RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 AKAP7Q9P0M2 348 aaPredicted RBP5.42□□□□□ -1.54
SYNE1-220ENST00000471834 GMIPQ9P107 970 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 TLK1Q9UKI8 766 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 PAIP2BQ9ULR5 123 aaKnown RBP5.42□□□□□ -1.54
SYNE1-220ENST00000471834 A0A0A0MRY4 1105 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 A0A0G2JND7 137 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 MEI4A8MW99 385 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 MAFO75444 373 aaPredicted RBP5.42□□□□□ -1.54
SYNE1-220ENST00000471834 S100BP04271 92 aaPredicted RBP5.42□□□□□ -1.54
SYNE1-220ENST00000471834 EFNA5P52803 228 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 LDHDQ86WU2 507 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 ANKRD13BQ86YJ7 626 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 C12orf43Q96C57 262 aaKnown RBP5.42□□□□□ -1.54
SYNE1-220ENST00000471834 CLPTM1LQ96KA5 538 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 SPATA13Q96N96 652 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 BRINP2Q9C0B6 783 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 GABARAPL1Q9H0R8 117 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 ZNF395Q9H8N7 513 aaPredicted RBP5.42□□□□□ -1.54
SYNE1-220ENST00000471834 KMT5AQ9NQR1 393 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 OGTO15294 1046 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 KRT1P04264 644 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 ZCCHC18P0CG32 403 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 PABPC1P11940 636 aaKnown RBP5.42□□□□□ -1.54
SYNE1-220ENST00000471834 M6PRP20645 277 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 PMLP29590 882 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 PCDH1Q08174 1060 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 FSCBQ5H9T9 825 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 ZBTB41Q5SVQ8 909 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 RARS2Q5T160 578 aaKnown RBP5.42□□□□□ -1.54
SYNE1-220ENST00000471834 ANKRD26P1Q6NSI1 321 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 TUBA3EQ6PEY2 450 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 EME1Q96AY2 570 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 NMD3Q96D46 503 aaKnown RBP5.42□□□□□ -1.54
SYNE1-220ENST00000471834 PLCXD1Q9NUJ7 323 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 POLR3BQ9NW08 1133 aaPredicted RBP5.42□□□□□ -1.54
SYNE1-220ENST00000471834 RBAKQ9NYW8 714 aaPredicted RBP5.42□□□□□ -1.54
SYNE1-220ENST00000471834 TNFSF13BQ9Y275 285 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 GIT1Q9Y2X7 761 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 GOLGA8SH3BPF8 625 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 GOLGA8MH3BSY2 632 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 EGFRP00533 1210 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 PGAM1P18669 254 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 MX2P20592 715 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 GPR155Q7Z3F1 870 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 CAMK1DQ8IU85 385 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 CCDC60Q8IWA6 550 aaPredicted RBP5.42□□□□□ -1.54
SYNE1-220ENST00000471834 TDRD5Q8NAT2 981 aaKnown RBP5.42□□□□□ -1.54
SYNE1-220ENST00000471834 SLC16A10Q8TF71 515 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 EXT2Q93063 718 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 FAR2Q96K12 515 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 DOLKQ9UPQ8 538 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 ISPDA4D126 451 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 PLOD2O00469 737 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 ANKRD28O15084 1053 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 GSTA4O15217 222 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 AVILO75366 819 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 FKBP9O95302 570 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 IGLV3-25P01717 112 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 SLC35E2BP0CK96 405 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 TFEBP19484 476 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 TCF7P36402 384 aaPredicted RBP5.42□□□□□ -1.54
SYNE1-220ENST00000471834 SCNN1BP51168 640 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 TMEM62Q0P6H9 643 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 BNIP2Q12982 314 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 AQP6Q13520 282 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 PGM5Q15124 567 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 DLG2Q15700 870 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 SMU1Q2TAY7 513 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 AFMIDQ63HM1 303 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 LPCAT4Q643R3 524 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 CRLF3Q8IUI8 442 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 SEPT8Q92599 483 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 CDHR1Q96JP9 859 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 NPY6RQ99463 290 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 IL12RB2Q99665 862 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 SLC25A23Q9BV35 468 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 NANOGQ9H9S0 305 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 RRAGCQ9HB90 399 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 FEM1BQ9UK73 627 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 CENPBD1B2RD01 187 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 ZBTB42B2RXF5 422 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 PIK3R2O00459 728 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 PAPSS2O95340 614 aaPredicted RBP5.42□□□□□ -1.54
SYNE1-220ENST00000471834 CD1EP15812 388 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 ZNF24P17028 368 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 CD58P19256 250 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 CYP3A5P20815 502 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 GSTM2P28161 218 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 EEFSECP57772 596 aaKnown RBP5.42□□□□□ -1.54
SYNE1-220ENST00000471834 SNX17Q15036 470 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 JADE1Q6IE81 842 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 FRA10AC1Q70Z53 315 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 RASGRP3Q8IV61 690 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 ATP6V0A1Q93050 837 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 L3HYPDHQ96EM0 354 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 RMND5BQ96G75 393 aaPredicted RBP5.42□□□□□ -1.54
SYNE1-220ENST00000471834 PPP1R36Q96LQ0 422 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 TWNKQ96RR1 684 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 TCF12Q99081 682 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 FEM1AQ9BSK4 669 aa5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms