME1-205ENST00000480139 TOE1Q96GM8 510 aaKnown RBP19.99■□□□□ 0.79
LIME1-205ENST00000480139 ZNF641Q96N77 438 aaPredicted RBP19.99■□□□□ 0.79
LIME1-205ENST00000480139 POLR1EQ9GZS1 481 aaKnown RBP19.99■□□□□ 0.79
LIME1-205ENST00000480139 BTBD1Q9H0C5 482 aa19.99■□□□□ 0.79
LIME1-205ENST00000480139 PCED1AQ9H1Q7 454 aa19.99■□□□□ 0.79
LIME1-205ENST00000480139 DYRK4Q9NR20 520 aa19.99■□□□□ 0.79
LIME1-205ENST00000480139 FAM86C1Q9NVL1 165 aa19.99■□□□□ 0.79
LIME1-205ENST00000480139 RBM22Q9NW64 420 aaKnown RBP eCLIP19.99■□□□□ 0.79
LIME1-205ENST00000480139 SERGEFQ9UGK8 458 aa19.99■□□□□ 0.79
LIME1-205ENST00000480139 ATP8A1Q9Y2Q0 1164 aa19.99■□□□□ 0.79
LIME1-205ENST00000480139 CEP192Q8TEP8 1941 aa19.98■□□□□ 0.79
LIME1-205ENST00000480139 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP19.98■□□□□ 0.79
LIME1-205ENST00000480139 KCNK1O00180 336 aa19.98■□□□□ 0.79
LIME1-205ENST00000480139 RNASEH2AO75792 299 aaKnown RBP19.98■□□□□ 0.79
LIME1-205ENST00000480139 BCKDHBP21953 392 aa19.98■□□□□ 0.79
LIME1-205ENST00000480139 GKP32189 559 aa19.98■□□□□ 0.79
LIME1-205ENST00000480139 METAP1P53582 386 aa19.98■□□□□ 0.79
LIME1-205ENST00000480139 PLK5Q496M5 336 aa19.98■□□□□ 0.79
LIME1-205ENST00000480139 HS1BP3Q53T59 392 aa19.98■□□□□ 0.79
LIME1-205ENST00000480139 AGBL4Q5VU57 503 aa19.98■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms