RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 CLDN2P57739 230 aa14.34□□□□□ -0.11
UPF3A-204ENST00000475218 POLD3Q15054 466 aaPredicted RBP14.34□□□□□ -0.11
UPF3A-204ENST00000475218 KDM7AQ6ZMT4 941 aa14.34□□□□□ -0.11
UPF3A-204ENST00000475218 TMPRSS7Q7RTY8 843 aa14.34□□□□□ -0.11
UPF3A-204ENST00000475218 TMC6Q7Z403 805 aa14.34□□□□□ -0.11
UPF3A-204ENST00000475218 SLC22A18ASQ8N1D0 253 aa14.34□□□□□ -0.11
UPF3A-204ENST00000475218 SKA1Q96BD8 255 aa14.34□□□□□ -0.11
UPF3A-204ENST00000475218 HMCESQ96FZ2 354 aa14.34□□□□□ -0.11
UPF3A-204ENST00000475218 ZDHHC6Q9H6R6 413 aa14.34□□□□□ -0.11
UPF3A-204ENST00000475218 ITM2BQ9Y287 266 aa14.34□□□□□ -0.11
UPF3A-204ENST00000475218 TMEM8BA6NDV4 472 aa14.34□□□□□ -0.11
UPF3A-204ENST00000475218 TMEM191CA6NGB0 347 aa14.34□□□□□ -0.11
UPF3A-204ENST00000475218 TMCC1O94876 653 aa14.34□□□□□ -0.11
UPF3A-204ENST00000475218 RECQLP46063 649 aaPredicted RBP14.34□□□□□ -0.11
UPF3A-204ENST00000475218 OVGP1Q12889 678 aa14.34□□□□□ -0.11
UPF3A-204ENST00000475218 DNAJC3Q13217 504 aa14.34□□□□□ -0.11
UPF3A-204ENST00000475218 STAT4Q14765 748 aa14.34□□□□□ -0.11
UPF3A-204ENST00000475218 ASIC2Q16515 512 aa14.34□□□□□ -0.11
UPF3A-204ENST00000475218 EFHC2Q5JST6 749 aa14.34□□□□□ -0.11
UPF3A-204ENST00000475218 EID2Q8N6I1 236 aa14.34□□□□□ -0.11
UPF3A-204ENST00000475218 OR13H1Q8NG92 308 aa14.34□□□□□ -0.11
UPF3A-204ENST00000475218 OR2AP1Q8NGE2 309 aa14.34□□□□□ -0.11
UPF3A-204ENST00000475218 ZCCHC14Q8WYQ9 949 aaKnown RBP14.34□□□□□ -0.11
UPF3A-204ENST00000475218 TSC1Q92574 1164 aa14.34□□□□□ -0.11
UPF3A-204ENST00000475218 BMFQ96LC9 184 aa14.34□□□□□ -0.11
UPF3A-204ENST00000475218 LRRC19Q9H756 370 aa14.34□□□□□ -0.11
UPF3A-204ENST00000475218 CBX8Q9HC52 389 aa14.34□□□□□ -0.11
UPF3A-204ENST00000475218 GPR27Q9NS67 375 aa14.34□□□□□ -0.11
UPF3A-204ENST00000475218 SYCE3A1L190 88 aa14.33□□□□□ -0.12
UPF3A-204ENST00000475218 SRRM3A6NNA2 597 aaPredicted RBP14.33□□□□□ -0.12
UPF3A-204ENST00000475218 AP1G1O43747 822 aa14.33□□□□□ -0.12
UPF3A-204ENST00000475218 CREB3O43889 395 aa14.33□□□□□ -0.12
UPF3A-204ENST00000475218 GSRP00390 522 aa14.33□□□□□ -0.12
UPF3A-204ENST00000475218 ITGAVP06756 1048 aa14.33□□□□□ -0.12
UPF3A-204ENST00000475218 CCDC172P0C7W6 258 aa14.33□□□□□ -0.12
UPF3A-204ENST00000475218 GIMD1P0DJR0 217 aa14.33□□□□□ -0.12
UPF3A-204ENST00000475218 SKILP12757 684 aa14.33□□□□□ -0.12
UPF3A-204ENST00000475218 HNRNPA2B1P22626 353 aaKnown RBP14.33□□□□□ -0.12
UPF3A-204ENST00000475218 CLDN6P56747 220 aa14.33□□□□□ -0.12
UPF3A-204ENST00000475218 SERINC3Q13530 473 aa14.33□□□□□ -0.12
UPF3A-204ENST00000475218 MYLK3Q32MK0 819 aa14.33□□□□□ -0.12
UPF3A-204ENST00000475218 SLC45A4Q5BKX6 768 aa14.33□□□□□ -0.12
UPF3A-204ENST00000475218 DCUN1D2Q6PH85 259 aa14.33□□□□□ -0.12
UPF3A-204ENST00000475218 ABI3BPQ7Z7G0 1075 aa14.33□□□□□ -0.12
UPF3A-204ENST00000475218 LUZP1Q86V48 1076 aa14.33□□□□□ -0.12
UPF3A-204ENST00000475218 UMODL1-AS1Q8N2C9 162 aa14.33□□□□□ -0.12
UPF3A-204ENST00000475218 SLC25A45Q8N413 288 aa14.33□□□□□ -0.12
UPF3A-204ENST00000475218 PPP1R16AQ96I34 528 aa14.33□□□□□ -0.12
UPF3A-204ENST00000475218 KLF6Q99612 283 aaPredicted RBP14.33□□□□□ -0.12
UPF3A-204ENST00000475218 PDFQ9HBH1 243 aa14.33□□□□□ -0.12
UPF3A-204ENST00000475218 DYRK4Q9NR20 520 aa14.33□□□□□ -0.12
UPF3A-204ENST00000475218 LHX3Q9UBR4 397 aa14.33□□□□□ -0.12
UPF3A-204ENST00000475218 FTSJ1Q9UET6 329 aa14.33□□□□□ -0.12
UPF3A-204ENST00000475218 POM121BA6NF01 834 aa14.32□□□□□ -0.12
UPF3A-204ENST00000475218 RASA4BC9J798 803 aa14.32□□□□□ -0.12
UPF3A-204ENST00000475218 RASA4O43374 803 aa14.32□□□□□ -0.12
UPF3A-204ENST00000475218 SDC3O75056 442 aa14.32□□□□□ -0.12
UPF3A-204ENST00000475218 PCDH8O95206 1070 aa14.32□□□□□ -0.12
UPF3A-204ENST00000475218 FTLP02792 175 aaPredicted RBP14.32□□□□□ -0.12
UPF3A-204ENST00000475218 THEGLP0DJG4 465 aa14.32□□□□□ -0.12
UPF3A-204ENST00000475218 ARRB1P49407 418 aaPredicted RBP14.32□□□□□ -0.12
UPF3A-204ENST00000475218 AIF1P55008 147 aa14.32□□□□□ -0.12
UPF3A-204ENST00000475218 CAMK2BQ13554 666 aa14.32□□□□□ -0.12
UPF3A-204ENST00000475218 CYTH1Q15438 398 aa14.32□□□□□ -0.12
UPF3A-204ENST00000475218 SMAD1Q15797 465 aaKnown RBP14.32□□□□□ -0.12
UPF3A-204ENST00000475218 ZNF805Q5CZA5 627 aa14.32□□□□□ -0.12
UPF3A-204ENST00000475218 TPRG1LQ5T0D9 272 aa14.32□□□□□ -0.12
UPF3A-204ENST00000475218 HGSNATQ68CP4 663 aa14.32□□□□□ -0.12
UPF3A-204ENST00000475218 DHRS13Q6UX07 377 aa14.32□□□□□ -0.12
UPF3A-204ENST00000475218 KLHDC7BQ96G42 594 aa14.32□□□□□ -0.12
UPF3A-204ENST00000475218 SNRNP25Q9BV90 132 aaKnown RBP14.32□□□□□ -0.12
UPF3A-204ENST00000475218 PARVAQ9NVD7 372 aa14.32□□□□□ -0.12
UPF3A-204ENST00000475218 UCKL1Q9NWZ5 548 aa14.32□□□□□ -0.12
UPF3A-204ENST00000475218 RALYQ9UKM9 306 aaKnown RBP14.32□□□□□ -0.12
UPF3A-204ENST00000475218 FAM149AA5PLN7 773 aa14.32□□□□□ -0.12
UPF3A-204ENST00000475218 C16orf96A6NNT2 1141 aa14.32□□□□□ -0.12
UPF3A-204ENST00000475218 KRIT1O00522 736 aa14.32□□□□□ -0.12
UPF3A-204ENST00000475218 TRIM38O00635 465 aa14.32□□□□□ -0.12
UPF3A-204ENST00000475218 ENC1O14682 589 aa14.32□□□□□ -0.12
UPF3A-204ENST00000475218 AREL1O15033 823 aa14.32□□□□□ -0.12
UPF3A-204ENST00000475218 YKT6O15498 198 aa14.32□□□□□ -0.12
UPF3A-204ENST00000475218 INSIG1O15503 277 aa14.32□□□□□ -0.12
UPF3A-204ENST00000475218 BUB1O43683 1085 aa14.32□□□□□ -0.12
UPF3A-204ENST00000475218 UGT2B4P06133 528 aa14.32□□□□□ -0.12
UPF3A-204ENST00000475218 GZMAP12544 262 aa14.32□□□□□ -0.12
UPF3A-204ENST00000475218 ITIH2P19823 946 aa14.32□□□□□ -0.12
UPF3A-204ENST00000475218 PSMA2P25787 234 aa14.32□□□□□ -0.12
UPF3A-204ENST00000475218 ACADVLP49748 655 aa14.32□□□□□ -0.12
UPF3A-204ENST00000475218 GEMIN4P57678 1058 aaKnown RBP14.32□□□□□ -0.12
UPF3A-204ENST00000475218 YBEYP58557 167 aaPredicted RBP14.32□□□□□ -0.12
UPF3A-204ENST00000475218 KLHL40Q2TBA0 621 aa14.32□□□□□ -0.12
UPF3A-204ENST00000475218 FIGNQ5HY92 759 aa14.32□□□□□ -0.12
UPF3A-204ENST00000475218 LRRC73Q5JTD7 316 aa14.32□□□□□ -0.12
UPF3A-204ENST00000475218 OXR1Q8N573 874 aa14.32□□□□□ -0.12
UPF3A-204ENST00000475218 CNDP2Q96KP4 475 aaKnown RBP14.32□□□□□ -0.12
UPF3A-204ENST00000475218 KLHL32Q96NJ5 620 aa14.32□□□□□ -0.12
UPF3A-204ENST00000475218 KCTD15Q96SI1 283 aaPredicted RBP14.32□□□□□ -0.12
UPF3A-204ENST00000475218 EPAS1Q99814 870 aa14.32□□□□□ -0.12
UPF3A-204ENST00000475218 C1QTNF2Q9BXJ5 285 aa14.32□□□□□ -0.12
UPF3A-204ENST00000475218 SLC17A9Q9BYT1 436 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms